-
1
-
-
60149086351
-
Origin, biogenesis and activity of plant microRNAs
-
Voinnet O. Origin, biogenesis and activity of plant microRNAs. Cell 2009; 136:669-87.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
2
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ. Origins and mechanisms of miRNAs and siRNAs. Cell 2009; 136:642-55.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
3
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol J, Loedige I, Filipowicz W. The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 2010; 11:597-610.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
4
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen X. Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 2009; 25:21-44.
-
(2009)
Annu Rev Cell Dev Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
6
-
-
43449091567
-
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
-
Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 2008; 18:758-62.
-
(2008)
Curr Biol
, vol.18
, pp. 758-762
-
-
Addo-Quaye, C.1
Eshoo, T.W.2
Bartel, D.P.3
Axtell, M.J.4
-
7
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, et al. Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 2008; 26:941-6.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
Hetawal, A.4
Luo, S.5
Janardhanan, P.6
-
8
-
-
77952832325
-
Transcriptome-wide identification of microRNA targets in rice
-
Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, et al. Transcriptome-wide identification of microRNA targets in rice. Plant J 2010; 62:742-59.
-
(2010)
Plant J
, vol.62
, pp. 742-759
-
-
Li, Y.F.1
Zheng, Y.2
Addo-Quaye, C.3
Zhang, L.4
Saini, A.5
Jagadeeswaran, G.6
-
9
-
-
77951871117
-
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
-
Zhang G, Guo G, Hu X, Zhang Y, Li Q, Li R, et al. Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res 2010; 20:646-54.
-
(2010)
Genome Res
, vol.20
, pp. 646-654
-
-
Zhang, G.1
Guo, G.2
Hu, X.3
Zhang, Y.4
Li, Q.5
Li, R.6
-
10
-
-
84960125795
-
Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)
-
Zhou M, Gu L, Li P, Song X, Wei L, Chen Z, et al. Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica). Front Biol 2010; 5:67-90.
-
(2010)
Front Biol
, vol.5
, pp. 67-90
-
-
Zhou, M.1
Gu, L.2
Li, P.3
Song, X.4
Wei, L.5
Chen, Z.6
-
11
-
-
75649129754
-
Sorting of Drosophila small silencing RNAs partitions microRNA*strands into the RNA interference pathway
-
Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD. Sorting of Drosophila small silencing RNAs partitions microRNA*strands into the RNA interference pathway. RNA 2010; 16:43-56.
-
(2010)
RNA
, vol.16
, pp. 43-56
-
-
Ghildiyal, M.1
Xu, J.2
Seitz, H.3
Weng, Z.4
Zamore, P.D.5
-
12
-
-
41649089309
-
The regulatory activity of microRNA*species has substantial influence on microRNA and 3′ UTR evolution
-
DOI 10.1038/nsmb.1409, PII NSMB1409
-
Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, Lai EC. The regulatory activity of microRNA*species has substantial influence on microRNA and 3′ UTR evolution. Nat Struct Mol Biol 2008; 15:354-63. (Pubitemid 351483397)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.4
, pp. 354-363
-
-
Okamura, K.1
Phillips, M.D.2
Tyler, D.M.3
Duan, H.4
Chou, Y.-T.5
Lai, E.C.6
-
13
-
-
38149071979
-
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
-
DOI 10.1101/gr.6597907
-
Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC. Evolution, biogenesis, expression and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res 2007; 17:1850-64. (Pubitemid 351360008)
-
(2007)
Genome Research
, vol.17
, Issue.12
, pp. 1850-1864
-
-
Ruby, J.G.1
Stark, A.2
Johnston, W.K.3
Kellis, M.4
Bartel, D.P.5
Lai, E.C.6
-
14
-
-
77955328547
-
The Fate of miRNA*Strand through Evolutionary Analysis: Implication for Degradation As Merely Carrier Strand or Potential Regulatory Molecule?
-
Guo L, Lu ZH. The Fate of miRNA*Strand through Evolutionary Analysis: Implication for Degradation As Merely Carrier Strand or Potential Regulatory Molecule? PLoS One 2010; 5:11387.
-
(2010)
PLoS One
, vol.5
, pp. 11387
-
-
Guo, L.1
Lu, Z.H.2
-
15
-
-
78751561955
-
Widespread regulatory activity of vertebrate microRNA*species
-
Yang JS, Phillips MD, Betel D, Mu P, Ventura A, Siepel AC, et al. Widespread regulatory activity of vertebrate microRNA*species. RNA 2011; 17:312-26.
-
(2011)
RNA
, vol.17
, pp. 312-326
-
-
Yang, J.S.1
Phillips, M.D.2
Betel, D.3
Mu, P.4
Ventura, A.5
Siepel, A.C.6
-
16
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide
-
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, et al. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide. Cell 2008; 133:116-27.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
-
17
-
-
79961204641
-
Stars and symbiosis: MicroRNA- And microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
-
DOI: 10.1104/pp.111.172627
-
Devers EA, Branscheid A, May P, Krajinski F. Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol 2011; DOI: 10.1104/pp.111. 172627.
-
(2011)
Plant Physiol
-
-
Devers, E.A.1
Branscheid, A.2
May, P.3
Krajinski, F.4
-
18
-
-
63849207321
-
Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
-
German MA, Luo S, Schroth G, Meyers BC, Green PJ. Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protoc 2009; 4:356-62.
-
(2009)
Nat Protoc
, vol.4
, pp. 356-362
-
-
German, M.A.1
Luo, S.2
Schroth, G.3
Meyers, B.C.4
Green, P.J.5
-
19
-
-
0043123153
-
Vienna RNA secondary structure server
-
DOI 10.1093/nar/gkg599
-
Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003; 31:3429-31. (Pubitemid 37442172)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
21
-
-
58149182724
-
NCBI GEO: Archive for high-throughput functional genomic data
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, et al. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 2009; 37:885-90.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 885-890
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
-
22
-
-
46149088681
-
Plant ARGONAUTES
-
Vaucheret H. Plant ARGONAUTES. Trends Plant Sci 2008; 13:350-8.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 350-358
-
-
Vaucheret, H.1
-
23
-
-
23144458275
-
MiRU: An automated plant miRNA target prediction server
-
Zhang Y. miRU: an automated plant miRNA target prediction server. Nucleic Acids Res 2005; 33:701-4.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 701-704
-
-
Zhang, Y.1
-
24
-
-
79959967431
-
XC. psRNATarget: A plant small RNA target analysis server
-
Dai XB, Zhao P. XC. psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011; 39:155-9.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 155-159
-
-
Dai, X.B.1
Zhao, P.2
-
25
-
-
34250832061
-
Sequence and Expression Differences Underlie Functional Specialization of Arabidopsis MicroRNAs miR159 and miR319
-
DOI 10.1016/j.devcel.2007.04.012, PII S1534580707001591
-
Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, et al. Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev Cell 2007; 13:115-25. (Pubitemid 46972029)
-
(2007)
Developmental Cell
, vol.13
, Issue.1
, pp. 115-125
-
-
Palatnik, J.F.1
Wollmann, H.2
Schommer, C.3
Schwab, R.4
Boisbouvier, J.5
Rodriguez, R.6
Warthmann, N.7
Allen, E.8
Dezulian, T.9
Huson, D.10
Carrington, J.C.11
Weigel, D.12
-
26
-
-
33846926826
-
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination
-
DOI 10.1111/j.1365-313X.2006.02980.x
-
Reyes JL, Chua NH. ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J 2007; 49:592-606. (Pubitemid 46233079)
-
(2007)
Plant Journal
, vol.49
, Issue.4
, pp. 592-606
-
-
Reyes, J.L.1
Chua, N.-H.2
-
27
-
-
33745827407
-
GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers
-
DOI 10.1111/j.1365-313X.2006.02795.x
-
Tsuji H, Aya K, Ueguchi-Tanaka M, Shimada Y, Nakazono M, Watanabe R, et al. GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Plant J 2006; 47:427-44. (Pubitemid 44036411)
-
(2006)
Plant Journal
, vol.47
, Issue.3
, pp. 427-444
-
-
Tsuji, H.1
Aya, K.2
Ueguchi-Tanaka, M.3
Shimada, Y.4
Nakazono, M.5
Watanabe, R.6
Nishizawa, N.K.7
Gomi, K.8
Shimada, A.9
Kitano, H.10
Ashikari, M.11
Matsuoka, M.12
-
28
-
-
24944510549
-
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
-
DOI 10.1105/tpc.105.030841
-
Guo HS, Xie Q, Fei JF, Chua NH. microRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development. Plant Cell 2005; 17:1376-86. (Pubitemid 43138191)
-
(2005)
Plant Cell
, vol.17
, Issue.5
, pp. 1376-1386
-
-
Guo, H.-S.1
Xie, Q.2
Fei, J.-F.3
Chua, N.-H.4
-
29
-
-
24944443408
-
Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes
-
DOI 10.1242/dev.01942
-
Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC. Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 2005; 132:3657-68. (Pubitemid 41301103)
-
(2005)
Development
, vol.132
, Issue.16
, pp. 3657-3668
-
-
Williams, L.1
Grigg, S.P.2
Xie, M.3
Christensen, S.4
Fletcher, J.C.5
-
30
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie Z, Kasschau KD, Carrington JC. Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 2002; 297:2053-6.
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
31
-
-
0242361521
-
Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and lts APETALA2-Like Target Genes
-
DOI 10.1105/tpc.016238
-
Aukerman MJ, Sakai H. Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 2003; 15:2730-41. (Pubitemid 37470672)
-
(2003)
Plant Cell
, vol.15
, Issue.11
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
32
-
-
1642366133
-
A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development
-
DOI 10.1126/science.1088060
-
Chen X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 2004; 303:2022-5. (Pubitemid 38393278)
-
(2004)
Science
, vol.303
, Issue.5666
, pp. 2022-2025
-
-
Chen, X.1
-
33
-
-
73649091109
-
Control of cell proliferation in Arabidopsis thaliana by microRNA miR396
-
Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF. Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development 2010; 137:103-12.
-
(2010)
Development
, vol.137
, pp. 103-112
-
-
Rodriguez, R.E.1
Mecchia, M.A.2
Debernardi, J.M.3
Schommer, C.4
Weigel, D.5
Palatnik, J.F.6
-
34
-
-
78650665524
-
MiR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis
-
Wang L, Gu X, Xu D, Wang W, Wang H, Zeng M, et al. miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis. J Exp Bot 2011; 62:761-73.
-
(2011)
J Exp Bot
, vol.62
, pp. 761-773
-
-
Wang, L.1
Gu, X.2
Xu, D.3
Wang, W.4
Wang, H.5
Zeng, M.6
-
35
-
-
0035180589
-
The Arabidopsis Information Resource (TAIR): A comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
-
Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, et al. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis and visualization system for a model plant. Nucleic Acids Res 2001; 29:102-5. (Pubitemid 32062974)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 102-105
-
-
Huala, E.1
Dickerman, A.W.2
Garcia-Hernandez, M.3
Weems, D.4
Reiser, L.5
LaFond, F.6
Hanley, D.7
Kiphart, D.8
Zhuang, M.9
Huang, W.10
Mueller, L.A.11
Bhattacharyya, D.12
Bhaya, D.13
Sobral, B.W.14
Beavis, W.15
Meinke, D.W.16
Town, C.D.17
Somerville, C.18
Rhee, S.Y.19
-
36
-
-
34347328177
-
A conserved microRNA module exerts homeotic control over Petunia hybrida and Antirrhinum majus floral organ identity
-
DOI 10.1038/ng2056, PII NG2056
-
Cartolano M, Castillo R, Efremova N, Kuckenberg M, Zethof J, Gerats T, et al. A conserved microRNA module exerts homeotic control over Petunia hybrida and Antirrhinum majus floral organ identity. Nat Genet 2007; 39:901-5. (Pubitemid 47014492)
-
(2007)
Nature Genetics
, vol.39
, Issue.7
, pp. 901-905
-
-
Cartolano, M.1
Castillo, R.2
Efremova, N.3
Kuckenberg, M.4
Zethof, J.5
Gerats, T.6
Schwarz-Sommer, Z.7
Vandenbussche, M.8
-
37
-
-
57749110646
-
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance
-
DOI 10.1105/tpc.108.059444
-
Li WX, Oono Y, Zhu J, He XJ, Wu JM, Iida K, et al. The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 2008; 20:2238-51. (Pubitemid 352844522)
-
(2008)
Plant Cell
, vol.20
, Issue.8
, pp. 2238-2251
-
-
Li, W.-X.1
Oono, Y.2
Zhu, J.3
He, X.-J.4
Wu, J.-M.5
Iida, K.6
Lu, X.-Y.7
Cui, X.8
Jin, H.9
Zhu, J.-K.10
-
38
-
-
22144464033
-
Cloning and characterization of microRNAs from rice
-
DOI 10.1105/tpc.105.031682
-
Sunkar R, Girke T, Jain PK, Zhu JK. Cloning and characterization of microRNAs from rice. Plant Cell 2005; 17:1397-411. (Pubitemid 43138193)
-
(2005)
Plant Cell
, vol.17
, Issue.5
, pp. 1397-1411
-
-
Sunkar, R.1
Girke, T.2
Jain, P.K.3
Zhu, J.-K.4
-
39
-
-
0034897738
-
Plant development going MADS
-
DOI 10.1023/A:1010689126632
-
Jack T. Plant development going MADS. Plant Mol Biol 2001; 46:515-20. (Pubitemid 32739401)
-
(2001)
Plant Molecular Biology
, vol.46
, Issue.5
, pp. 515-520
-
-
Jack, T.1
-
40
-
-
72049120376
-
Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance
-
Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M, Bellini C. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell 2009; 21:3119-32.
-
(2009)
Plant Cell
, vol.21
, pp. 3119-3132
-
-
Gutierrez, L.1
Bussell, J.D.2
Pacurar, D.I.3
Schwambach, J.4
Pacurar, M.5
Bellini, C.6
-
41
-
-
34748913056
-
Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages
-
DOI 10.1111/j.1365-313X.2007.03218.x
-
Liu PP, Montgomery TA, Fahlgren N, Kasschau KD, Nonogaki H, Carrington JC. Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J 2007; 52:133-46. (Pubitemid 47476166)
-
(2007)
Plant Journal
, vol.52
, Issue.1
, pp. 133-146
-
-
Liu, P.-P.1
Montgomery, T.A.2
Fahlgren, N.3
Kasschau, K.D.4
Nonogaki, H.5
Carrington, J.C.6
-
42
-
-
77953193344
-
MiR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, et al. miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 2010; 22:1104-17.
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
-
43
-
-
33645967758
-
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
-
Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, et al. A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 2006; 312:436-9.
-
(2006)
Science
, vol.312
, pp. 436-439
-
-
Navarro, L.1
Dunoyer, P.2
Jay, F.3
Arnold, B.4
Dharmasiri, N.5
Estelle, M.6
-
44
-
-
77749264610
-
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana
-
Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, et al. Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc Natl Acad Sci USA 2010; 107:4477-82.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 4477-4482
-
-
Vidal, E.A.1
Araus, V.2
Lu, C.3
Parry, G.4
Green, P.J.5
Coruzzi, G.M.6
-
45
-
-
27744596243
-
Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis
-
Wang JW, Wang LJ, Mao YB, Cai WJ, Xue HW Chen XY. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell 2005; 17:2204-16.
-
(2005)
Plant Cell
, vol.17
, pp. 2204-2216
-
-
Wang, J.W.1
Wang, L.J.2
Mao, Y.B.3
Cai, W.J.4
Xue, H.W.5
Chen, X.Y.6
-
46
-
-
33645814822
-
'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'
-
Yang JH, Han SJ, Yoon EK, Lee WS. 'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'. Nucleic Acids Res 2006; 34:1892-9.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1892-1899
-
-
Yang, J.H.1
Han, S.J.2
Yoon, E.K.3
Lee, W.S.4
-
47
-
-
77349092849
-
Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
-
Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, et al. Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC genomics 2010; 11:52.
-
(2010)
BMC Genomics
, vol.11
, pp. 52
-
-
Jagadeeswaran, G.1
Zheng, Y.2
Sumathipala, N.3
Jiang, H.4
Arrese, E.L.5
Soulages, J.L.6
-
48
-
-
70449127022
-
Hierarchical rules for Argonaute loading in Drosophila
-
Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, et al. Hierarchical rules for Argonaute loading in Drosophila. Mol Cell 2009; 36:445-56.
-
(2009)
Mol Cell
, vol.36
, pp. 445-456
-
-
Czech, B.1
Zhou, R.2
Erlich, Y.3
Brennecke, J.4
Binari, R.5
Villalta, C.6
-
49
-
-
70449122099
-
Distinct mechanisms for microRNA strand selection by Drosophila Argonautes
-
Okamura K, Liu N, Lai EC. Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Mol Cell 2009; 36:431-44.
-
(2009)
Mol Cell
, vol.36
, pp. 431-444
-
-
Okamura, K.1
Liu, N.2
Lai, E.C.3
-
50
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
DOI 10.1038/ng1478
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 2004; 36:1282-90. (Pubitemid 39577936)
-
(2004)
Nature Genetics
, vol.36
, Issue.12
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.-H.4
Spatafora, J.W.5
Carrington, J.C.6
-
51
-
-
28944439309
-
Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
-
DOI 10.1016/j.cell.2005.11.023, PII S0092867405012729
-
Stark A, Brennecke J, Bushati N, Russell RB, Cohen SM. Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell 2005; 123:1133-46. (Pubitemid 41785426)
-
(2005)
Cell
, vol.123
, Issue.6
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
52
-
-
33745248430
-
MicroRNA target predictions in animals
-
Rajewsky N. microRNA target predictions in animals. Nat Genet 2006; 38:8-13.
-
(2006)
Nat Genet
, vol.38
, pp. 8-13
-
-
Rajewsky, N.1
-
53
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
DOI 10.1038/sj.emboj.7600385
-
Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, et al. microRNA genes are transcribed by RNA polymerase II. EMBO J 2004; 23:4051-60. (Pubitemid 39472426)
-
(2004)
EMBO Journal
, vol.23
, Issue.20
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.-H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
54
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
DOI 10.1104/pp.105.062943
-
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC. Expression of Arabidopsis MIRNA genes. Plant Physiol 2005; 138:2145-54. (Pubitemid 43733557)
-
(2005)
Plant Physiology
, vol.138
, Issue.4
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
Carrington, J.C.6
-
55
-
-
77956584277
-
High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism
-
Meng Y, Gou L, Chen D, Wu P, Chen M. High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism. J Exp Bot 2010; 61:3833-7.
-
(2010)
J Exp Bot
, vol.61
, pp. 3833-3837
-
-
Meng, Y.1
Gou, L.2
Chen, D.3
Wu, P.4
Chen, M.5
-
56
-
-
68749100821
-
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
-
Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS. The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 2009; 138:750-9.
-
(2009)
Cell
, vol.138
, pp. 750-759
-
-
Wu, G.1
Park, M.Y.2
Conway, S.R.3
Wang, J.W.4
Weigel, D.5
Poethig, R.S.6
-
57
-
-
34247369438
-
Redundancy and specialization among plant microRNAs: Role of the MIR164 family in developmental robustness
-
DOI 10.1242/dev.02817
-
Sieber P, Wellmer F, Gheyselinck J, Riechmann JL, Meyerowitz EM. Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness. Development 2007; 134:1051-60. (Pubitemid 46630073)
-
(2007)
Development
, vol.134
, Issue.6
, pp. 1051-1060
-
-
Sieber, P.1
Wellmer, F.2
Gheyselinck, J.3
Riechmann, J.L.4
Meyerowitz, E.M.5
-
58
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403-10.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
59
-
-
33644876658
-
Plant MPSS databases: Signature-based transcriptional resources for analyses of mRNA and small RNA
-
Nakano M, Nobuta K, Vemaraju K, Tej SS, Skogen JW, Meyers BC. Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Res 2006; 34:731-5.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 731-735
-
-
Nakano, M.1
Nobuta, K.2
Vemaraju, K.3
Tej, S.S.4
Skogen, J.W.5
Meyers, B.C.6
-
60
-
-
79960024314
-
Toward microRNA-mediated gene regulatory networks in plants
-
DOI:10.1093/bib/bbq091
-
Meng Y, Shao C, Chen M. Toward microRNA-mediated gene regulatory networks in plants. Brief Bioinform 2011; DOI:10.1093/bib/bbq091.
-
(2011)
Brief Bioinform
-
-
Meng, Y.1
Shao, C.2
Chen, M.3
-
61
-
-
34547799698
-
Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
-
Zhou X, Su Z. EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species. BMC genomics 2007; 8:246.
-
(2007)
BMC Genomics
, vol.8
, pp. 246
-
-
Zhou, X.1
Su, Z.2
Easy, G.O.3
-
62
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003; 13:2498-504. (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
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