-
2
-
-
79956226797
-
Mitogen-activated protein kinase signalling in plants under abiotic stress Plant Signal Behav
-
Sinha AK, Jaggi M, Raghuram B, Tuteja N, (2011) Mitogen-activated protein kinase signalling in plants under abiotic stress Plant Signal Behav. 6: 196-203.
-
(2011)
, vol.6
, pp. 196-203
-
-
Sinha, A.K.1
Jaggi, M.2
Raghuram, B.3
Tuteja, N.4
-
4
-
-
0038714319
-
Mitogen-activated protein kinase cascades in plants: a new nomenclature
-
MAPK Group
-
MAPK Group (2002) Mitogen-activated protein kinase cascades in plants: a new nomenclature. Trends Plant Sci 7: 301-308.
-
(2002)
Trends Plant Sci
, vol.7
, pp. 301-308
-
-
-
5
-
-
33646476164
-
Ancient signals: comparative genomics of plant MAPK and MAPKK gene families
-
Hamel LP, Nicole MC, Sritubtim S, Morency MJ, Ellis M, et al. (2006) Ancient signals: comparative genomics of plant MAPK and MAPKK gene families. Trends Plant Sci 11: 192-198.
-
(2006)
Trends Plant Sci
, vol.11
, pp. 192-198
-
-
Hamel, L.P.1
Nicole, M.C.2
Sritubtim, S.3
Morency, M.J.4
Ellis, M.5
-
6
-
-
77955942478
-
In-silico analysis reveals 75 members of mitogen-activated protein kinase kinase kinase gene family in rice
-
Rao KP, Richa T, Kumar K, Raghuram B, Sinha AK, (2010) In-silico analysis reveals 75 members of mitogen-activated protein kinase kinase kinase gene family in rice. DNA Res 17: 139-153.
-
(2010)
DNA Res
, vol.17
, pp. 139-153
-
-
Rao, K.P.1
Richa, T.2
Kumar, K.3
Raghuram, B.4
Sinha, A.K.5
-
7
-
-
57749106407
-
Comprehensive analysis of protein-protein interactions between Arabidopsis MAPKs and MAPK kinases helps define potential MAPK signalling modules
-
Lee JS, Huh KW, Bhargava A, Ellis BE, (2008) Comprehensive analysis of protein-protein interactions between Arabidopsis MAPKs and MAPK kinases helps define potential MAPK signalling modules. Plant Signal Behav 3: 1037-1041.
-
(2008)
Plant Signal Behav
, vol.3
, pp. 1037-1041
-
-
Lee, J.S.1
Huh, K.W.2
Bhargava, A.3
Ellis, B.E.4
-
8
-
-
58149498875
-
MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays
-
Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, et al. (2009) MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev 23: 80-92.
-
(2009)
Genes Dev
, vol.23
, pp. 80-92
-
-
Popescu, S.C.1
Popescu, G.V.2
Bachan, S.3
Zhang, Z.4
Gerstein, M.5
-
9
-
-
75749131083
-
Convergence and specificity in the Arabidopsis MAPK nexus
-
Andreasson E, Ellis B, (2010) Convergence and specificity in the Arabidopsis MAPK nexus. Trends in Plant Science 15: 106-113.
-
(2010)
Trends in Plant Science
, vol.15
, pp. 106-113
-
-
Andreasson, E.1
Ellis, B.2
-
10
-
-
84873118055
-
Signal convergence through the lenses of MAP kinases: paradigms of stress and hormone signaling in plants
-
DOI 10.1007/s11515-012-1207-1
-
Kumar K, Wankhede DP, Sinha AK (2012) Signal convergence through the lenses of MAP kinases: paradigms of stress and hormone signaling in plants. Frontiers in Biology DOI:10.1007/s11515-012-1207-1.
-
(2012)
Frontiers in Biology
-
-
Kumar, K.1
Wankhede, D.P.2
Sinha, A.K.3
-
11
-
-
0037008220
-
Two novel Mitogen-Activated Protein signalling components, OsMEK1 and OsMAP1, are involved in a moderate low temperature signaling pathway in rice
-
Wen JQ, Oono K, Imai R, (2002) Two novel Mitogen-Activated Protein signalling components, OsMEK1 and OsMAP1, are involved in a moderate low temperature signaling pathway in rice. Plant Physiol 129: 1880-1891.
-
(2002)
Plant Physiol
, vol.129
, pp. 1880-1891
-
-
Wen, J.Q.1
Oono, K.2
Imai, R.3
-
12
-
-
63549150374
-
A rice kinase-protein interaction map
-
Ding X, Richter T, Chen M, Fujii H, Seo YS, et al. (2009) A rice kinase-protein interaction map. Plant Physiol. 149: 1478-1492.
-
(2009)
Plant Physiol
, vol.149
, pp. 1478-1492
-
-
Ding, X.1
Richter, T.2
Chen, M.3
Fujii, H.4
Seo, Y.S.5
-
13
-
-
77955697556
-
A rice fungal MAMP responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis
-
Kishi-Kaboshi M, Okada K, Kurimoto L, Murakami S, Umezawa T, et al. (2010) A rice fungal MAMP responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis. Plant J 63: 599-612.
-
(2010)
Plant J
, vol.63
, pp. 599-612
-
-
Kishi-Kaboshi, M.1
Okada, K.2
Kurimoto, L.3
Murakami, S.4
Umezawa, T.5
-
14
-
-
84858310633
-
Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice
-
Xie G, Kato H, Imai R, (2012) Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice. Biochem J 443: 95-102.
-
(2012)
Biochem J
, vol.443
, pp. 95-102
-
-
Xie, G.1
Kato, H.2
Imai, R.3
-
15
-
-
84865842504
-
Rice mitogen-activated protein kinase interactome analysis using the yeast two-hybrid system
-
Singh R, Lee MO, Lee JE, Choi J, Park JH, et al. (2012) Rice mitogen-activated protein kinase interactome analysis using the yeast two-hybrid system. Plant Physiol 160: 477-488.
-
(2012)
Plant Physiol
, vol.160
, pp. 477-488
-
-
Singh, R.1
Lee, M.O.2
Lee, J.E.3
Choi, J.4
Park, J.H.5
-
16
-
-
0036606483
-
Principles of docking: an overview of search algorithms and a guide to scoring functions
-
Halperin I, Ma B, Wolfson H, Nussinov R, (2002) Principles of docking: an overview of search algorithms and a guide to scoring functions. Proteins 47: 409-443.
-
(2002)
Proteins
, vol.47
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
17
-
-
33646472024
-
High resolution protein-protein docking
-
Gray JJ, (2006) High resolution protein-protein docking. Curr Opin Struct Biol 16: 183-193.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 183-193
-
-
Gray, J.J.1
-
18
-
-
33644839662
-
Structural model of the mAb 806-EGFR complex using computational docking followed by computational and experimental mutagenesis
-
Sivasubramanian A, Chao G, Pressler HM, Wittrup KD, Gray JJ, (2006) Structural model of the mAb 806-EGFR complex using computational docking followed by computational and experimental mutagenesis. Structures 14: 401-414.
-
(2006)
Structures
, vol.14
, pp. 401-414
-
-
Sivasubramanian, A.1
Chao, G.2
Pressler, H.M.3
Wittrup, K.D.4
Gray, J.J.5
-
19
-
-
53249090374
-
Structure and mechanism of a transmission blocking vaccine candidate protein Pfs25 from P. falciparum: A molecular modeling and docking study
-
Sharma B, (2008) Structure and mechanism of a transmission blocking vaccine candidate protein Pfs25 from P. falciparum: A molecular modeling and docking study. In Silico Biol 8: 193-206.
-
(2008)
In Silico Biol
, vol.8
, pp. 193-206
-
-
Sharma, B.1
-
21
-
-
78751615740
-
Arsenic stress activates MAP kinase in rice roots and leaves
-
Rao KP, Vani G, Kumar K, Wankhede DP, Mishra M, et al. (2011) Arsenic stress activates MAP kinase in rice roots and leaves. Arch Biochem Biophys 506: 73-82.
-
(2011)
Arch Biochem Biophys
, vol.506
, pp. 73-82
-
-
Rao, K.P.1
Vani, G.2
Kumar, K.3
Wankhede, D.P.4
Mishra, M.5
-
22
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search program
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Miller W, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search program. Nucleic Acids Research 25: 3389-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Miller, W.5
-
23
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
24
-
-
0028871814
-
Evaluation of comparative protein modeling by MODELLER
-
Sali A, Potterton L, Yuan F, van Vlijmen H, Karplus M, (1995) Evaluation of comparative protein modeling by MODELLER. Proteins 23: 318-326.
-
(1995)
Proteins
, vol.23
, pp. 318-326
-
-
Sali, A.1
Potterton, L.2
Yuan, F.3
van Vlijmen, H.4
Karplus, M.5
-
25
-
-
0038187615
-
A protein-protein docking benchmark
-
Chen R, Mintseris J, Janin J, Weng Z, (2003) A protein-protein docking benchmark. Proteins 52: 88-91.
-
(2003)
Proteins
, vol.52
, pp. 88-91
-
-
Chen, R.1
Mintseris, J.2
Janin, J.3
Weng, Z.4
-
26
-
-
0037093643
-
Docking unbound proteins using shape complementarity, desolvation, and electrostatics
-
Chen R, Weng ZP, (2002) Docking unbound proteins using shape complementarity, desolvation, and electrostatics. Proteins 47: 281-294.
-
(2002)
Proteins
, vol.47
, pp. 281-294
-
-
Chen, R.1
Weng, Z.P.2
-
27
-
-
0242299200
-
RDOCK: refinement of rigid-body protein docking predictions
-
Li L, Chen R, Weng Z, (2003) RDOCK: refinement of rigid-body protein docking predictions. Proteins 53: 693-707.
-
(2003)
Proteins
, vol.53
, pp. 693-707
-
-
Li, L.1
Chen, R.2
Weng, Z.3
-
28
-
-
50949104270
-
Differential regulation of rice mitogen activated protein kinase kinase (MKK) by abiotic stress
-
Kumar K, Rao KP, Sharma P, Sinha AK, (2008) Differential regulation of rice mitogen activated protein kinase kinase (MKK) by abiotic stress. Plant Physiol Biochem 46: 891-897.
-
(2008)
Plant Physiol Biochem
, vol.46
, pp. 891-897
-
-
Kumar, K.1
Rao, K.P.2
Sharma, P.3
Sinha, A.K.4
-
29
-
-
0026610767
-
Assessment of protein models with three dimensional profiles
-
Lüthy R, Bowie JU, Eisenberg D, (1992) Assessment of protein models with three dimensional profiles. Nature 356: 83-85.
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Lüthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
30
-
-
34248513078
-
ZRANK: reranking protein docking predictions with an optimized energy function
-
Pierce B, Weng Z, (2007) ZRANK: reranking protein docking predictions with an optimized energy function. Proteins 67: 1078-1086.
-
(2007)
Proteins
, vol.67
, pp. 1078-1086
-
-
Pierce, B.1
Weng, Z.2
-
31
-
-
0035896038
-
Docking ligands onto binding site representations derived from proteins built by homology modelling
-
Schafferhans A, Klebe G, (2001) Docking ligands onto binding site representations derived from proteins built by homology modelling. J Mol Biol 307: 407-427.
-
(2001)
J Mol Biol
, vol.307
, pp. 407-427
-
-
Schafferhans, A.1
Klebe, G.2
-
32
-
-
21644470603
-
ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5
-
Wiehe K, Pierce B, Mintseris J, Tong WW, Anderson R, et al. (2005) ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins 60: 207-213.
-
(2005)
Proteins
, vol.60
, pp. 207-213
-
-
Wiehe, K.1
Pierce, B.2
Mintseris, J.3
Tong, W.W.4
Anderson, R.5
-
33
-
-
36749098356
-
The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI
-
Wiehe K, Pierce B, Tong WW, Hwang H, Mintseris J, et al. (2007) The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI. Proteins 69: 719-725.
-
(2007)
Proteins
, vol.69
, pp. 719-725
-
-
Wiehe, K.1
Pierce, B.2
Tong, W.W.3
Hwang, H.4
Mintseris, J.5
-
34
-
-
77949382951
-
Present and future challenges and limitations in protein-protein docking
-
Pons C, Grosdidier S, Solernou A, Pérez-Cano L, Fernández-Recio J, (2010) Present and future challenges and limitations in protein-protein docking. Proteins 78: 95-108.
-
(2010)
Proteins
, vol.78
, pp. 95-108
-
-
Pons, C.1
Grosdidier, S.2
Solernou, A.3
Pérez-Cano, L.4
Fernández-Recio, J.5
-
35
-
-
0032538398
-
Identification of a possible MAP kinase cascade in Arabidopsis thaliana based on pairwise yeast two-hybrid analysis and functional complementation tests of yeast mutants
-
Mizoguchi T, Ichimura K, Irie K, Morris P, Giraudat J, et al. (1998) Identification of a possible MAP kinase cascade in Arabidopsis thaliana based on pairwise yeast two-hybrid analysis and functional complementation tests of yeast mutants. FEBS Lett 437: 56-60.
-
(1998)
FEBS Lett
, vol.437
, pp. 56-60
-
-
Mizoguchi, T.1
Ichimura, K.2
Irie, K.3
Morris, P.4
Giraudat, J.5
-
36
-
-
37249020912
-
The Arabidopsis mitogen-activated protein kinase kinase MKK3 is upstream of group C mitogen-activated protein kinases and participates in pathogen signaling
-
Doczi R, Brader G, Pettko-Szandtner A, Rajh I, Djamei A, et al. (2007) The Arabidopsis mitogen-activated protein kinase kinase MKK3 is upstream of group C mitogen-activated protein kinases and participates in pathogen signaling. Plant Cell 19: 3266-3279.
-
(2007)
Plant Cell
, vol.19
, pp. 3266-3279
-
-
Doczi, R.1
Brader, G.2
Pettko-Szandtner, A.3
Rajh, I.4
Djamei, A.5
-
37
-
-
48149106793
-
Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes
-
Colcombet J, Hirt H (2008) Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes. Biochem J 413, 217-226.
-
(2008)
Biochem J
, vol.413
, pp. 217-226
-
-
Colcombet, J.1
Hirt, H.2
-
38
-
-
32444442870
-
The Ste5 scaffold allosterically modulates signaling output of the yeast mating pathway
-
Chen R, Weng ZP (2002) Docking unbound proteins using shape complementarity, desolvation, and electrostatics. Proteins 47: 281-294
-
Bhattacharyya RP, Remenyi A, Good MC, Bashor CJ, Falick AM, et al. (2006) The Ste5 scaffold allosterically modulates signaling output of the yeast mating pathway. Science 311: 822-26Chen R, Weng ZP (2002) Docking unbound proteins using shape complementarity, desolvation, and electrostatics. Proteins 47: 281-294.
-
(2006)
Science
, vol.311
, pp. 822-826
-
-
Bhattacharyya, R.P.1
Remenyi, A.2
Good, M.C.3
Bashor, C.J.4
Falick, A.M.5
-
39
-
-
0035971144
-
A conserved docking site in MEKs mediates high-affinity binding to MAP kinases and cooperates with a scaffold protein to enhance signal transmission
-
Bardwell AJ, Flatauer LJ, Matsukuma K, Thorner J, Bardwell L (2001) A conserved docking site in MEKs mediates high-affinity binding to MAP kinases and cooperates with a scaffold protein to enhance signal transmission. J Biol Chem 276, 10374-10386.
-
(2001)
J Biol Chem
, vol.276
, pp. 10374-10386
-
-
Bardwell, A.J.1
Flatauer, L.J.2
Matsukuma, K.3
Thorner, J.4
Bardwell, L.5
-
40
-
-
67649710849
-
Selectivity of docking sites in MAPK kinases
-
Bardwell AJ, Frankson E, Bardwell L, (2009) Selectivity of docking sites in MAPK kinases. J Biol Chem 284: 13165-13173.
-
(2009)
J Biol Chem
, vol.284
, pp. 13165-13173
-
-
Bardwell, A.J.1
Frankson, E.2
Bardwell, L.3
-
41
-
-
64049090878
-
Modularity of MAP kinases allows deformation of their signalling pathways
-
Mody A, Weiner J, Ramanathan S, (2009) Modularity of MAP kinases allows deformation of their signalling pathways. Nat Cell Biol 11: 484-491.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 484-491
-
-
Mody, A.1
Weiner, J.2
Ramanathan, S.3
|