BRAT: Bisulfite-treated reads analysis tool

Bioinformatics

Volumn 26, Issue 4, 2009, Pages 572-573

  Harris, Elena Y ^a   Ponts, Nadia ^b   Levchuk, Aleksandr ^b   Le Roch, Karine ^b   Lonardi, Stefano ^a  

^a University of California Riverside   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77949497797     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp706     Document Type: Article

References (8)

1. Cokus, S. et al. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 452, 215-219.
2. Frommer, M. et al. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl Acad. Sci. USA, 89, 1827-1831.
3. Hormozdiari, F. et al. (2009) Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome Res., 19, 1270-1278.
4. Lister, R. and Ecker, J. (2009) Finding the fifth base: genome-wide sequencing of cytosine methylation. Genome Res., 19, 959-966.
5. Lister, R. et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133, 523-536.
6. Smith, A. et al. (2009) Updates to the RMAP short-read mapping software. Bioinformatics, 25, 2841-2842.
7. Xi, Y. and Li, W. (2009) BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics, 10, 232-240.
8. Zeschnigk, M. et al. (2009) Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete. Hum. Mol. Genet., 18, 1439-1448.