-
1
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense ccomplementarity to lin-14
-
Lee RC, Feinbaum RL, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense ccomplementarity to lin-14. Cell 1993;75:843-54.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee R.C.8Feinbaum, R.L.1
Ambros, V.2
-
2
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart BJ, Slack FJ, Basson M, et al. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 2000;403:901-6.
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
-
4
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen X. Small RNAs and their roles in plant development. Annu Rev CellDev Biol 2009;25:21-44.
-
(2009)
Annu Rev CellDev Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
6
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009;136:669-87.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
7
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, et al. MicroRNA genes are transcribed by RNA polymerase II. EMBOJ 2004;23:4051-60.
-
(2004)
EMBOJ
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
-
8
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
Xie Z, Allen E, Fahlgren N, et al. Expression of Arabidopsis MIRNA genes. Plant Physiol 2005;138:2145-54.
-
(2005)
Plant Physiol
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
-
9
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li J, Song R, et al. CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 2002;12: 1484-95.
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
-
11
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute ccomplexes is directed by the 50 terminal nucleotide
-
Mi S, Cai T, Hu Y, et al. Sorting of small RNAs into Arabidopsis argonaute ccomplexes is directed by the 50 terminal nucleotide. Cell 2008;133:116-27.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
-
12
-
-
23844550243
-
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs
-
Baumberger N, Baulcombe DC. Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. ProcNatl Acad Sci USA 2005;102:11928-33.
-
(2005)
ProcNatl Acad Sci USA
, vol.102
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
13
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 2004;303:2022-5.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
14
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, et al. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005;121:207-21.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
-
15
-
-
67651156037
-
Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana
-
Alves LJr, Niemeier S., Hauenschild A, etal. Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Res 2009;37:4010-21.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4010-4021
-
-
Alves, L.1
Niemeier, S.2
Hauenschild, A.3
-
16
-
-
77954184918
-
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
-
Bonnet E, He Y, Billiau K, et al. TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. Bioinformatics 2010;26:1566-8.
-
(2010)
Bioinformatics
, vol.26
, pp. 1566-1568
-
-
Bonnet, E.1
He, Y.2
Billiau, K.3
-
17
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A, Johnson C, Mlotshwa S, et al. Computational prediction of miRNAs in Arabidopsis thaliana. GenomeRes 2005; 15:78-91.
-
(2005)
GenomeRes
, vol.15
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
-
18
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
-
Fahlgren N, Howell MD, Kasschau KD, et al. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One 2007;2:e219.
-
(2007)
PLoS One
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
-
19
-
-
33846120020
-
CSRDB: a small RNA integrated database and browser resource for cereals
-
Johnson C, Bowman L, Adai AT, et al. CSRDB: a small RNA integrated database and browser resource for cereals. Nucleic Acids Res 2007;35:D829-33.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Johnson, C.1
Bowman, L.2
Adai, A.T.3
-
20
-
-
33747849920
-
RNAhybrid: microRNA target prediction easy, fast and flexible
-
Kruger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 2006;34: W451-4.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kruger, J.1
Rehmsmeier, M.2
-
21
-
-
52949088691
-
A toolkit for analysing large-scale plant small RNA datasets
-
Moxon S, Schwach F, Dalmay T, et al. A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics 2008; 24:2252-3.
-
(2008)
Bioinformatics
, vol.24
, pp. 2252-2253
-
-
Moxon, S.1
Schwach, F.2
Dalmay, T.3
-
22
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, et al. Fast and effective prediction of microRNA/target duplexes. RNA 2004;10:1507-17.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
-
23
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, et al. Prediction of plant microRNA targets. Cell 2002;110:513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
-
24
-
-
78449293356
-
Target-align: a tool for plant microRNA target identification
-
Xie F, Zhang B. Target-align: a tool for plant microRNA target identification. Bioinformatics;26:3002-3.
-
Bioinformatics
, vol.26
, pp. 3002-3003
-
-
Xie, F.1
Zhang, B.2
-
25
-
-
23144458275
-
miRU: an automated plant miRNA target prediction server
-
Zhang Y. miRU: an automated plant miRNA target prediction server. Nucleic Acids Res 2005;33:W701-4.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Zhang, Y.1
-
26
-
-
84862176128
-
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
-
Vergoulis T, Vlachos IS, Alexiou P, et al. TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res 2012;40: D222-9.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Vergoulis, T.1
Vlachos, I.S.2
Alexiou, P.3
-
27
-
-
78651307694
-
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
-
Yang JH, Li JH, Shao P, etal. starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. NucleicAcidsRes 2011; 39:D202-9.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Yang, J.H.1
Li, J.H.2
Shao, P.3
-
29
-
-
65849520676
-
Current tools for the identification of miRNA genes and their targets
-
Mendes ND, Freitas AT, Sagot MF. Current tools for the identification of miRNA genes and their targets. Nucleic Acids Res 2009;37:2419-33.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2419-2433
-
-
Mendes, N.D.1
Freitas, A.T.2
Sagot, M.F.3
-
30
-
-
79960024314
-
Toward microRNA-mediated gene regulatory networks in plants
-
Meng Y, Shao C, Chen M. Toward microRNA-mediated gene regulatory networks in plants. Brief Bioinform 2011;12: 645-59.
-
(2011)
Brief Bioinform
, vol.12
, pp. 645-659
-
-
Meng, Y.1
Shao, C.2
Chen, M.3
-
31
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie Z, Kasschau KD, et al. Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 2002;297:2053-6.
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
-
32
-
-
43449091567
-
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
-
Addo-Quaye C, Eshoo TW, Bartel DP, et al. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 2008;18:758-62.
-
(2008)
Curr Biol
, vol.18
, pp. 758-762
-
-
Addo-Quaye, C.1
Eshoo, T.W.2
Bartel, D.P.3
-
33
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
German MA, Pillay M, Jeong DH, et al. Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 2008;26:941-6.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
-
34
-
-
44449142226
-
A link between RNA metabolism and silencing affecting Arabidopsis development
-
Gregory BD, O'Malley RC, Lister R, et al. A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell 2008;14:854-66.
-
(2008)
Dev Cell
, vol.14
, pp. 854-866
-
-
Gregory, B.D.1
O'Malley, R.C.2
Lister, R.3
-
35
-
-
49449088962
-
Sequencing sliced ends reveals microRNA targets
-
Henderson IR, Jacobsen SE. Sequencing sliced ends reveals microRNA targets. Nat Biotechnol 2008;26:881-2.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 881-882
-
-
Henderson, I.R.1
Jacobsen, S.E.2
-
36
-
-
77955475953
-
Expanding the microRNA targeting code
-
functional sites with centered pairing
-
Shin C, Nam JW, Farh KK, Chiang HR, Shkumatava A, Bartel DP. Expanding the microRNA targeting code: functional sites with centered pairing. Mol Cell;38: 789-802.
-
Mol Cell
, vol.38
, pp. 789-802
-
-
Shin, C.1
Nam, J.W.2
Farh, K.K.3
Chiang, H.R.4
Shkumatava, A.5
Bartel, D.P.6
-
38
-
-
63849207321
-
Construction of parallel analysis of RNA ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
-
German MA, Luo S, Schroth G, et al. Construction of parallel analysis of RNA ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protoc 2009;4:356-62.
-
(2009)
Nat Protoc
, vol.4
, pp. 356-362
-
-
German, M.A.1
Luo, S.2
Schroth, G.3
-
39
-
-
73249121905
-
Sliced microRNA targets and precise loop-first processing of 300 Shao et al
-
MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
-
Addo-Quaye C, Snyder JA, Park YB, et al. Sliced microRNA targets and precise loop-first processing of 300 Shao et al. MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA 2009;15:2112-21.
-
(2009)
RNA
, vol.15
, pp. 2112-2121
-
-
Addo-Quaye, C.1
Snyder, J.A.2
Park, Y.B.3
-
40
-
-
80053590658
-
Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation
-
Branscheid A, Devers EA, May P, et al. Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. PlantSignalBehav 2011;6:1609-11.
-
(2011)
Plant Signal Behav
, vol.6
, pp. 1609-1611
-
-
Branscheid, A.1
Devers, E.A.2
May, P.3
-
41
-
-
79961204641
-
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
-
Devers EA, Branscheid A, May P, et al. Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol 2011;156:1990-2010.
-
(2011)
Plant Physiol
, vol.156
, pp. 1990-2010
-
-
Devers, E.A.1
Branscheid, A.2
May, P.3
-
42
-
-
77952832325
-
Transcriptome-wide identification of microRNA targets in rice
-
Li YF, Zheng Y, Addo-Quaye C, et al. Transcriptome-wide identification of microRNA targets in rice. PlantJ 2010;62: 742-59.
-
(2010)
Plant J
, vol.62
, pp. 742-759
-
-
Li, Y.F.1
Zheng, Y.2
Addo-Quaye, C.3
-
43
-
-
77956584277
-
High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism
-
Meng Y, Gou L, Chen D, et al. High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism. J Exp Bot 2010;61: 3833-7.
-
(2010)
J Exp Bot
, vol.61
, pp. 3833-3837
-
-
Meng, Y.1
Gou, L.2
Chen, D.3
-
44
-
-
81255210925
-
Construction of microRNAand microRNA*-mediated regulatory networks in plants
-
Meng Y, Shao C, Gou L, etal. Construction of microRNAand microRNA*-mediated regulatory networks in plants. RNA Biol 2011;8:1124-1148.
-
(2011)
RNA Biol
, vol.8
, pp. 1124-1148
-
-
Meng, Y.1
Shao, C.2
Gou, L.3
-
45
-
-
77953489252
-
Identification of grapevine microRNAs and their targets using highthroughput sequencing and degradome analysis
-
Pantaleo V, Szittya G, Moxon S, et al. Identification of grapevine microRNAs and their targets using highthroughput sequencing and degradome analysis. Plant J 2010;62:960-76.
-
(2010)
Plant J
, vol.62
, pp. 960-976
-
-
Pantaleo, V.1
Szittya, G.2
Moxon, S.3
-
46
-
-
73249125240
-
Rice microRNA effector ccomplexes and targets
-
Wu L, Zhang Q, Zhou H, et al. Rice microRNA effector ccomplexes and targets. Plant Cell 2009;21:3421-35.
-
(2009)
Plant Cell
, vol.21
, pp. 3421-3435
-
-
Wu, L.1
Zhang, Q.2
Zhou, H.3
-
47
-
-
58049220318
-
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
-
Addo-Quaye C, Miller W, Axtell MJ. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics 2009;25:130-1.
-
(2009)
Bioinformatics
, vol.25
, pp. 130-131
-
-
Addo-Quaye, C.1
Miller, W.2
Axtell, M.J.3
-
48
-
-
84863238628
-
SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants
-
Zheng Y, Li YF, Sunkar R, et al. SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants. Nucleic Acids Res 2012;40:e28.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Zheng, Y.1
Li, Y.F.2
Sunkar, R.3
-
49
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MW, Bartel DP. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004;14:787-99.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
50
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J, et al. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 2006;20:3407-25.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
-
51
-
-
84861526539
-
SoMART: a web server for plant miRNA, tasiRNA and target gene analysis
-
DOI: 10.1111/j.1365-313X.2012.04922.x.
-
Li F, Orban R, Baker B. SoMART: a web server for plant miRNA, tasiRNA and target gene analysis. Plant J 2012. DOI: 10.1111/j.1365-313X.2012.04922.x.
-
(2012)
Plant J
-
-
Li, F.1
Orban, R.2
Baker, B.3
-
52
-
-
77951871117
-
Deep RNA sequencing at single base-pair resolution reveals high ccomplexity of the rice transcriptome
-
Zhang G, Guo G, Hu X, et al. Deep RNA sequencing at single base-pair resolution reveals high ccomplexity of the rice transcriptome. GenomeRes;20:646-54.
-
GenomeRes
, vol.20
, pp. 646-654
-
-
Zhang, G.1
Guo, G.2
Hu, X.3
-
53
-
-
33644876658
-
Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA
-
Nakano M, Nobuta K, Vemaraju K, etal. Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Res 2006;34: D731-5.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Nakano, M.1
Nobuta, K.2
Vemaraju, K.3
-
54
-
-
58149182724
-
NCBI GEO: archive for high-throughput functional genomic data
-
Barrett T, Troup DB, Wilhite SE, etal. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 2009;37:D885-90.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
-
55
-
-
0035180589
-
The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
-
Huala E, Dickerman AW, Garcia-Hernandez M, et al. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. NucleicAcidsRes 2001;29:102-5.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 102-105
-
-
Huala, E.1
Dickerman, A.W.2
Garcia-Hernandez, M.3
-
56
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, et al. Basic local alignment search tool. JMol Biol 1990;215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
-
57
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
Li R, Li Y, Kristiansen K, etal. SOAP: short oligonucleotide alignment program. Bioinformatics 2008;24:713-714.
-
(2008)
Bioinformatics
, vol.24
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
-
58
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009;10:R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
-
59
-
-
82755171888
-
The regulatory activities of plant microRNAs: a more dynamic perspective
-
Meng Y, Shao C, Wang H, etal. The regulatory activities of plant microRNAs: a more dynamic perspective. Plant Physiol 2011;157:1583-95.
-
(2011)
Plant Physiol
, vol.157
, pp. 1583-1595
-
-
Meng, Y.1
Shao, C.2
Wang, H.3
-
60
-
-
84855168259
-
MicroRNAs and their isomiRs function cooperatively to target common biological pathways
-
Cloonan N, Wani S, Xu Q, et al. MicroRNAs and their isomiRs function cooperatively to target common biological pathways. Genome Biol 2011;12:R126.
-
(2011)
Genome Biol
, vol.12
-
-
Cloonan, N.1
Wani, S.2
Xu, Q.3
-
62
-
-
75649089335
-
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
-
de Hoon MJ, Taft RJ, Hashimoto T, et al. Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Res 2010; 20:257-64.
-
(2010)
Genome Res
, vol.20
, pp. 257-264
-
-
de Hoon, M.J.1
Taft, R.J.2
Hashimoto, T.3
-
63
-
-
65849172363
-
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
-
Ebhardt HA, Tsang HH, Dai DC, et al. Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res 2009;37: 2461-70.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2461-2470
-
-
Ebhardt, H.A.1
Tsang, H.H.2
Dai, D.C.3
-
64
-
-
3342969381
-
RNA editing of a miRNA precursor
-
Luciano DJ, Mirsky H, Vendetti NJ, et al. RNA editing of a miRNA precursor. RNA 2004;10:1174-7.
-
(2004)
RNA
, vol.10
, pp. 1174-1177
-
-
Luciano, D.J.1
Mirsky, H.2
Vendetti, N.J.3
-
65
-
-
78651327631
-
PmiRKB: a plant microRNA knowledge base
-
Meng Y, Gou L, Chen D, et al. PmiRKB: a plant microRNA knowledge base. Nucleic Acids Res 2011;39: D181-7.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Meng, Y.1
Gou, L.2
Chen, D.3
-
66
-
-
34848865601
-
A-to-I editing challenger or ally to the microRNA process
-
Ohman M. A-to-I editing challenger or ally to the microRNA process. Biochimie 2007;89:1171-76.
-
(2007)
Biochimie
, vol.89
, pp. 1171-1176
-
-
Ohman, M.1
-
68
-
-
75649129754
-
Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway
-
Ghildiyal M, Xu J, Seitz H, et al. Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway. RNA 2010;16:43-56.
-
(2010)
RNA
, vol.16
, pp. 43-56
-
-
Ghildiyal, M.1
Xu, J.2
Seitz, H.3
-
69
-
-
41649089309
-
The regulatory activity of microRNA* species has substantial influence on microRNA and 30 UTR evolution
-
Okamura K, Phillips MD, Tyler DM, et al. The regulatory activity of microRNA* species has substantial influence on microRNA and 30 UTR evolution. Nat Struct Mol Biol 2008;15:354-63.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 354-363
-
-
Okamura, K.1
Phillips, M.D.2
Tyler, D.M.3
-
70
-
-
78751561955
-
Widespread regulatory activity of vertebrate microRNA* species
-
Yang JS, Phillips MD, Betel D, et al. Widespread regulatory activity of vertebrate microRNA* species. RNA 2011;17: 312-26.
-
(2011)
RNA
, vol.17
, pp. 312-326
-
-
Yang, J.S.1
Phillips, M.D.2
Betel, D.3
-
71
-
-
78650668809
-
miR-155 and its star-form partner miR-155* cooperatively regulate type I interferon production by human plasmacytoid dendritic cells
-
Zhou H, Huang X, Cui H, et al. miR-155 and its star-form partner miR-155* cooperatively regulate type I interferon production by human plasmacytoid dendritic cells. Blood 2010;116:5885-94.
-
(2010)
Blood
, vol.116
, pp. 5885-5894
-
-
Zhou, H.1
Huang X.8Cui, H.2
-
72
-
-
79955499404
-
Arabidopsis Argonaute 2 regulates innate immunity via miRNA393*-mediated silencing of a Golgi-localized SNARE gene, MEMB12
-
Zhang X, Zhao H, Gao S, et al. Arabidopsis Argonaute 2 regulates innate immunity via miRNA393*-mediated silencing of a Golgi-localized SNARE gene, MEMB12. MolCell 2011;42:356-66.
-
(2011)
Mol Cell
, vol.42
, pp. 356-366
-
-
Zhang, X.1
Zhao, H.2
Gao, S.3
-
73
-
-
32544440797
-
RNAshapes: an integrated RNA analysis package based on abstract shapes
-
Steffen P, Voss B, Rehmsmeier M, et al. RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics 2006;22:500-3.
-
(2006)
Bioinformatics
, vol.22
, pp. 500-503
-
-
Steffen, P.1
Voss, B.2
Rehmsmeier, M.3
-
74
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003;31:3429-31.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
75
-
-
34250832061
-
Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319
-
Palatnik JF, Wollmann H, Schommer C, etal. Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev Cell 2007;13:115-25.
-
(2007)
Dev Cell
, vol.13
, pp. 115-125
-
-
Palatnik, J.F.1
Wollmann, H.2
Schommer, C.3
-
76
-
-
77951974552
-
DNA methylation mediated by a microRNA pathway
-
Wu L, Zhou H, Zhang Q, etal. DNA methylation mediated by a microRNA pathway. Mol Cell 2010;38:465-75.
-
(2010)
Mol Cell
, vol.38
, pp. 465-475
-
-
Wu, L.1
Zhou, H.2
Zhang, Q.3
-
77
-
-
84862781522
-
Alternative mRNA processing increases the ccomplexity of microRNA-based gene regulation in Arabidopsis
-
Yang X, Zhang H, Li L. Alternative mRNA processing increases the ccomplexity of microRNA-based gene regulation in Arabidopsis. PlantJ 2012;70:421-31
-
(2012)
Plant J
, vol.70
, pp. 421-431
-
-
Yang, X.1
Zhang, H.2
Li, L.3
|