Pathogen-host-environment interplay and disease emergence

Emerging Microbes and Infections

Volumn 2, Issue , 2013, Pages

  Engering, Anneke ^a   Hogerwerf, Lenny ^a,b   Slingenbergh, Jan ^a  

^a FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS   (Italy)

^b UTRECHT UNIVERSITY   (Netherlands)

Author keywords

Drivers; Geographic invasion; Species jumps; Virulence; Zoonoses

Indexed keywords

2009 H1N1 INFLUENZA; ADAPTATION; ANTIBIOTIC RESISTANCE; CONCEPTUAL FRAMEWORK; DISEASE ASSOCIATION; DISEASE CARRIER; DISEASE TRANSMISSION; ECONOMIC DEVELOPMENT; HOST PATHOGEN ENVIRONMENT INTERACTION; HUMAN; HUMIDITY; INFECTION; NONHUMAN; PATHOGENESIS; POPULATION GROWTH; PRIORITY JOURNAL; REVIEW; SEASONAL VARIATION; TEMPERATURE; VIRULENCE; WILDLIFE;

EID: 84878399858     PISSN: None     EISSN: 22221751     Source Type: Journal    
DOI: 10.1038/emi.2013.5     Document Type: Review

References (103)

1. Woolhouse ME, Dye C. Population biology of emerging and re-emerging pathogens-preface. Philos Trans R Soc Lond B Biol Sci 2001; 356: 981-982.
2. Jones KE, Patel NG, Levy MA et al. Global trends in emerging infectious diseases. Nature 2008; 451: 990-993. (Pubitemid 351301726)
3. Taylor LH, Latham SM, Woolhouse ME Risk factors for human disease emergence. Philos Trans R Soc Lond B Biol Sci 2001; 356: 983-989. (Pubitemid 32696243)
4. Woolhouse MEJ, Gowtage-Sequeria S. Host range and emerging and reemerging pathogens. Emerg Infect Dis 2005; 11: 1842-1847. (Pubitemid 43356078)
5. Cleaveland S, Laurenson MK, Taylor LH Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. Philos Trans R Soc Lond B Biol Sci 2001; 356: 991-999. (Pubitemid 32696244)
6. Harvell CD, Kim K, Burkholder JM et al. Emerging marine diseases-climate links and anthropogenic factors. Science 1999; 285: 1505-1510. (Pubitemid 29420569)
7. Daszak P, Cunningham AA, Hyatt AD Emerging infectious diseases of wildlife-threats to biodiversity and human health. Science 2000; 287: 443-449.
8. Woolhouse M, Gaunt E. Ecological origins of novel human pathogens. Crit Rev Microbiol 2007; 33: 231-242. (Pubitemid 350146703)
9. Lloyd-Smith J.O., George D, Pepin KM et al. Epidemic dynamics at the human-animal interface. Science 2009; 326: 1362-1367.
10. Wolfe ND, Dunavan CP, Diamond J. Origins of major human infectious diseases. Nature 2007; 447: 279-283. (Pubitemid 46788835)
11. Lederberg J, Shope RE, Oaks SC Emerging infections: microbial threats to health in the United States. Washington, DC: National Academy Press, 1992.
12. Smolinski MS, Hamburg MA, Lederberg J. Microbial threats to health: emergence, detection, and response. Washington, DC: National Academies Press, 2003.
13. Morse SS. Factors in the emergence of infectious diseases. Emerg Infect Dis 1995; 1: 7-15.
14. Daszak P, Cunningham AA, Hyatt AD Anthropogenic environmental change and the emergence of infectious diseases in wildlife. Acta Trop 2001; 78: 103-116. (Pubitemid 32179644)
15. Dobson A. Population dynamics of pathogens with multiple host species. Am Nat 2004; 164: S64-S78. (Pubitemid 39509006)
16. Peeler EJ, Feist SW Human intervention in freshwater ecosystems drives disease emergence. Freshw Biol 2011; 56: 705-716.
17. Perry BD, Grace D, Sones K. Current drivers and future directions of global livestock disease dynamics. Proc Natl Acad Sci USA 2011; 108: 1-8.
18. Weiss RA, McMichael AJ Social and environmental risk factors in the emergence of infectious diseases. Nat Med 2004; 10: S70-S76. (Pubitemid 40018229)
19. Keusch G, Pappaioanou M, Gonzales M.C., Scott KA, Tsai P. Sustaining global surveillance and response to emerging zoonotic diseases. Washington, DC: National Academies Press, 2009.
20. Barrett LG, Thrall PH, Burdon J.J., Linde CC Life history determines genetic structure and evolutionary potential of host-parasite interactions. Trends Ecol Evol 2008; 23: 678-685.
21. Plowright RK, Sokolow SH, Gorman M.E., Daszak P., Foley JE Causal inference in disease ecology: investigating ecological drivers of disease emergence. Front Ecol Environ 2008; 6: 420-429.
22. Schrag SJ, Wiener P. Emerging infectious disease: what are the relative roles of ecology and evolution? Trends Ecol Evol 1995; 10: 319-324.
23. Conraths FJ, Schwabenbauer K, Vallat B et al. Animal health in the 21st century-a global challenge. Prev Vet Med 2011; 102: 93-97.
24. Burke DS. Evolvability of emerging viruses. In: Nelson AM, Horsburgh CR (eds.) Pathology of emerging infections 2. Washington, DC: American Society for Microbiology, 1998: 1-12.
25. Alexander HK, Day T. Risk factors for the evolutionary emergence of pathogens. J R Soc Interface 2010; 7: 1455-1474.
26. Cleaveland S, Haydon DT, Taylor L. Overviews of pathogen emergence: which pathogens emerge, when and why? Curr Top Microbiol Immunol 2007; 315: 85-111.
27. Slingenbergh JI, Gilbert M, de Balogh KI, Wint W. Ecological sources of zoonotic diseases. Rev Sci Tech 2004; 23: 467-484. (Pubitemid 40180979)
28. Woolhouse MEJ, Haydon DT, Antia R. Emerging pathogens: the epidemiology and evolution of species jumps. Trends Ecol Evol 2005; 20: 238-244. (Pubitemid 40588908)
29. Diekmann O, Heesterbeek JA Mathematical epidemiology of infectious diseases: model building, analysis, and interpretation. Chichester: John Wiley & Sons Ltd 2000.
30. Antia R, Regoes RR, Koella J.C., Bergstrom CT The role of evolution in the emergence of infectious diseases. Nature 2003; 426: 658-661. (Pubitemid 38009372)
31. Agosta SJ, Janz N, Brooks DR How specialists can be generalists: resolving the 'parasite paradox' and implications for emerging infectious disease. Zoologia (Curitiba) 2010; 27: 151-162.
32. Pulliam JR. Viral host jumps: moving toward a predictive framework. Ecohealth 2008; 5: 80-91.
33. Holmes EC, Drummond AJ The evolutionary genetics of viral emergence. Curr Top Microbiol Immunol 2007; 315: 51-66.
34. Pepin KM, Lass S, Pulliam J.R., Read AF, Lloyd-Smith JO. Identifying genetic markers of adaptation for surveillance of viral host jumps. Nat Rev Microbiol 2010; 8: 802-813.
35. dos Reis M., Tamuri AU, Hay A.J., Goldstein RA Charting the host adaptation of influenza viruses. Mol Biol Evol 2011; 28: 1755-1767.
36. Pulliam JR, Dushoff JG, Levin S.A., Dobson AP Epidemic enhancement in partially immune populations. PLoS ONE 2007; 2: e165.
37. Pulliam JRC, Epstein JH, Dushoff J et al. Agricultural intensification, priming for persistence and the emergence of Nipah virus: a lethal bat-borne zoonosis. J R Soc Interface 2012; 9: 89-101.
38. Pulliam JRC, Dushoff J. Ability to replicate in the cytoplasm predicts zoonotic transmission of livestock viruses. J Infect Dis 2009; 199: 565-568.
39. Woolhouse ME, Taylor LH, Haydon DT Population biology of multihost pathogens. Science 2001; 292: 1109-1112. (Pubitemid 32440923)
40. Webster RG, Bean WJ, Gorman O.T., Chambers TM, Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol Rev 1992; 56: 152-179.
41. Smith GJ, Vijaykrishna D, Bahl J et al. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 2009; 459: 1122-1125.
42. Crawford PC, Dubovi EJ, Castleman WL et al. Transmission of equine influenza virus to dogs. Science 2005; 310: 482-485. (Pubitemid 41507960)
43. Song DS, An DJ, Moon HJ et al. Interspecies transmission of the canine influenza H3N2 virus to domestic cats in South Korea, 2010. J Gen Virol 2011; 92: 2350-2355.
44. Herfst S, Schrauwen EJ, Linster M et al. Airborne transmission of influenza A/H5N1 virus between ferrets. Science 2012; 336: 1534-1541.
45. Wolfe ND, Daszak P, Kilpatrick A.M., Burke DS Bushmeat hunting, deforestation, and prediction of zoonotic emergence. Emerg Infect Dis 2005; 11: 1822-1827. (Pubitemid 43356076)
46. Altizer S, Bartel R, Han BA Animal migration and infectious disease risk. Science 2011; 331: 296-302.
47. Chua KB, Chua BH, Wang CW Anthropogenic deforestation, El Nino and the emergence of Nipah virus in Malaysia. Malays J Pathol 2002; 24: 15-21.
48. Shortridge KF, Zhou NN, Guan Y et al. Characterization of avian H5N1 influenza viruses from poultry in Hong Kong. Virology 1998; 252: 331-342. (Pubitemid 29013415)
49. Martin V, Sims L, Lubroth J., Pfeiffer D, Slingenbergh J, Domenech J. Epidemiology and ecology of highly pathogenic avian influenza with particular emphasis on South East Asia. Dev Biol (Basel) 2006; 124: 23-36. (Pubitemid 43258896)
50. Rohde H, Qin J, Cui Y et al. Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 2011; 365: 718-724.
51. Anderson RM, May RM Coevolution of hosts and parasites. Parasitology 1982; 85: 411-426. (Pubitemid 13251084)
52. Ewald PW. Host-parasite relations, vectors, and the evolution of disease severity. Annu Rev Ecol Syst 1983; 14: 465-485.
53. Day T. Virulence evolution and the timing of disease life-history events. Trends Ecol Evol 2003; 18: 113-118. (Pubitemid 36391417)
54. Alizon S, Hurford A, Mideo N., van Baalen M. Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future. J Evol Biol 2009; 22: 245-259.
55. Vignuzzi M, Stone JK, Arnold J.J., Cameron CE, Andino R. Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population. Nature 2005; 439: 344-348. (Pubitemid 43128860)
56. Weinstock DM, Zuccotti G. The evolution of influenza resistance and treatment. JAMA 2009; 301: 1066-1069.
57. An TQ, Tian ZJ, Leng C.L., Peng JM, Tong GZ Highly pathogenic porcine reproductive and respiratory syndrome virus, Asia. Emerg Infect Dis 2011; 17: 1782-1784.
58. Zhou X, Liu Y, Calvert L et al. Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. J Gen Virol 1997; 78: 2101-2111. (Pubitemid 27367701)
59. Greger M. The human/animal interface: emergence and resurgence of zoonotic infectious diseases. Crit Rev Microbiol 2007; 33: 243-299. (Pubitemid 350146705)
60. Gootz TD. The global problem of antibiotic resistance. Crit Rev Immunol 2010; 30: 79-93.
61. Lim JY, Yoon J, Hovde CJ A brief overview of Escherichia coli O157:H7 and its plasmid O157. J Microbiol Biotechnol 2010; 20: 5-14.
62. Nordmann P, Naas T, Poirel L. Global spread of carbapenemase-producing Enterobacteriaceae. Emerg Infect Dis 2011; 17: 1791-1798.
63. D'Costa V.M., King CE, Kalan L et al. Antibiotic resistance is ancient. Nature 2011; 477: 457-461.
64. Friesen TL, Stukenbrock EH, Liu Z et al. Emergence of a new disease as a result of interspecific virulence gene transfer. Nat Genet 2006; 38: 953-956. (Pubitemid 44141666)
65. Phyo AP, Nkhoma S, Stepniewska K et al. Emergence of artemisinin- resistant malaria on the western border of Thailand: a longitudinal study. Lancet 2012; 379: 1960-1966.
66. Pulkkinen K, Suomalainen LR, Read A.F., Ebert D., Rintamäki P, Valtonen ET Intensive fish farming and the evolution of pathogen virulence: the case of columnaris disease in Finland. Proc Biol Sci 2010; 277: 593-600.
67. Ewald PW. Evolution of virulence. Infect Dis Clin North Am 2004; 18: 1-15. (Pubitemid 38479479)
68. Ewald PW. Guarding against the most dangerous emerging pathogens. Emerg Infect Dis 1996; 2: 245-257.
69. Duffy G, Lynch OA, Cagney C. Tracking emerging zoonotic pathogens from farm to fork. Meat Sci 2008; 78: 34-42. (Pubitemid 350138571)
70. Horm SV, Gutiérrez RA, Sorn S., Buchy P. Environment: a potential source of animal and human infection with influenza A (H5N1) virus. Influenza Other Respi Viruses 2012; 6: 442-448.
71. Domanska-Blicharz K., Minta Z, Smietanka K., Marché S, van Den Berg T. H5N1 high pathogenicity avian influenza virus survival in different types of water. Avian Dis 2010; 54: 734-737.
72. Saif YM. Infectious bursal disease and hemorrhagic enteritis. Poult Sci 1998; 77: 1186-1189. (Pubitemid 128527284)
73. Mennerat A, Nilsen F, Ebert D., Skorping A. Intensive farming: evolutionary implications for parasites and pathogens. Evol Biol 2010; 37: 59-67.
74. Gilbert M, Xiao X, Domenech J., Lubroth J, Martin V, Slingenbergh J. Anatidae migration in the western Palearctic and spread of highly pathogenic avian influenza H5NI virus. Emerg Infect Dis 2006; 12: 1650-1656. (Pubitemid 44674239)
75. Gilbert M, Xiao X, Pfeiffer DU et al. Mapping H5N1 highly pathogenic avian influenza risk in Southeast Asia. Proc Natl Acad Sci USA 2008; 105: 4769-4774. (Pubitemid 351753821)
76. van Loo I., Huijsdens X, Tiemersma E et al. Emergence of methicillin-resistant Staphylococcus aureus of animal origin in humans. Emerg Infect Dis 2007; 13: 1834-1839. (Pubitemid 350248483)
77. Strange RN, Scott PR Plant disease: a threat to global food security. Annu Rev Phytopathol 2005; 43: 83-116. (Pubitemid 41318866)
78. Wheeler RW, Davies RL, Dalsgaard I et al. Yersinia ruckeri biotype 2 isolates from mainland Europe and the UK likely represent different clonal groups. Dis Aquat Organ 2009; 84: 25-33.
79. Nylund A, Devold M, Plarre H., Isdal E, Aarseth M. Emergence and maintenance of infectious salmon anaemia virus (ISAV) in Europe: a new hypothesis. Dis Aquat Organ 2003; 56: 11-24. (Pubitemid 37134912)
80. Gandon S, Mackinnon MJ, Nee S, Read AF Imperfect vaccines and the evolution of pathogen virulence. Nature 2001; 414: 751-756. (Pubitemid 34000772)
81. Williams PD. Darwinian interventions: taming pathogens through evolutionary ecology. Trends Parasitol 2010; 26: 83-92.
82. Malim MH, Emerman M. HIV-1 sequence variation: drift, shift, and attenuation. Cell 2001; 104: 469-472. (Pubitemid 32201943)
83. van Boven M., Mooi FR, Schellekens J.F., de Melker HE, Kretzschmar M. Pathogen adaptation under imperfect vaccination: implications for pertussis. Proc Biol Sci 2005; 272: 1617-1624. (Pubitemid 41414696)
84. Mackinnon MJ, Gandon S, Read AF Virulence evolution in response to vaccination: the case of malaria. Vaccine 2008; 26: C42-C52. (Pubitemid 351899087)
85. Brueggemann AB, Pai R, Crook D.W., Beall B. Vaccine escape recombinants emerge after pneumococcal vaccination in the United States. PLoS Pathog 2007; 3: e168.
86. Anonymous. Multistate fungal meningitis outbreak investigation. Atlanta, GA: Centers for Disease Control and Prevention, 2012. Available at http://www.cdc.gov/hai/outbreaks/meningitis.html (accessed 29 November 2012).
87. Kotton CN. Zoonoses in solid-organ and hematopoietic stem cell transplant recipients. Clin Infect Dis 2007; 44: 857-866. (Pubitemid 46365315)
88. Murray KO, Mertens E, Desprès P. West Nile virus and its emergence in the United States of America. Vet Res 2010; 41: 67
89. Rowlands RJ, Michaud V, Heath L et al. African swine fever virus isolate, Georgia, 2007. Emerg Infect Dis 2008; 14: 1870-1874.
90. Rezza G, Nicoletti L, Angelini R et al. Infection with chikungunya virus in Italy: an outbreak in a temperate region. Lancet 2007; 370: 1840-1846. (Pubitemid 350180033)
91. ProMED-mail. Bluetongue-Netherlands, Belgium, Germany (06): BTV-8. ProMED-mail: 28 Aug 2006 (20060828.2448). Available at http://www.promedmail.org (accessed 29 November 2012).
92. Brooks DR, Hoberg EP How will global climate change affect parasite-host assemblages? Trends Parasitol 2007; 23: 571-574. (Pubitemid 350161427)
93. Blackburn TM, Pyšek P, Bacher S et al. A proposed unified framework for biological invasions. Trends Ecol Evol 2011; 26: 333-339.
94. Wilson JR, Dormontt EE, Prentis P.J., Lowe AJ, Richardson DM Something in the way you move: dispersal pathways affect invasion success. Trends Ecol Evol 2009; 24: 136-144.
95. Hengeveld R. Dynamics of biological invasions. London: Chapman & Hall Ltd, 1989.
96. Randolph SE, Rogers DJ The arrival, establishment and spread of exotic diseases: patterns and predictions. Nat Rev Microbiol 2010; 8: 361-371.
97. Pfeffer M, Dobler G. Emergence of zoonotic arboviruses by animal trade and migration. Parasit Vectors 2010; 3: 35.
98. de La Rocque S, Rioux JA, Slingenbergh J. Climate change: effects on animal disease systems and implications for surveillance and control. Rev Sci Tech 2008; 27: 339-354.
99. Kurtenbach K, Hanincová K, Tsao JI, Margos G, Fish D, Ogden NH. Fundamental processes in the evolutionary ecology of Lyme borreliosis. Nat Rev Microbiol 2006; 4: 660-669.
100. de La Rocque S, Balenghien T, Halos L et al. A review of trends in the distribution of vector-borne diseases: is international trade contributing to their spread? Rev Sci Tech 2011; 30: 119-130.
101. Miller BR, Godsey MS, Crabtree MB et al. Isolation and genetic characterization of Rift Valley fever virus from Aedes vexans arabiensis, Kingdom of Saudi Arabia. Emerg Infect Dis 2002; 8: 1492-1494. (Pubitemid 36008790)
102. Woolhouse M. How to make predictions about future disease risks. Philos Trans R Soc Lond B Biol Sci 2011; 366: 2045-2054.
103. Burgos S, Slingenbergh J. Thoughts on human-animal-ecosystems interface. Transbound Emerg Dis 2011; 58: 372-373.