-
1
-
-
77955668141
-
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
-
Alamanova D, Stegmaier P, Kel A. 2010. Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies. BMC Bioinformatics 11: 225.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 225
-
-
Alamanova, D.1
Stegmaier, P.2
Kel, A.3
-
2
-
-
33745904714
-
Hypomorphic promoter mutation in PIGM causes inherited glycosylphosphatidylinositol deficiency
-
(17 co-authors)
-
Almeida AM, Murakami Y, Layton D.M., et al. (17 co-authors). 2006. Hypomorphic promoter mutation in PIGM causes inherited glycosylphosphatidylinositol deficiency. Nat Med. 12: 846-851.
-
(2006)
Nat Med.
, vol.12
, pp. 846-851
-
-
Almeida, A.M.1
Murakami, Y.2
Layton, D.M.3
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer A.A., Zhang J., Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3401
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3401
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
4644309196
-
The functions of animal microRNAs
-
Ambras V. 2004. The functions of animal microRNAs. Nature 431: 350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambras, V.1
-
5
-
-
0025240832
-
Zfa is an expressed retroposon derived from an alternative transcript of the zfx gene
-
Ashworth A, Skene B, Swift S., Lovell-Badge R. 1990. Zfa is an expressed retroposon derived from an alternative transcript of the Zfx gene. EMBO J. 9: 1529-1534.
-
(1990)
EMBO J.
, vol.9
, pp. 1529-1534
-
-
Ashworth, A.1
Skene, B.2
Swift, S.3
Lovell-Badge, R.4
-
6
-
-
56449118064
-
Retrocopy contributions to the evolution of the human genome
-
Baertsch R, Diekhans M, Kent W.J., Haussler D., Brosius J. 2008. Retrocopy contributions to the evolution of the human genome. BMC Genomics 9: 466.
-
(2008)
BMC Genomics
, vol.9
, pp. 466
-
-
Baertsch, R.1
Diekhans, M.2
Kent, W.J.3
Haussler, D.4
Brosius, J.5
-
7
-
-
0036906987
-
Retroposed new genes out of the X in drosophila
-
Betran E, Thornton K, Long M. 2002. Retroposed new genes out of the X in Drosophila. Genome Res. 12: 1854-1859.
-
(2002)
Genome Res.
, vol.12
, pp. 1854-1859
-
-
Betran, E.1
Thornton, K.2
Long, M.3
-
8
-
-
0036097187
-
Evolution of the phosphogly-cerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene
-
Betran E, Wang W, Jin L., Long M. 2001 Evolution of the phosphogly-cerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene. Mol Biol Evol. 19: 654-663.
-
(2001)
Mol Biol Evol.
, vol.19
, pp. 654-663
-
-
Betran, E.1
Wang, W.2
Jin, L.3
Long, M.4
-
9
-
-
0025864962
-
Retroposons - Seeds of evolution
-
Brosius J. 1991. Retroposons - seeds of evolution. Science 251: 753.
-
(1991)
Science
, vol.251
, pp. 753
-
-
Brosius, J.1
-
10
-
-
0032865868
-
RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements
-
Brosius J. 1999. RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. Gene 238: 115-134.
-
(1999)
Gene
, vol.238
, pp. 115-134
-
-
Brosius, J.1
-
11
-
-
6944242766
-
Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux
-
Burki F, Kaessmann H. 2004. Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux. Nat Genet 36: 1061-1063.
-
(2004)
Nat Genet
, vol.36
, pp. 1061-1063
-
-
Burki, F.1
Kaessmann, H.2
-
12
-
-
67650566385
-
Rrs1 is involved in endoplasmic reticulum stress response in huntington disease
-
Camemolla A, Fossale E, Agostoni E., Michelazzi S, Calligaris R, De Maso L, Del Sal G, MacDonald ME, Persichetti F. 2009. Rrs1 is involved in endoplasmic reticulum stress response in Huntington disease. J Biol Chem. 284: 18167-18173.
-
(2009)
J Biol Chem.
, vol.284
, pp. 18167-18173
-
-
Camemolla, A.1
Fossale, E.2
Agostoni, E.3
Michelazzi, S.4
Calligaris, R.5
De Maso, L.6
Del Sal, G.7
MacDonald, M.E.8
Persichetti, F.9
-
13
-
-
34247387864
-
Retrogene movement within- and between-chromosomes in the evolution of drosophila genomes
-
Dai H, Yoshimatsu TF, Long M. 2006. Retrogene movement within- and between-chromosomes in the evolution of Drosophila genomes. Gene 38: 556-102.
-
(2006)
Gene
, vol.38
, pp. 556-102
-
-
Dai, H.1
Yoshimatsu, T.F.2
Long, M.3
-
14
-
-
33644919969
-
Primate microRNAs miR-220 and miR-492 lie within processed pseudogenes
-
Devor EJ. 2006. Primate microRNAs miR-220 and miR-492 lie within processed pseudogenes. J Hered. 97: 186-190.
-
(2006)
J Hered.
, vol.97
, pp. 186-190
-
-
Devor, E.J.1
-
15
-
-
1642475221
-
Extensive gene traffic on the mammalian X chromosome
-
Emerson JJ, Kaessmann H, Betran E., Long M. 2004. Extensive gene traffic on the mammalian X chromosome. Science 303: 537-540.
-
(2004)
Science
, vol.303
, pp. 537-540
-
-
Emerson, J.J.1
Kaessmann, H.2
Betran, E.3
Long, M.4
-
16
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
Esnault C Maestre J, Heidmann T. 2000. Human LINE retrotransposons generate processed pseudogenes. Nat Genet 24: 363-367.
-
(2000)
Nat Genet
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
18
-
-
37349093019
-
Genome organization and gene expression shape the transposable element distribution in the drosophila melanogaster euchromatin
-
Fontanillas P, Hartl DL, Reuter M. 2007. Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin. PLoS Genet 3:e210.
-
(2007)
PLoS Genet
, vol.3
-
-
Fontanillas, P.1
Hartl, D.L.2
Reuter, M.3
-
21
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks J, Nekrutenko A, Taylor J. 2010. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11: R86.
-
(2010)
Genome Biol.
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
22
-
-
33846702343
-
Translating animal research into clinical benefit
-
Hackam DG. 2007. Translating animal research into clinical benefit. BMJ. 334: 163-164.
-
(2007)
BMJ
, vol.334
, pp. 163-164
-
-
Hackam, D.G.1
-
23
-
-
17844396017
-
Transcribed processed pseudogenes in the human genome an intermediate form of expressed retrosequence lacking protein-coding ability
-
Harrison PM, Zheng D, Zhang Z., Carriero N, Gerstein M. 2005. Transcribed processed pseudogenes in the human genome an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res. 33: 2374-2383.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2374-2383
-
-
Harrison, P.M.1
Zheng, D.2
Zhang, Z.3
Carriero, N.4
Gerstein, M.5
-
24
-
-
0036720020
-
The ka/Ks ratio: Diagnosing the form of sequence evolution
-
Hurst LD. 2002. The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet 18: 486-487.
-
(2002)
Trends Genet
, vol.18
, pp. 486-487
-
-
Hurst, L.D.1
-
25
-
-
53049089924
-
Combination of quantitative IMP3 and tumor stage, a new system to predict metastasis for patients with localized renal cell carcinomas
-
Jiang Z, Chu PG, Woda B.A., Liu Q., Balaji KC, Rock KL, Wu CL 2008. Combination of quantitative IMP3 and tumor stage, a new system to predict metastasis for patients with localized renal cell carcinomas. Clin Cancer Res. 14: 5579-5584.
-
(2008)
Clin Cancer Res.
, vol.14
, pp. 5579-5584
-
-
Jiang, Z.1
Chu, P.G.2
Woda, B.A.3
Liu, Q.4
Balaji, K.C.5
Rock, K.L.6
Wu, C.L.7
-
26
-
-
46049114743
-
Oncofetal protein IMP3: A novel molecular marker that predicts metastasis of papillary and chromophobe renal cell carcinomas
-
Jiang Z, Lohse CM, Chu P.G., Wu CL, Woda BA, Rock KL, Kwon ED. 2008. Oncofetal protein IMP3: a novel molecular marker that predicts metastasis of papillary and chromophobe renal cell carcinomas. Cancer 112: 2676-2682.
-
(2008)
Cancer
, vol.112
, pp. 2676-2682
-
-
Jiang, Z.1
Lohse, C.M.2
Chu, P.G.3
Wu, C.L.4
Woda, B.A.5
Rock, K.L.6
Kwon, E.D.7
-
27
-
-
57749177443
-
RNA-based gene duplication: Mechanistic and evolutionary insights
-
Kaessmann H, Vinckenbosch N, Long M. 2009. RNA-based gene duplication: mechanistic and evolutionary insights. Nat Rev Genet 10: 19-31.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 19-31
-
-
Kaessmann, H.1
Vinckenbosch, N.2
Long, M.3
-
28
-
-
0347755531
-
The UCSC table browser data retrieval tool
-
Karolchik D, Hinrichs AS, Furey T.S., Roskin KM, Sugnet CW, Haussler D, Kent WJ. 2004. The UCSC table browser data retrieval tool. Nucleic Acids Res. 32:D493-D496.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Karolchik, D.1
Hinrichs, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
Haussler, D.6
Kent, W.J.7
-
29
-
-
0034889978
-
A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells
-
Kleene KC 2001. A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells. Mech Dev. 106: 3-23.
-
(2001)
Mech Dev.
, vol.106
, pp. 3-23
-
-
Kleene, K.C.1
-
30
-
-
29144483528
-
A retrocopy of a gene can functionally displace the source gene in evolution
-
Krasnov AN, Kurshakova MM, Ramensky V.E., Mardanov PV, Nabirochkina EN, Georgieva SG. 2005. A retrocopy of a gene can functionally displace the source gene in evolution. Nucleic Acids Res. 33: 6654-6661.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6654-6661
-
-
Krasnov, A.N.1
Kurshakova, M.M.2
Ramensky, V.E.3
Mardanov, P.V.4
Nabirochkina, E.N.5
Georgieva, S.G.6
-
31
-
-
33644914709
-
The real-time polymerase chain reaction
-
(12 co-authors)
-
Kubista M, Andrade JM, Bengtsson M, et al. (12 co-authors). 2006. The real-time polymerase chain reaction. Mol Aspects Med. 2: 735-125.
-
(2006)
Mol Aspects Med.
, vol.2
, pp. 735-125
-
-
Kubista, M.1
Andrade, J.M.2
Bengtsson, M.3
-
32
-
-
0019726330
-
Pseudogenes as a paradigm of neutral evolution
-
Li WH, Gojobori T, Nei M. 1981. Pseudogenes as a paradigm of neutral evolution. Nature 292: 237-239.
-
(1981)
Nature
, vol.292
, pp. 237-239
-
-
Li, W.H.1
Gojobori, T.2
Nei, M.3
-
33
-
-
0027905006
-
Natural selection and the origin of jingwei, a chimeric processed functional gene in drosophila
-
Long M, Langley CH. 1993. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 260: 31-95.
-
(1993)
Science
, vol.260
, pp. 31-95
-
-
Long, M.1
Langley, C.H.2
-
34
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS. 2000. The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
35
-
-
78651317908
-
Entrez gene, gene-centered information at NCBI
-
Maglott D, Ostell J, Pruitt K.D., Tatusova T. 2011. Entrez gene, gene-centered information at NCBI. Nucleic Acids Res. 39:D52-D57.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Maglott, D.1
Ostell, J.2
Pruitt, K.D.3
Tatusova, T.4
-
36
-
-
0032483028
-
Evolutionary parameters of the transcribed mammalian genome an analysis of 2,820 orthologous rodent and human sequences
-
Makalowski W, Boguski MS. 1998. Evolutionary parameters of the transcribed mammalian genome an analysis of 2,820 orthologous rodent and human sequences. Proc Natl Acad Sci U S A 95: 9407-9412.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 9407-9412
-
-
Makalowski, W.1
Boguski, M.S.2
-
37
-
-
27844557002
-
Emergence of young human genes after a burst of retroposition in primates
-
Marques AC, Dupanloup I, Vinckenbosch N., Reymond A, Kaessmann H. 2005. Emergence of young human genes after a burst of retroposition in primates. PLoS Biol. 3:e357.
-
(2005)
PLoS Biol.
, vol.3
-
-
Marques, A.C.1
Dupanloup, I.2
Vinckenbosch, N.3
Reymond, A.4
Kaessmann, H.5
-
38
-
-
0033617342
-
A gain-of-function polymorphism in a G-protein coupling domain of the human betal-adrenergic receptor
-
Mason DA, Moore JD, Green S.A., Liggett SB. 1999. A gain-of-function polymorphism in a G-protein coupling domain of the human betal-adrenergic receptor. J Biol Chem. 274: 12670-12674.
-
(1999)
J Biol Chem.
, vol.274
, pp. 12670-12674
-
-
Mason, D.A.1
Moore, J.D.2
Green, S.A.3
Liggett, S.B.4
-
39
-
-
0023091937
-
Human testis-specific PGK gene lacks introns and possesses characteristics of a processed gene
-
McCarrey JR, Thomas K. 1987. Human testis-specific PGK gene lacks introns and possesses characteristics of a processed gene. Nature 326: 501-505.
-
(1987)
Nature
, vol.326
, pp. 501-505
-
-
McCarrey, J.R.1
Thomas, K.2
-
41
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran JV, Holmes SE, Naas T.P., DeBerardinis RJ, Boeke JD, Kazazian HH Jr. 1996. High frequency retrotransposition in cultured mammalian cells. Cell 87: 317-927.
-
(1996)
Cell
, vol.87
, pp. 317-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
Kazazian Jr., H.H.6
-
42
-
-
0034718504
-
Purifying selection and birth-and-death evolution in the ubiquitin gene family
-
Nei M, Rogozin IB, Piontkivska H. 2000. Purifying selection and birth-and-death evolution in the ubiquitin gene family. Proc Natl Acad Sci USA 97: 10866-10871.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10866-10871
-
-
Nei, M.1
Rogozin, I.B.2
Piontkivska, H.3
-
43
-
-
15244339574
-
Origin and evolution of the chicken leukocyte receptor complex
-
Nikolaidis N, Makalowska I, Chalkia D., Makalowski W, Klein J, Nei M. 2005. Origin and evolution of the chicken leukocyte receptor complex. Proc Natl Acad Sci USA. 102: 4057-4062.
-
(2005)
Proc Natl Acad Sci USA.
, vol.102
, pp. 4057-4062
-
-
Nikolaidis, N.1
Makalowska, I.2
Chalkia, D.3
Makalowski, W.4
Klein, J.5
Nei, M.6
-
44
-
-
33645118577
-
A novel chimeric gene, siren, with retroposed promoter sequence in the drosophila bipectinata complex
-
Nozawa M, Aotsuka T, Tamura K. 2005. A novel chimeric gene, siren, with retroposed promoter sequence in the Drosophila bipectinata complex. Genetics 171: 1719-1727.
-
(2005)
Genetics
, vol.171
, pp. 1719-1727
-
-
Nozawa, M.1
Aotsuka, T.2
Tamura, K.3
-
45
-
-
75549086594
-
InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
-
Ostlund G, Schmitt T, Forslund K., Kostler T, Messina DN, Roopra S, Frings O., Sonnhammer EL 2010. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 38: D196-D203.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ostlund, G.1
Schmitt, T.2
Forslund, K.3
Kostler, T.4
Messina, D.N.5
Roopra, S.6
Frings, O.7
Sonnhammer, E.L.8
-
46
-
-
0028280685
-
Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family
-
Ota T, Nei M. 1994. Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family. Mol Biol Evol. 11: 469-482.
-
(1994)
Mol Biol Evol.
, vol.11
, pp. 469-482
-
-
Ota, T.1
Nei, M.2
-
47
-
-
63449122253
-
Burst of young retrogenes and independent retrogene formation in mammals
-
Pan D, Zhang L 2009. Burst of young retrogenes and independent retrogene formation in mammals. PLoS One 4:e5040.
-
(2009)
PLoS One
, vol.4
-
-
Pan, D.1
Zhang, L.2
-
48
-
-
69249097407
-
An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs
-
(17 co-authors)
-
Parker HG, Von Holdt BM, Quignon P, et al. (17 co-authors). 2009. An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs. Science 325: 395-998.
-
(2009)
Science
, vol.325
, pp. 395-998
-
-
Parker, H.G.1
Von Holdt, B.M.2
Quignon, P.3
-
49
-
-
33846677129
-
Comparison of treatment effects between animal experiments and clinical trials: Systematic review
-
Perel P, Roberts I, Sena E., Wheble P, Briscoe C Sandercock P, Macleod M, Mignini LE, Jayaram P, Khan KS. 2007. Comparison of treatment effects between animal experiments and clinical trials: systematic review. BMJ. 334: 197.
-
(2007)
BMJ
, vol.334
, pp. 197
-
-
Perel, P.1
Roberts, I.2
Sena, E.3
Wheble, P.4
Briscoe, C.5
Sandercock, P.6
Macleod, M.7
Mignini, L.E.8
Jayaram, P.9
Khan, K.S.10
-
50
-
-
43249118306
-
Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes
-
Potrzebowski L, Vinckenbosch N, Marques A.C., Chalmel F., Jegou B, Kaessmann H. 2008. Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. PLoS Biol. 6:e80.
-
(2008)
PLoS Biol.
, vol.6
-
-
Potrzebowski, L.1
Vinckenbosch, N.2
Marques, A.C.3
Chalmel, F.4
Jegou, B.5
Kaessmann, H.6
-
51
-
-
0035523359
-
Actin' up: RhoB in cancer and apoptosis
-
Prendergast GC, 2001. Actin' up: RhoB in cancer and apoptosis. Nat Rev Cancer. 1: 162-168.
-
(2001)
Nat Rev Cancer.
, vol.1
, pp. 162-168
-
-
Prendergast, G.C.1
-
52
-
-
12344250580
-
The hereditary spastic paraplegia protein spastin interacts with the ESCRT-III complex-associated endosomal protein CHMP1B
-
Reid E, Connell J, Edwards TU Duley S, Brown SE, Sanderson CM. 2005. The hereditary spastic paraplegia protein spastin interacts with the ESCRT-III complex-associated endosomal protein CHMP1B. Hum Mol Genet 14: 19-38.
-
(2005)
Hum Mol Genet
, vol.14
, pp. 19-38
-
-
Reid, E.1
Connell, J.2
Edwards, T.U.3
Duley, S.4
Brown, S.E.5
Sanderson, C.M.6
-
53
-
-
34249089190
-
Chromosome 8 BAC array comparative genomic hybridization and expression analysis identify amplification and overexpression of TRMT12 in breast cancer
-
Rodriguez V, Chen Y, Elkahloun A., Dutra A, Pak E, Chandrasekharappa S. 2007. Chromosome 8 BAC array comparative genomic hybridization and expression analysis identify amplification and overexpression of TRMT12 in breast cancer. Genes Chromosomes Cancer 46: 694-707.
-
(2007)
Genes Chromosomes Cancer
, vol.46
, pp. 694-707
-
-
Rodriguez, V.1
Chen, Y.2
Elkahloun, A.3
Dutra, A.4
Pak, E.5
Chandrasekharappa, S.6
-
54
-
-
32844466056
-
Further evidence of the involvement of alpha-2A-adrenergic receptor gene (ADRA2A) in inattentive dimensional scores of attention-deficit/hyperactivity disorder
-
Roman T, Polanczyk GV, Zeni C, Genro J.P., Rohde LA, Hua MH. 2006. Further evidence of the involvement of alpha-2A-adrenergic receptor gene (ADRA2A) in inattentive dimensional scores of attention-deficit/hyperactivity disorder. Mol Psychiatry. 11: 8-10.
-
(2006)
Mol Psychiatry.
, vol.11
, pp. 8-10
-
-
Roman, T.1
Polanczyk, G.V.2
Zeni, C.3
Genro, J.P.4
Rohde, L.A.5
Hua, M.H.6
-
55
-
-
74249123937
-
Overexpression of alpha2A-adrenergic receptors contributes to type 2 diabetes
-
(16 co-authors)
-
Rosengren AH, Jokubka R, Tojjar D., et al. (16 co-authors). 2010. Overexpression of alpha2A-adrenergic receptors contributes to type 2 diabetes. Science 327: 217-220.
-
(2010)
Science
, vol.327
, pp. 217-220
-
-
Rosengren, A.H.1
Jokubka, R.2
Tojjar, D.3
-
56
-
-
33846665251
-
Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes
-
Sakai H, Koyanagi KO, Imanishi T, Itoh T., Gojobori T. 2007. Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes. Gene 389: 196-203.
-
(2007)
Gene
, vol.389
, pp. 196-203
-
-
Sakai, H.1
Koyanagi, K.O.2
Imanishi, T.3
Itoh, T.4
Gojobori, T.5
-
57
-
-
0036738872
-
SECE a database on "intron less/single exonic," genes from eukaryotes
-
Sakharkar MK, Kangueane P, Petrov D.A., Kolaskar AS, Subbiah S. 2001 SECE a database on "intron less/single exonic," genes from eukaryotes. Bioinformatics 18: 1266-1267.
-
(2001)
Bioinformatics
, vol.18
, pp. 1266-1267
-
-
Sakharkar, M.K.1
Kangueane, P.2
Petrov, D.A.3
Kolaskar, A.S.4
Subbiah, S.5
-
58
-
-
78651310799
-
Database resources of the national center for biotechnology information
-
(42 co-authors)
-
Sayers EW, Barren T, Benson D.A., et al. (42 co-authors). 2011. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 39: D38-D51.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Sayers, E.W.1
Barren, T.2
Benson, D.A.3
-
59
-
-
35348831130
-
Origins of new male germ-line functions from X-derived autosomal retrogenes in the mouse
-
Shiao MS, Khil P, Camerini-Otero RD, Shiroishi T., Moriwaki K, Yu HT, Long M. 2007. Origins of new male germ-line functions from X-derived autosomal retrogenes in the mouse. Mol Biol Evol. 24: 2242-2253.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 2242-2253
-
-
Shiao, M.S.1
Khil, P.2
Camerini-Otero, R.D.3
Shiroishi, T.4
Moriwaki, K.5
Yu, H.T.6
Long, M.7
-
60
-
-
0021807781
-
RNA-mediated gene duplication: The rat preproinsulin I gene is a functional retroposon
-
Soares MB, Schon E, Henderson A., Karathanasis SK, Cate R, Zeitlin S, Chirgwin J., Efstratiadis A. 1985. RNA-mediated gene duplication: the rat preproinsulin I gene is a functional retroposon. Mol Cell Biol. 5: 2090-2103.
-
(1985)
Mol Cell Biol.
, vol.5
, pp. 2090-2103
-
-
Soares, M.B.1
Schon, E.2
Henderson, A.3
Karathanasis, S.K.4
Cate, R.5
Zeitlin, S.6
Chirgwin, J.7
Efstratiadis, A.8
-
62
-
-
78650460773
-
Primate and rodent specific intron gains and the origin of retrogenes with splice variants
-
Szczesniak MW, Ciomborowska J, Nowak W., Rogozin IB, Makalowska I. 2011. Primate and rodent specific intron gains and the origin of retrogenes with splice variants. Mol Biol Evol. 28: 33-37.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 33-37
-
-
Szczesniak, M.W.1
Ciomborowska, J.2
Nowak, W.3
Rogozin, I.B.4
Makalowska, I.5
-
63
-
-
0029820486
-
Mutations in the MGAT2 gene controlling complex N-glycan synthesis cause carbohydrate-deficient glycoprotein syndrome type II, an autosomal recessive disease with defective brain development
-
Tan J, Dunn J, Jaeken J., Schachter H. 1996. Mutations in the MGAT2 gene controlling complex N-glycan synthesis cause carbohydrate-deficient glycoprotein syndrome type II, an autosomal recessive disease with defective brain development. Am J Hum Genet 59: 810-817.
-
(1996)
Am J Hum Genet
, vol.59
, pp. 810-817
-
-
Tan, J.1
Dunn, J.2
Jaeken, J.3
Schachter, H.4
-
64
-
-
0038586458
-
Evolutionary dynamics of oncogenes and tumor suppressor genes: Higher intensities of purifying selection than other genes
-
Thomas MA, Weston B, Joseph M., Wu W, Nekrutenko A, Tonellato PJ. 2003. Evolutionary dynamics of oncogenes and tumor suppressor genes: higher intensities of purifying selection than other genes. Moi Biol Evol. 20: 564-968.
-
(2003)
Moi Biol Evol.
, vol.20
, pp. 564-968
-
-
Thomas, M.A.1
Weston, B.2
Joseph, M.3
Wu, W.4
Nekrutenko, A.5
Tonellato, P.J.6
-
65
-
-
0032900158
-
Identification of the gene responsible for gelatinous drop-like corneal dystrophy
-
Tsujikawa M, Kurahashi H, Tanaka T., Nishida K, Shimomura Y, Tano Y., Nakamura Y. 1999. Identification of the gene responsible for gelatinous drop-like corneal dystrophy. Nat Genet 21: 420-423.
-
(1999)
Nat Genet
, vol.21
, pp. 420-423
-
-
Tsujikawa, M.1
Kurahashi, H.2
Tanaka, T.3
Nishida, K.4
Shimomura, Y.5
Tano, Y.6
Nakamura, Y.7
-
66
-
-
33644897576
-
Further understanding human disease genes by comparing with housekeeping genes and other genes
-
Tu Z, Wang L, Xu M., Zhou X, Chen T, Sun F. 2006. Further understanding human disease genes by comparing with housekeeping genes and other genes. BMC Genomics 7: 31.
-
(2006)
BMC Genomics
, vol.7
, pp. 31
-
-
Tu, Z.1
Wang, L.2
Xu, M.3
Zhou, X.4
Chen, T.5
Sun, F.6
-
67
-
-
77950679333
-
Can animal models of disease reliably inform human studies?
-
van der Worp HB, Howells DW, Sena E.S., Porritt MJ, Rewell S, O'Collins V, Macleod MR. 2010. Can animal models of disease reliably inform human studies? PLoS Med. 7:e1000245.
-
(2010)
PLoS Med.
, vol.7
-
-
Van Der Worp, H.B.1
Howells, D.W.2
Sena, E.S.3
Porritt, M.J.4
Rewell, S.5
O'Collins, V.6
Macleod, M.R.7
-
68
-
-
0021250403
-
Processed pseudogenes: Characteristics and evolution
-
Vanin EF. 1984. Processed pseudogenes: characteristics and evolution. Biochim Biophys Acta. 782: 231-241.
-
(1984)
Biochim Biophys Acta.
, vol.782
, pp. 231-241
-
-
Vanin, E.F.1
-
70
-
-
1342308231
-
X chromosomes, retrogenes, and their role in male reproduction
-
Wang PJ. 2004. X chromosomes, retrogenes, and their role in male reproduction. Trends Endocrinol Metab. 15: 79-83.
-
(2004)
Trends Endocrinol Metab.
, vol.15
, pp. 79-83
-
-
Wang, P.J.1
-
71
-
-
79953324603
-
Con-elating traits of gene retention, sequence divergence, duplicability, and essentiality in vertebrates, arthropods, and fungi
-
Waterhouse RM, Zdobnov EM, Kriventseva EV. 2011. Con-elating traits of gene retention, sequence divergence, duplicability, and essentiality in vertebrates, arthropods, and fungi. Genome Biol Evol. 3: 75-86.
-
(2011)
Genome Biol Evol.
, vol.3
, pp. 75-86
-
-
Waterhouse, R.M.1
Zdobnov, E.M.2
Kriventseva, E.V.3
-
72
-
-
0022555861
-
Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
-
Weiner AM, Deininger PL, Efstratiadis A. 1986. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu Rev Biochem. 55: 631-661.
-
(1986)
Annu Rev Biochem.
, vol.55
, pp. 631-661
-
-
Weiner, A.M.1
Deininger, P.L.2
Efstratiadis, A.3
-
73
-
-
66149123308
-
The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
-
Wolf YI, Novichkov PS, Karev G.P., Koonin EV, Lipman DJ. 2009. The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages. Proc Natl Acad Sci USA 106: 7273-7280.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7273-7280
-
-
Wolf, Y.I.1
Novichkov, P.S.2
Karev, G.P.3
Koonin, E.V.4
Lipman, D.J.5
-
74
-
-
3843143954
-
A new role for expressed pseudogenes as ncRNA: Regulation of mRNA stability of its homologous coding gene
-
Yano Y, Saito R, Yoshida N., Yoshiki A, Wynshaw-Boris A, Tomita M, Hirotsune S. 2004. A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene. J Mol Med. 82: 414-422.
-
(2004)
J Mol Med.
, vol.82
, pp. 414-422
-
-
Yano, Y.1
Saito, R.2
Yoshida, N.3
Yoshiki, A.4
Wynshaw-Boris, A.5
Tomita, M.6
Hirotsune, S.7
-
75
-
-
35648987151
-
Analysis of the role of retrotransposition in gene evolution in vertebrates
-
Yu Z, Morais D, Ivanga M., Harrison PM. 2007. Analysis of the role of retrotransposition in gene evolution in vertebrates. BMC Bioinformatics 8: 308.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 308
-
-
Yu, Z.1
Morais, D.2
Ivanga, M.3
Harrison, P.M.4
-
76
-
-
77649335136
-
Retrotransposition and mutation events yield rapl GTPases with differential signalling capacity
-
Zemojtel T, Duchniewicz M, Zhang Z., Paluch T, Luz H, Penzkofer T., Scheele JS, Zwartkruis FJ. 2010. Retrotransposition and mutation events yield Rapl GTPases with differential signalling capacity. BMC Evol Biol. 10: 55.
-
(2010)
BMC Evol Biol.
, vol.10
, pp. 55
-
-
Zemojtel, T.1
Duchniewicz, M.2
Zhang, Z.3
Paluch, T.4
Luz, H.5
Penzkofer, T.6
Scheele, J.S.7
Zwartkruis, F.J.8
-
77
-
-
0036544871
-
Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey
-
Zhang J, Zhang YP, Rosenberg HF. 2002. Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Not Genet 30: 411-415.
-
(2002)
Not Genet
, vol.30
, pp. 411-415
-
-
Zhang, J.1
Zhang, Y.P.2
Rosenberg, H.F.3
-
78
-
-
79959408735
-
A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes
-
Zhang YE, Vibranovski MD, Krinsky B.H., Long M. 2011. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics 27: 1749-1753.
-
(2011)
Bioinformatics
, vol.27
, pp. 1749-1753
-
-
Zhang, Y.E.1
Vibranovski, M.D.2
Krinsky, B.H.3
Long, M.4
-
79
-
-
70350747578
-
A functional mouse retroposed gene rps23r1 reduces alzheimer's beta-amyloid levels and tau phosphorylation
-
(17 co-authors)
-
Zhang YW, Liu S, Zhang X et al. (17 co-authors). 2009. A functional mouse retroposed gene Rps23r1 reduces Alzheimer's beta-amyloid levels and tau phosphorylation. Neuron 64: 328-340.
-
(2009)
Neuron
, vol.64
, pp. 328-340
-
-
Zhang, Y.W.1
Liu, S.2
Zhang, X.3
-
80
-
-
0346752110
-
Millions of years of evolution preserved a comprehensive catalog of the processed pseudogenes in the human genome
-
Zhang Z, Harrison PM, Liu Y, Gerstein M. 2003. Millions of years of evolution preserved a comprehensive catalog of the processed pseudogenes in the human genome. Genome Res. 13: 2541-2558.
-
(2003)
Genome Res.
, vol.13
, pp. 2541-2558
-
-
Zhang, Z.1
Harrison, P.M.2
Liu, Y.3
Gerstein, M.4
-
81
-
-
34248669040
-
KaKs-Calculaton calculating ka and ks through model selection and model averaging
-
Zhang Z, Li J, Zhao X.Q., Wang J., Wong GK, Yu J. 2006. KaKs-Calculaton calculating Ka and Ks through model selection and model averaging. Genomics Proteomics Bioinformatics 4: 259-263.
-
(2006)
Genomics Proteomics Bioinformatics
, vol.4
, pp. 259-263
-
-
Zhang, Z.1
Li, J.2
Zhao, X.Q.3
Wang, J.4
Wong, G.K.5
Yu, J.6
-
82
-
-
77952694676
-
Identification and analysis of unitary pseudogenes: Historic and contemporary gene losses in humans and other primates
-
Zhang ZD, Frankish A, Hunt T., Harrow J, Gerstein M. 2010. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Genome Biol 11: R26.
-
(2010)
Genome Biol
, vol.11
-
-
Zhang, Z.D.1
Frankish, A.2
Hunt, T.3
Harrow, J.4
Gerstein, M.5
|