메뉴 건너뛰기




Volumn 102, Issue 1, 2013, Pages 38-46

Exploring the utility of human DNA methylation arrays for profiling mouse genomic DNA

Author keywords

DNA methylation; Epigenetics; Human; Infinium BeadChip; Mouse; Xeno array

Indexed keywords

BISULFITE; GENOMIC DNA;

EID: 84878520734     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.04.014     Document Type: Article
Times cited : (33)

References (26)
  • 1
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genome-wide DNA methylation analysis
    • Laird P.W. Principles and challenges of genome-wide DNA methylation analysis. Nat. Rev. Genet. 2010, 11:191-203.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 3
    • 33947641598 scopus 로고    scopus 로고
    • Cross-species microarray hybridizations: a developing tool for studying species diversity
    • Bar-Or C., Czosnek H., Koltai H. Cross-species microarray hybridizations: a developing tool for studying species diversity. Trends Genet. 2007, 23:200-207.
    • (2007) Trends Genet. , vol.23 , pp. 200-207
    • Bar-Or, C.1    Czosnek, H.2    Koltai, H.3
  • 4
    • 34447336411 scopus 로고    scopus 로고
    • Using DNA microarrays to study gene expression in closely related species
    • Oshlack A., Chabot A.E., Smyth G.K., Gilad Y. Using DNA microarrays to study gene expression in closely related species. Bioinformatics 2007, 23:1235-1242.
    • (2007) Bioinformatics , vol.23 , pp. 1235-1242
    • Oshlack, A.1    Chabot, A.E.2    Smyth, G.K.3    Gilad, Y.4
  • 8
    • 84862173149 scopus 로고    scopus 로고
    • SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
    • Maksimovic J., Gordon L., Oshlack A. SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips. Genome Biol. 2012, 13:R44.
    • (2012) Genome Biol. , vol.13
    • Maksimovic, J.1    Gordon, L.2    Oshlack, A.3
  • 11
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: whole genome bisulfite sequence MAPping program
    • Xi Y., Li W. BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinforma. 2009, 10:232.
    • (2009) BMC Bioinforma. , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 12
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger F., Andrews S.R. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 2011, 27:1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 13
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S., Benner C., Spann N., Bertolino E., Lin Y.C., Laslo P., Cheng J.X., Murre C., Singh H., Glass C.K. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 2010, 38:576-589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 14
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D.W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2008, 4:44-57.
    • (2008) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 15
    • 60849139395 scopus 로고    scopus 로고
    • GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
    • Eden E., Navon R., Steinfeld I., Lipson D., Yakhini Z. GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinforma. 2009, 10:48.
    • (2009) BMC Bioinforma. , vol.10 , pp. 48
    • Eden, E.1    Navon, R.2    Steinfeld, I.3    Lipson, D.4    Yakhini, Z.5
  • 16
    • 3042687605 scopus 로고    scopus 로고
    • Apaf-1 and caspase-9 accelerate apoptosis, but do not determine whether factor-deprived or drug-treated cells die
    • Ekert P.G. Apaf-1 and caspase-9 accelerate apoptosis, but do not determine whether factor-deprived or drug-treated cells die. J. Cell Biol. 2004, 165:835-842.
    • (2004) J. Cell Biol. , vol.165 , pp. 835-842
    • Ekert, P.G.1
  • 17
    • 66349116028 scopus 로고    scopus 로고
    • Cross species analysis of microarray expression data
    • Lu Y., Huggins P., Bar-Joseph Z. Cross species analysis of microarray expression data. Bioinformatics 2009, 25:1476-1483.
    • (2009) Bioinformatics , vol.25 , pp. 1476-1483
    • Lu, Y.1    Huggins, P.2    Bar-Joseph, Z.3
  • 18
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays
    • Kane M., Jatkoe T., Stumpf C., Lu J. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res. 2000, 28(22):4552-4557.
    • (2000) Nucleic Acids Res. , vol.28 , Issue.22 , pp. 4552-4557
    • Kane, M.1    Jatkoe, T.2    Stumpf, C.3    Lu, J.4
  • 19
    • 79952815844 scopus 로고    scopus 로고
    • Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray
    • Chen Y.-a., Choufani S., Ferreira J.C., Grafodatskaya D., Butcher D.T., Weksberg R. Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray. Genomics 2011, 97:214-222.
    • (2011) Genomics , vol.97 , pp. 214-222
    • Chen, Y.-A.1    Choufani, S.2    Ferreira, J.C.3    Grafodatskaya, D.4    Butcher, D.T.5    Weksberg, R.6
  • 21
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 23
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent W.J. BLAT-the BLAST-like alignment tool. Genome Res. 2002, 12:656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 25
    • 46249088370 scopus 로고    scopus 로고
    • Lumi: a pipeline for processing illumina microarray
    • Du P., Kibbe W.A., Lin S.M. Lumi: a pipeline for processing illumina microarray. Bioinformatics 2008, 24:1547-1548.
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.