Two-State Folding Kinetics of Small Proteins in the Sequential Collapse Model: Dependence of the Folding Rate on Contact Order and Temperature

Journal of Physical Chemistry B

Volumn 107, Issue 46, 2003, Pages 12874-12877

  Bergasa Caceres, Fernando ^a,b   Rabitz, Herschel A ^a  

^a PRINCETON UNIVERSITY   (United States)

^b Endesa SA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ENTROPY; FREE ENERGY; HYDROPHOBICITY; MOLECULAR STRUCTURE; RATE CONSTANTS;

MULTISTATE FOLDING; SEQUENTIAL COLLAPSE MODEL (SCM);

PROTEINS;

EID: 0345393292     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp030384q     Document Type: Article

References (42)

1. Jackson S. E.; Fersht A. R. Biochemistry 1991, 30, 10428.
2. Viguera, A. R.; Martínez, J. C.; Filimonoc, V. V.; Maleo P. L.; Serrano, L. Biochemistry 1994, 33, 2142.
3. Huang, G. S.; Das, T. G. Biochemistry 1995, 34, 3884.
4. Schönbruner, N.; Koller, K.-P.; Kiefhaber, T. J. Mol. Biol. 1997, 268, 526.
5. Plaxco, K. W.; Simons, K. T.; Ruczinski, I.; Baker, D. Biochemistry 2000, 39, 11177.
6. Baker, D. Nature 2000, 405, 39.
7. Scalley, M. L.; Baker, D. Proc. Nail. Acad. Sci. U.S.A. 1997, 94, 10636.
8. Jennings, P. A.; Wright, P. E. Science 1993, 262, 892.
9. Jacobs, M. D.; Fox, R. O. Proc. Atari Acad. Sci. U.S.A. 1994, 91, 449.
10. Ballew, R. M.; Sabelko, J.; Gruebele, M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 5759.
11. Gladwin, S. T.; Evans, P. A. Fold. Design 1996, 1, 407.
12. Eliezer, D.; Yao, J.; Dyson H. J.; Wright, P. E. Nat. Struct Biol 1998, 5, 148.
13. Nishimura, C.; Prytulla, S.; Dyson H. J.; Wright, P. E. Nat. Struct. Biol. 2000, 7, 679.
14. Kuwata, K.; Shastry, R.; Cheng, H.; Hoshino, M.; Batt C. A.; Roder, H. Atar. Struct. Biol. 2001, 8, 151.
15. Dill, K. A.; Chan, H. S. Nat. Struct. Biol. 1997, 4, 10.
16. Dokholyan, N. V.; Li, L.; Ding, F.; Shaknovich, E. I. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 8637.
17. Makarov, D. E.; Plaxco, K. W. Protein Sci. 2003, 12, 17.
18. Fersht A. R., Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 1525.
19. Dinner A. R.; Karplus, M. Atar. Struct. Biol. 2001, 8, 21.
20. Galzitskaya, O. V.; Finkelstein, A. V. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 11299.
21. Plotkin, S. S.; Onuchic, J. N. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 6509.
22. Muñoz, V.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 11311.
23. Hinds, D. A.; Levin, M. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 2536.
24. Bergasa-Caceres, F.; Ronneberg, T. A.; Rabitz, H. A. J. Phys. Chem. B 1999, 103, 9749.
25. Bergasa-Caceres, F.; Rabitz, H. A. J. Phys. Chem. B 2001, 105, 2874.
26. Bergasa-Caceres, F.; Rabitz, H. A. J. Phys. Chem. B 2002, 106, 4818.
27. Bergasa-Caceres, F.; Rabitz, H. A. J. Phys. Chem. B 2003, 107, 3606.
28. Dill, K. A. Biochemistry 1990, 29, 7123.
29. Kauzmann W. Adv. Protein Chem. 1959, 14, 1.
30. O'Neil, K. T.; Degrado, W. F. Science 1990, 250, 646.
31. Schulz, G. E.; Schirmer, R. H. Principles of Protein Structure, Springer-Verlag: New York, 1979.
32. Sali, A.; Shakhnovich, E.; Karplus, M. Nature 1994, 369, 248.
33. Bryngelson, J. D.; Onuchic, J. N.; Socci, N. D.; Wolynes, P. G., Proteins: Struct, Funct., Genet. 1995, 21, 167.
34. Sheinerman, F. B.; Brooks, C. L. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 1562.
35. Socci, N. D.; Onuchic. J. N.; Wolynes, P. G. Proteins: Struct. Funct., Cenet. 1998, 32, 136.
36. Sosnick, T. R.; Mayne, L.; Englander, S. W. Nat. Struct. Biol. 1994, 1. 149.
37. Debe, D. A.; Goddard, W. A. J. Mol. Biol. 1999, 294, 619.
38. Plaxco, K. W.; Spitzfaden, C.; Campbell, I. D.; Dobson, C. M. J. Mol. Biol. 1997, 270, 763.
39. Fauchère, J. L.; Pliska, V. Eur. J. Med. Chem. 1983, 18, 369.
40. Schindler, T.; Schmid, F. Biochemistry 1996, 35, 16833.
41. Bergasa-Caceres, F.; Rabitz, H. A. Chem. Phys. Lett. 2003, 376, 612.
42. Socci, N. D.; Onuchic, J. N.; Wolynes, P. G. J. Chem. Phys. 1996, 104, 5860.