-
1
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie ZX, Gustafson AM, Sung GH, Spatafora JW, Carrington JC (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36: 1282-1290.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.X.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
2
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie ZX, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.X.2
Gustafson, A.M.3
Carrington, J.C.4
-
3
-
-
34547668337
-
Common functions for diverse small RNAs of land plants
-
Axtell MJ, Snyder JA, Bartel DP (2007) Common functions for diverse small RNAs of land plants. Plant Cell 19: 1750-1769.
-
(2007)
Plant Cell
, vol.19
, pp. 1750-1769
-
-
Axtell, M.J.1
Snyder, J.A.2
Bartel, D.P.3
-
4
-
-
7744223490
-
MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome
-
Bao N, Lye KW, Barton MK (2004) MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev Cell 7: 653-662.
-
(2004)
Dev Cell
, vol.7
, pp. 653-662
-
-
Bao, N.1
Lye, K.W.2
Barton, M.K.3
-
5
-
-
41149120780
-
Conservation and divergence of microRNAs in Populus
-
Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE (2007) Conservation and divergence of microRNAs in Populus. BMC Genomics 8: 481.
-
(2007)
BMC Genomics
, vol.8
, pp. 481
-
-
Barakat, A.1
Wall, P.K.2
Diloreto, S.3
Depamphilis, C.W.4
Carlson, J.E.5
-
6
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK (2005) Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123: 1279-1291.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
7
-
-
0034636023
-
Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers
-
Bowe LM, Gwe′naële C, dePamphilis CW (2000) Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc Natl Acad Sci USA 97: 4092-4097.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 4092-4097
-
-
Bowe, L.M.1
Gwenaële, C.2
dePamphilis, C.W.3
-
8
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O (2008) Widespread translational inhibition by plant miRNAs and siRNAs. Science 320: 1185-1190.
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
9
-
-
1442305898
-
RNA silencing genes control de novo DNA methylation
-
Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE (2004) RNA silencing genes control de novo DNA methylation. Science 303: 1336.
-
(2004)
Science
, vol.303
, pp. 1336
-
-
Chan, S.W.1
Zilberman, D.2
Xie, Z.3
Johansen, L.K.4
Carrington, J.C.5
Jacobsen, S.E.6
-
10
-
-
35348996554
-
Specialization and evolution of endogenous small RNA pathways
-
Chapman EJ, Carrington JC (2007) Specialization and evolution of endogenous small RNA pathways. Nat Rev Genet 8: 884-896.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 884-896
-
-
Chapman, E.J.1
Carrington, J.C.2
-
11
-
-
78650514497
-
siRNAs from miRNA sites mediate DNA methylation of target genes
-
Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H (2010) siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Res 38: 6883-6894.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 6883-6894
-
-
Chellappan, P.1
Xia, J.2
Zhou, X.3
Gao, S.4
Zhang, X.5
Coutino, G.6
Vazquez, F.7
Zhang, W.8
Jin, H.9
-
12
-
-
77955418697
-
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
-
Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC (2010) Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol 17: 997-1003.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 997-1003
-
-
Cuperus, J.T.1
Carbonell, A.2
Fahlgren, N.3
Garcia-Ruiz, H.4
Burke, R.T.5
Takeda, A.6
Sullivan, C.M.7
Gilbert, S.D.8
Montgomery, T.A.9
Carrington, J.C.10
-
13
-
-
84856067479
-
The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
-
De Paola D, Cattonaro F, Pignone D, Sonnante G (2012) The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis. BMC Genomics 13: 41.
-
(2012)
BMC Genomics
, vol.13
, pp. 41
-
-
De Paola, D.1
Cattonaro, F.2
Pignone, D.3
Sonnante, G.4
-
14
-
-
33745916446
-
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense
-
Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O (2006) Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313: 68-71.
-
(2006)
Science
, vol.313
, pp. 68-71
-
-
Deleris, A.1
Gallego-Bartolome, J.2
Bao, J.3
Kasschau, K.D.4
Carrington, J.C.5
Voinnet, O.6
-
15
-
-
47949086531
-
Conifers have a unique small RNA silencing signature
-
Dolgosheina EV, Morin RD, Aksay G, Sahinalp SC, Magrini V, Mardis ER, Mattsson J, Unrau PJ (2008) Conifers have a unique small RNA silencing signature. RNA 14: 1508-1515.
-
(2008)
Rna
, vol.14
, pp. 1508-1515
-
-
Dolgosheina, E.V.1
Morin, R.D.2
Aksay, G.3
Sahinalp, S.C.4
Magrini, V.5
Mardis, E.R.6
Mattsson, J.7
Unrau, P.J.8
-
16
-
-
34347342782
-
Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways
-
Dunoyer P, Himber C, Ruiz-Ferrer V, Alioua A, Voinnet O (2007) Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways. Nat Genet 39: 848-856.
-
(2007)
Nat Genet
, vol.39
, pp. 848-856
-
-
Dunoyer, P.1
Himber, C.2
Ruiz-Ferrer, V.3
Alioua, A.4
Voinnet, O.5
-
17
-
-
33646165249
-
Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis
-
Fahlgren N, Montgomery TA, Howell MD, Allen E, Dvorak SK, Alexander AL, Carrington JC (2006) Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Curr Biol 16: 939-944.
-
(2006)
Curr Biol
, vol.16
, pp. 939-944
-
-
Fahlgren, N.1
Montgomery, T.A.2
Howell, M.D.3
Allen, E.4
Dvorak, S.K.5
Alexander, A.L.6
Carrington, J.C.7
-
18
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC (2007) High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS ONE 2: e219.
-
(2007)
PLoS ONE
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
Carrington, J.C.11
-
19
-
-
61849147413
-
Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173
-
Felippes FF, Weigel D (2009) Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. EMBO Rep 10: 264-270.
-
(2009)
EMBO Rep
, vol.10
, pp. 264-270
-
-
Felippes, F.F.1
Weigel, D.2
-
20
-
-
58449134534
-
Small silencing RNAs: an expanding universe
-
Ghildiyal M, Zamore PD (2009) Small silencing RNAs: an expanding universe. Nat Rev Genet 10: 94-108.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
21
-
-
0037252684
-
Rfam: an RNA family database
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR (2003) Rfam: an RNA family database. Nucleic Acids Res 31: 439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
22
-
-
26944441255
-
Dicing and slicing: the core machinery of the RNA interference pathway
-
Hammond SM (2005) Dicing and slicing: the core machinery of the RNA interference pathway. FEBS Lett 579: 5822-5829.
-
(2005)
FEBS Lett
, vol.579
, pp. 5822-5829
-
-
Hammond, S.M.1
-
23
-
-
34250717043
-
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting
-
Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC (2007) Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell 19: 926-942.
-
(2007)
Plant Cell
, vol.19
, pp. 926-942
-
-
Howell, M.D.1
Fahlgren, N.2
Chapman, E.J.3
Cumbie, J.S.4
Sullivan, C.M.5
Givan, S.A.6
Kasschau, K.D.7
Carrington, J.C.8
-
25
-
-
42349111552
-
A universal classification of eukaryotic transposable elements implemented in Repbase
-
(author reply 414)
-
Kapitonov VV, Jurka J (2008) A universal classification of eukaryotic transposable elements implemented in Repbase. Nat Rev Genet 9: 411-412 (author reply 414).
-
(2008)
Nat Rev Genet
, vol.9
, pp. 411-412
-
-
Kapitonov, V.V.1
Jurka, J.2
-
26
-
-
33845202133
-
A pathogen-inducible endogenous siRNA in plant immunity
-
Katiyar-Agarwal S, Morgan R, Dahlbeck D, Borsani O, Villegas A Jr, Zhu JK, Staskawicz BJ, Jin H (2006) A pathogen-inducible endogenous siRNA in plant immunity. Proc Natl Acad Sci USA 103: 18002-18007.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18002-18007
-
-
Katiyar-Agarwal, S.1
Morgan, R.2
Dahlbeck, D.3
Borsani, O.4
Villegas Jr., A.5
Zhu, J.K.6
Staskawicz, B.J.7
Jin, H.8
-
27
-
-
73149089202
-
Transcriptional control of gene expression by microRNAs
-
Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W (2010) Transcriptional control of gene expression by microRNAs. Cell 140: 111-122.
-
(2010)
Cell
, vol.140
, pp. 111-122
-
-
Khraiwesh, B.1
Arif, M.A.2
Seumel, G.I.3
Ossowski, S.4
Weigel, D.5
Reski, R.6
Frank, W.7
-
28
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-D157.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
29
-
-
80255140514
-
DNA methylation in genomes of several annual herbaceous and woody perennial plants of varying ploidy as detected by MSAP
-
Li A, Hu BQ, Xue ZY, Chen L, Wang WX, Song WQ, Chen CB, Wang CG (2011a) DNA methylation in genomes of several annual herbaceous and woody perennial plants of varying ploidy as detected by MSAP. Plant Mol Biol Rep 29: 784-793.
-
(2011)
Plant Mol Biol Rep
, vol.29
, pp. 784-793
-
-
Li, A.1
Hu, B.Q.2
Xue, Z.Y.3
Chen, L.4
Wang, W.X.5
Song, W.Q.6
Chen, C.B.7
Wang, C.G.8
-
30
-
-
79960503618
-
Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica
-
Li B, Qin Y, Duan H, Yin W, Xia X (2011b) Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica. J Exp Bot 62: 3765-3779.
-
(2011)
J Exp Bot
, vol.62
, pp. 3765-3779
-
-
Li, B.1
Qin, Y.2
Duan, H.3
Yin, W.4
Xia, X.5
-
31
-
-
24644490196
-
Elucidation of the small RNA component of the transcriptome
-
Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ (2005) Elucidation of the small RNA component of the transcriptome. Science 309: 1567-1569.
-
(2005)
Science
, vol.309
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Haudenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
32
-
-
34548491177
-
MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
-
Lu SF, Sun YH, Amerson H, Chiang VL (2007) MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development. Plant J 51: 1077-1098.
-
(2007)
Plant J
, vol.51
, pp. 1077-1098
-
-
Lu, S.F.1
Sun, Y.H.2
Amerson, H.3
Chiang, V.L.4
-
33
-
-
33646082498
-
The evolution and diversification of Dicers in plants
-
Margis R, Fusaro AF, Smith NA, Curtin SJ, Watson JM, Finnegan EJ, Waterhouse PM (2006) The evolution and diversification of Dicers in plants. FEBS Lett 580: 2442-2450.
-
(2006)
FEBS Lett
, vol.580
, pp. 2442-2450
-
-
Margis, R.1
Fusaro, A.F.2
Smith, N.A.3
Curtin, S.J.4
Watson, J.M.5
Finnegan, E.J.6
Waterhouse, P.M.7
-
34
-
-
77953193344
-
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A (2010) miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 22: 1104-1117.
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
Nussaume, L.7
Crespi, M.D.8
Maizel, A.9
-
35
-
-
34848904239
-
Targets of RNA-directed DNA methylation
-
Matzke M, Kanno T, Huettel B, Daxinger L, Matzke AJ (2007) Targets of RNA-directed DNA methylation. Curr Opin Plant Biol 10: 512-519.
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 512-519
-
-
Matzke, M.1
Kanno, T.2
Huettel, B.3
Daxinger, L.4
Matzke, A.J.5
-
36
-
-
65249148019
-
RNA-mediated chromatin-based silencing in plants
-
Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJ (2009) RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 21: 367-376.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 367-376
-
-
Matzke, M.1
Kanno, T.2
Daxinger, L.3
Huettel, B.4
Matzke, A.J.5
-
37
-
-
41649102715
-
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
-
Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ (2008) Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res 18: 571-584.
-
(2008)
Genome Res
, vol.18
, pp. 571-584
-
-
Morin, R.D.1
Aksay, G.2
Dolgosheina, E.3
Ebhardt, H.A.4
Magrini, V.5
Mardis, E.R.6
Sahinalp, S.C.7
Unrau, P.J.8
-
38
-
-
76249125348
-
Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypiumhirsutum L.)
-
Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ (2009) Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypiumhirsutum L.). Genome Biol 10: R122.
-
(2009)
Genome Biol
, vol.10
-
-
Pang, M.1
Woodward, A.W.2
Agarwal, V.3
Guan, X.4
Ha, M.5
Ramachandran, V.6
Chen, X.7
Triplett, B.A.8
Stelly, D.M.9
Chen, Z.J.10
-
39
-
-
77953489252
-
Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
-
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J (2010) Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 62: 960-976.
-
(2010)
Plant J
, vol.62
, pp. 960-976
-
-
Pantaleo, V.1
Szittya, G.2
Moxon, S.3
Miozzi, L.4
Moulton, V.5
Dalmay, T.6
Burgyan, J.7
-
40
-
-
0001553055
-
A critical review of larch hybridization and its incidence on breeding strategies
-
Pâques LE (1989) A critical review of larch hybridization and its incidence on breeding strategies. Ann. Sci. For. 46: 141-153.
-
(1989)
Ann. Sci. For.
, vol.46
, pp. 141-153
-
-
Pâques, L.E.1
-
41
-
-
4644286235
-
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis
-
Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS (2004) SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev 18: 2368-2379.
-
(2004)
Genes Dev
, vol.18
, pp. 2368-2379
-
-
Peragine, A.1
Yoshikawa, M.2
Wu, G.3
Albrecht, H.L.4
Poethig, R.S.5
-
42
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J et al (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20: 3407-3425.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
-
44
-
-
77952172676
-
The role of actin isoforms in somatic embryogenesis in Norway spruce
-
Schwarzerova K, Vondrakova Z, Fischer L, Borikova P, Bellinvia E, Eliasova K, Havelkova L, Fiserova J, Vagner M, Opatrny Z (2010) The role of actin isoforms in somatic embryogenesis in Norway spruce. BMC Plant Biol 10: 89.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 89
-
-
Schwarzerova, K.1
Vondrakova, Z.2
Fischer, L.3
Borikova, P.4
Bellinvia, E.5
Eliasova, K.6
Havelkova, L.7
Fiserova, J.8
Vagner, M.9
Opatrny, Z.10
-
45
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin RK, Vaughn M, Borges F, Tanurdzic M, Becker JD, Feijo JA, Martienssen RA (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdzic, M.4
Becker, J.D.5
Feijo, J.A.6
Martienssen, R.A.7
-
46
-
-
66449090046
-
Small RNA analysis in Petunia hybrida identifies unusual tissue-specific expression patterns of conserved miRNAs and of a 24mer RNA
-
Tedder P, Zubko E, Westhead DR, Meyer P (2009) Small RNA analysis in Petunia hybrida identifies unusual tissue-specific expression patterns of conserved miRNAs and of a 24mer RNA. RNA 15: 1012-1020.
-
(2009)
Rna
, vol.15
, pp. 1012-1020
-
-
Tedder, P.1
Zubko, E.2
Westhead, D.R.3
Meyer, P.4
-
47
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs
-
Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crete P (2004) Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell 16: 69-79.
-
(2004)
Mol Cell
, vol.16
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
Mallory, A.C.6
Hilbert, J.L.7
Bartel, D.P.8
Crete, P.9
-
48
-
-
56649102410
-
Evolution of Arabidopsis MIR genes generates novel microRNA classes
-
Vazquez F, Blevins T, Ailhas J, Boller T, Meins F Jr (2008) Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res 36: 6429-6438.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6429-6438
-
-
Vazquez, F.1
Blevins, T.2
Ailhas, J.3
Boller, T.4
Meins Jr., F.5
-
49
-
-
66149176899
-
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
-
Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi Y, Liu XS, Deng XW (2009) Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 21: 1053-1069.
-
(2009)
Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.1
Elling, A.A.2
Li, X.3
Li, N.4
Peng, Z.5
He, G.6
Sun, H.7
Qi, Y.8
Liu, X.S.9
Deng, X.W.10
-
50
-
-
33644850032
-
Nomenclature and functions of RNA-directed RNA polymerases
-
Wassenegger M, Krczal G (2006) Nomenclature and functions of RNA-directed RNA polymerases. Trends Plant Sci 11: 142-151.
-
(2006)
Trends Plant Sci
, vol.11
, pp. 142-151
-
-
Wassenegger, M.1
Krczal, G.2
-
51
-
-
22144433672
-
A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes
-
Williams L, Carles CC, Osmont KS, Fletcher JC (2005) A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc Natl Acad Sci USA 102: 9703-9708.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9703-9708
-
-
Williams, L.1
Carles, C.C.2
Osmont, K.S.3
Fletcher, J.C.4
-
52
-
-
77951974552
-
DNA methylation mediated by a microRNA pathway
-
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y (2010) DNA methylation mediated by a microRNA pathway. Mol Cell 38: 465-475.
-
(2010)
Mol Cell
, vol.38
, pp. 465-475
-
-
Wu, L.1
Zhou, H.2
Zhang, Q.3
Zhang, J.4
Ni, F.5
Liu, C.6
Qi, Y.7
-
53
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2: E104.
-
(2004)
PLoS Biol
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
54
-
-
77955759055
-
MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
-
Yakovlev IA, Fossdal CG, Johnsen O (2010) MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce. New Phytol 187: 1154-1169.
-
(2010)
New Phytol
, vol.187
, pp. 1154-1169
-
-
Yakovlev, I.A.1
Fossdal, C.G.2
Johnsen, O.3
-
55
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang BH, Pan XP, Cannon CH, Cobb GP, Anderson TA (2006) Conservation and divergence of plant microRNA genes. Plant J 46: 243-259.
-
(2006)
Plant J
, vol.46
, pp. 243-259
-
-
Zhang, B.H.1
Pan, X.P.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
56
-
-
84864359077
-
Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis
-
Zhang J, Zhang S, Han S, Wu T, Li X, Li W, Qi L (2012a) Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis. Planta 236: 647-657.
-
(2012)
Planta
, vol.236
, pp. 647-657
-
-
Zhang, J.1
Zhang, S.2
Han, S.3
Wu, T.4
Li, X.5
Li, W.6
Qi, L.7
-
57
-
-
84865641844
-
Transcriptome profiling and in silico analysis of somatic embryos in Japanese larch (Larix leptolepis)
-
Zhang Y, Zhang S, Han S, Li X, Qi L (2012b) Transcriptome profiling and in silico analysis of somatic embryos in Japanese larch (Larix leptolepis). Plant Cell Rep 31: 1637-1657.
-
(2012)
Plant Cell Rep
, vol.31
, pp. 1637-1657
-
-
Zhang, Y.1
Zhang, S.2
Han, S.3
Li, X.4
Qi, L.5
|