-
1
-
-
0023684340
-
Coriobacterium glomerans gen. nov., sp. nov. from the intestinal tract of the Red Soldier Bug
-
Haas F, König H. Coriobacterium glomerans gen. nov., sp. nov. from the intestinal tract of the Red Soldier Bug. Int J Syst Bact 1988; 38:382-384. http://dx.doi.org/10.1099/00207713-38-4-382
-
(1988)
Int J Syst Bact
, vol.38
, pp. 382-384
-
-
Haas, F.1
König, H.2
-
2
-
-
0027993842
-
Coriobacterium and Atopobium are phylogenetic neighbors within the actinomycetes line of de-scent
-
Rainey FA, Weiss N, Stackebrandt E. Coriobacterium and Atopobium are phylogenetic neighbors within the actinomycetes line of de-scent. Syst Appl Microbiol 1994; 17:202-205. http://dx.doi.org/10.1016/S0723-2020(11)80008-1
-
(1994)
Syst Appl Microbiol
, vol.17
, pp. 202-205
-
-
Rainey, F.A.1
Weiss, N.2
Stackebrandt, E.3
-
3
-
-
0026656494
-
Comparative sequence analysis of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus.Proposal for the creation of a new genus
-
Collins MD, Wallbanks S. Comparative sequence analysis of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus. Proposal for the creation of a new genus Atopobium. FEMS Microbiol Lett 1992; 95:235-240. http://dx.doi.org/10.1111/j.1574-6968.1992.tb05372.x
-
(1992)
Atopobium. FEMS Microbiol Lett
, vol.95
, pp. 235-240
-
-
Collins, M.D.1
Wallbanks, S.2
-
4
-
-
0030893495
-
Proposal for a new hierarchic classification sys-tem, Actinobacteria classis nov
-
Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification sys-tem, Actinobacteria classis nov. Int J Syst Bacteriol 1997; 47:479-491. http://dx.doi.org/10.1099/00207713-47-2-479
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 479-491
-
-
Stackebrandt, E.1
Rainey, F.A.2
Ward-Rainey, N.L.3
-
5
-
-
79954466817
-
Release LTPs104 of the All-Species Living Tree
-
PubMed
-
Munoz R, Yarza P, Ludwig W, Euzéby J, Amann R, Schleifer KH, Glöckner FO, Rosselló-Móra R. Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol 2011; 34:169-170. PubMed http://dx.doi.org/10.1016/j.syapm.2011.03.001
-
(2011)
Syst Appl Microbiol
, vol.34
, pp. 169-170
-
-
Munoz, R.1
Yarza, P.2
Ludwig, W.3
Euzéby, J.4
Amann, R.5
Schleifer, K.H.6
Glöckner, F.O.7
Rosselló-Móra, R.8
-
6
-
-
84878340606
-
Phylum XXVI Actinobacteria phyl. nov
-
In Goodfellow M, Kämpfer P, Busse HJ, Tru-jillo ME, Suzuki K, Ludwig W, Whitman WB (eds), 2nd ed
-
Goodfellow M. Phylum XXVI Actinobacteria phyl. nov. In Goodfellow M, Kämpfer P, Busse HJ, Tru-jillo ME, Suzuki K, Ludwig W, Whitman WB (eds) Bergey's Manual of Systematic Bacteriology 2nd ed. 2012a; p.33-34.
-
(2012)
Bergey's Manual of Systematic Bacteriology
, pp. 33-34
-
-
Goodfellow, M.1
-
7
-
-
84878245701
-
Class III. Coriobacteriia class. nov
-
Goodfellow M, Kämpfer P, Busse HJ, Trujillo ME, Suzuki K, Ludwig W, Whitman WB (eds), 2nd ed
-
König H. Class III. Coriobacteriia class. nov. In: Goodfellow M, Kämpfer P, Busse HJ, Trujillo ME, Suzuki K, Ludwig W, Whitman WB (eds) Bergey's Manual of Systematic Bacteriology 2nd ed. 2012a; p 1975.
-
(2012)
Bergey's Manual of Systematic Bacteriology
, pp. 1975
-
-
König, H.1
-
8
-
-
84891558906
-
Taxonomic outline if the bacteria and Archaea, Release 7.7 March 6, 2007
-
Garrity GM, Lilburn TG, Cole JR, Harrison SH, Euzeby J, Tindall BJ. Taxonomic outline if the bacteria and Archaea, Release 7.7 March 6, 2007. Part 10-The bacteria: Phylum 'Actinobacteria': Class Actinobacteria
-
Part 10-The Bacteria: Phylum 'Actinobacteria': Class Actinobacteria
-
-
Garrity, G.M.1
Lilburn, T.G.2
Cole, J.R.3
Harrison, S.H.4
Euzeby, J.5
Tindall, B.J.6
-
9
-
-
0032899737
-
Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov
-
PubMed
-
Kageyama A, Benno Y, Nakase T. Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov. Int J Syst Bacteriol 1999; 49:557-565. PubMed http://dx.doi.org/10.1099/00207713-49-2-557
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 557-565
-
-
Kageyama, A.1
Benno, Y.2
Nakase, T.3
-
10
-
-
68249098737
-
Local-ization and transmission route of Coriobacterium glomerans, the endosymbiont of pyrrhocorid bugs
-
PubMed
-
Kaltenpoth M, Winter SA, Kleinhammer A. Local-ization and transmission route of Coriobacterium glomerans, the endosymbiont of pyrrhocorid bugs. FEMS Microbiol Ecol 2009; 69:373-383. PubMed http://dx.doi.org/10.1111/j.1574-6941.2009.00722.x
-
(2009)
FEMS Microbiol Ecol
, vol.69
, pp. 373-383
-
-
Kaltenpoth, M.1
Winter, S.A.2
Kleinhammer, A.3
-
11
-
-
84878315642
-
Genus I. Coriobacterium
-
Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K, Ludwig W, Whitman WB (eds), 2nd ed
-
König H. Genus I. Coriobacterium. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K, Ludwig W, Whitman WB (eds) Bergey's Manual of Systematic Bacteriology 2nd ed. 2012b; pp. 1977-1978.
-
(2012)
Bergey's Manual of Systematic Bacteriology
, pp. 1977-1978
-
-
König, H.1
-
12
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403-410. PubMed
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
14
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compat-ible with ARB
-
PubMed
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. Greengenes, a chimera-checked 16S rRNA gene database and workbench compat-ible with ARB. Appl Environ Microbiol 2006; 72:5069-5072. PubMed http://dx.doi.org/10.1128/AEM.03006-05
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
16
-
-
0036203448
-
Multiple sequence alignment using partial order graphs
-
PubMed
-
Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinformat-ics 2002; 18:452-464. PubMed http://dx.doi.org/10.1093/bioinformatics/18.3.452
-
(2002)
Bioinformat-ics
, vol.18
, pp. 452-464
-
-
Lee, C.1
Grasso, C.2
Sharlow, M.F.3
-
17
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Pub-Med
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17:540-552. Pub-Med http://dx.doi.org/10.1093/oxfordjournals.molbev.a026334
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
18
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web-servers
-
PubMed
-
Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML web-servers. Syst Biol 2008; 57:758-771. PubMed http://dx.doi.org/10.1080/10635150802429642
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
19
-
-
36849014457
-
An empirical test of the midpoint rooting method
-
Hess PN, De Moraes Russo CA. An empirical test of the midpoint rooting method. Biol J Linn Soc Lond 2007; 92:669-674. http://dx.doi.org/10.1111/j.1095-8312.2007.00864.x
-
(2007)
Biol J Linn Soc Lond
, vol.92
, pp. 669-674
-
-
Hess, P.N.1
De Moraes Russo, C.A.2
-
20
-
-
67650340717
-
How many bootstrap replicates are necessary?
-
Pattengale ND, Alipour M, Bininda-Emonds ORP, Moret BME, Stamatakis A. How many bootstrap replicates are necessary? Lect Notes Comput Sci 2009; 5541:184-200. http://dx.doi.org/10.1007/978-3-642-02008-7_13
-
(2009)
Lect Notes Comput Sci
, vol.5541
, pp. 184-200
-
-
Pattengale, N.D.1
Alipour, M.2
Bininda-Emonds, O.R.P.3
Moret, B.M.E.4
Stamatakis, A.5
-
21
-
-
84878279478
-
-
PAUP*: Phylogenetic Analysis Us-ing Parsimony (*and Other Methods), Version 4.0 b10. Sinauer Associates, Sunderland
-
Swofford DL. PAUP*: Phylogenetic Analysis Us-ing Parsimony (*and Other Methods), Version 4.0 b10. Sinauer Associates, Sunderland, 2002.
-
(2002)
-
-
Swofford, D.L.1
-
22
-
-
84859165788
-
The Genomes OnLine Database (GOLD) v.4: Status of genomic and metagenomic projects and their as-sociated metadata
-
PubMed
-
Pagani I, Liolios K, Jansson J, Chen IM, Smirnova T, Nosrat B, Markowitz VM, Kyrpides NC. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their as-sociated metadata. Nucleic Acids Res 2012; 40:D571-D579. PubMed http://dx.doi.org/10.1093/nar/gkr1100
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pagani, I.1
Liolios, K.2
Jansson, J.3
Chen, I.M.4
Smirnova, T.5
Nosrat, B.6
Markowitz, V.M.7
Kyrpides, N.C.8
-
23
-
-
80053366425
-
Complete genome sequence of Eggerthella lenta type strain (VPI 0255T)
-
PubMed
-
Saunders E, Pukall R, Abt B, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, et al. Complete genome sequence of Eggerthella lenta type strain (VPI 0255T). Stand Genomic Sci 2009; 1:174-182. PubMed http://dx.doi.org/10.4056/sigs.33592
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 174-182
-
-
Saunders, E.1
Pukall, R.2
Abt, B.3
Lapidus, A.4
Glavina Del Rio, T.5
Copeland, A.6
Tice, H.7
Cheng, J.F.8
Lucas, S.9
Chen, F.10
-
24
-
-
80053454751
-
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T)
-
PubMed
-
Pukall R, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, et al. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T). Stand Genomic Sci 2009; 1:234-241. PubMed http://dx.doi.org/10.4056/sigs.37633
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 234-241
-
-
Pukall, R.1
Lapidus, A.2
Nolan, M.3
Copeland, A.4
Glavina Del Rio, T.5
Lucas, S.6
Chen, F.7
Tice, H.8
Cheng, J.F.9
Chertkov, O.10
-
25
-
-
78349267780
-
Complete genome sequence of Cryptobacterium curtum type strain (12-3T)
-
PubMed
-
Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, et al. Complete genome sequence of Cryptobacterium curtum type strain (12-3T). Stand Genomic Sci 2009; 1:93-100. PubMed http://dx.doi.org/10.4056/sigs.12260
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 93-100
-
-
Mavrommatis, K.1
Pukall, R.2
Rohde, C.3
Chen, F.4
Sims, D.5
Brettin, T.6
Kuske, C.7
Detter, J.C.8
Han, C.9
Lapidus, A.10
-
26
-
-
80053340887
-
Complete genome se-quence of Atopobium parvulum type strain (IPP 1246T)
-
PubMed
-
Copeland A, Sikorski J, Lapidus A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, et al. Complete genome se-quence of Atopobium parvulum type strain (IPP 1246T). Stand Genomic Sci 2009; 1:166-173. PubMed http://dx.doi.org/10.4056/sigs.29547
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 166-173
-
-
Copeland, A.1
Sikorski, J.2
Lapidus, A.3
Nolan, M.4
Glavina Del Rio, T.5
Lucas, S.6
Chen, F.7
Tice, H.8
Pitluck, S.9
Cheng, J.F.10
-
27
-
-
79957552447
-
Complete genome sequence of Olsenella uli type strain (AVPI D76D-27CT)
-
PubMed
-
Göker M, Held B, Lucas S, Nolan M, Yasawong M, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter JC, et al. Complete genome sequence of Olsenella uli type strain (AVPI D76D-27CT). Stand Genomic Sci 2010; 3:76-84. PubMed http://dx.doi.org/10.4056/sigs.1082860
-
(2010)
Stand Genomic Sci
, vol.3
, pp. 76-84
-
-
Göker, M.1
Held, B.2
Lucas, S.3
Nolan, M.4
Yasawong, M.5
Glavina Del Rio, T.6
Tice, H.7
Cheng, J.F.8
Bruce, D.9
Detter, J.C.10
-
28
-
-
43449108562
-
The minimum information about a genome sequence (MIGS) specification
-
PubMed
-
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008; 26:541-547. PubMed http://dx.doi.org/10.1038/nbt1360
-
(2008)
Nat Biotechnol
, vol.26
, pp. 541-547
-
-
Field, D.1
Garrity, G.2
Gray, T.3
Morrison, N.4
Selengut, J.5
Sterk, P.6
Tatusova, T.7
Thomson, N.8
Allen, M.J.9
Angiuoli, S.V.10
-
29
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the do-mains Archaea, Bacteria, and
-
PubMed
-
Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the do-mains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed http://dx.doi.org/10.1073/pnas.87.12.4576
-
(1990)
Eucarya. Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
30
-
-
0000685441
-
The Road Map to the Man-ual
-
In: Garrity GM, Boone DR, Castenholz RW, Second Edition, Springer, New York
-
Garrity GM, Holt JG. The Road Map to the Man-ual. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriolo-gy, Second Edition, Volume 1, Springer, New York, 2001, p. 119-169.
-
(2001)
Bergey's Manual of Systematic Bacteriolo-gy
, vol.1
, pp. 119-169
-
-
Garrity, G.M.1
Holt, J.G.2
-
31
-
-
67651165968
-
An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa
-
PubMed
-
Zhi XY, Li WJ, Stackebrandt E. An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 2009; 59:589-608. PubMed http://dx.doi.org/10.1099/ijs.0.65780-0
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 589-608
-
-
Zhi, X.Y.1
Li, W.J.2
Stackebrandt, E.3
-
32
-
-
0000685441
-
Taxonomic Outline of the Archaea and Bacteria
-
Garrity GM, Boone DR, Castenholz RW, Springer, New York
-
Garrity GM, Holt JG. Taxonomic Outline of the Archaea and Bacteria. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of System-atic Bacteriology, Second Edition, Volume 1, Springer, New York, 2001, p. 155-166.
-
(2001)
Bergey's Manual of System-atic Bacteriology, Second Edition
, vol.1
, pp. 155-166
-
-
Garrity, G.M.1
Holt, J.G.2
-
33
-
-
84878269778
-
-
BAuA, Classification of bacteria and archaea in risk groups, TRBA 466
-
BAuA. 2010, Classification of bacteria and archaea in risk groups. http://www.baua.de TRBA 466, p. 63.
-
(2010)
, pp. 63
-
-
-
34
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
PubMed
-
Ashburner M, Ball CA, Blake JA, Botstein D, But-ler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: tool for the unification of biology. Nat Genet 2000; 25:25-29. PubMed http://dx.doi.org/10.1038/75556
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
But-Ler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
35
-
-
33749546195
-
Characterization of an anaero-bic symbiont and the associated aerobic bacterial flora of Pyrrhocoris upterus (Heteroptera: Pyrrhocoridae)
-
Haas F, König H. Characterization of an anaero-bic symbiont and the associated aerobic bacterial flora of Pyrrhocoris upterus (Heteroptera: Pyrrhocoridae). FEMS Microbiol Ecol 1987; 45:99-106.
-
(1987)
FEMS Microbiol Ecol
, vol.45
, pp. 99-106
-
-
Haas, F.1
König, H.2
-
36
-
-
0015462556
-
Peptidoglycan types of bacterial cell walls and their taxonomic implica-tions
-
PubMed
-
Schleifer KH, Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implica-tions. Bacteriol Rev 1972; 36:407-477. PubMed
-
(1972)
Bacteriol Rev
, vol.36
, pp. 407-477
-
-
Schleifer, K.H.1
Kandler, O.2
-
37
-
-
83155182859
-
Peptidoglycan Structure. In Taxon-omy of Prokaryotes
-
Rainey F, Oren A (eds), London: Aca-demic Press
-
Schumann P. Peptidoglycan Structure. In Taxon-omy of Prokaryotes. In: Rainey F, Oren A (eds) Methods in Microbiology, vol. 38, London: Aca-demic Press. 2011; pp. 101-129.
-
(2011)
Methods In Microbiology
, vol.38
, pp. 101-129
-
-
Schumann, P.1
-
38
-
-
77952889628
-
En route to a genome-based classification of Archaea and
-
PubMed
-
Klenk HP, Göker M. En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol 2010; 33:175-182. PubMed http://dx.doi.org/10.1016/j.syapm.2010.03.003
-
(2010)
Bacteria? Syst Appl Microbiol
, vol.33
, pp. 175-182
-
-
Klenk, H.P.1
Göker, M.2
-
39
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and
-
PubMed
-
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 2009; 462:1056-1060. PubMed http://dx.doi.org/10.1038/nature08656
-
(2009)
Archaea. Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.N.6
Kunin, V.7
Goodwin, L.8
Wu, M.9
Tindall, B.J.10
-
40
-
-
84871205244
-
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and an-notation
-
PubMed
-
Mavromatis K, Land ML, Brettin TS, Quest DJ, Copeland A, Clum A, Goodwin L, Woyke T, Lapidus A, Klenk HP, et al. The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and an-notation. PLoS ONE 2012; 7:e48837. PubMed http://dx.doi.org/10.1371/journal.pone.0048837
-
(2012)
PLoS ONE
, vol.7
-
-
Mavromatis, K.1
Land, M.L.2
Brettin, T.S.3
Quest, D.J.4
Copeland, A.5
Clum, A.6
Goodwin, L.7
Woyke, T.8
Lapidus, A.9
Klenk, H.P.10
-
41
-
-
79953824958
-
The DNA Bank Network: The start from a German initiative
-
Gemeinholzer B, Dröge G, Zetzsche H, Haszprunar G, Klenk HP, Güntsch A, Berendsohn WG, Wägele JW. The DNA Bank Network: the start from a German initiative. Biopreserv Biobank 2011; 9:51-55. http://dx.doi.org/10.1089/bio.2010.0029
-
(2011)
Biopreserv Biobank
, vol.9
, pp. 51-55
-
-
Gemeinholzer, B.1
Dröge, G.2
Zetzsche, H.3
Haszprunar, G.4
Klenk, H.P.5
Güntsch, A.6
Berendsohn, W.G.7
Wägele, J.W.8
-
42
-
-
84878299225
-
-
JGI website
-
JGI website. http://www.jgi.doe.gov/
-
-
-
-
43
-
-
84878287381
-
-
The Phred/Phrap/Consed software package
-
The Phred/Phrap/Consed software package. http://www.phrap.com
-
-
-
-
44
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
PubMed
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008; 18:821-829. PubMed http://dx.doi.org/10.1101/gr.074492.107
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
45
-
-
33751109989
-
Finishing repeat regions auto-matically with Dupfinisher
-
Arabnia HR, Valafar H (eds), CSREA Press. June 26-29,
-
Han C, Chain P. Finishing repeat regions auto-matically with Dupfinisher. In: Proceeding of the 2006 international conference on bioinformatics & computational biology. Arabnia HR, Valafar H (eds), CSREA Press. June 26-29, 2006: 141-146.
-
(2006)
Proceeding of the 2006 International Conference On Bioinformatics & Computational Biology
, pp. 141-146
-
-
Han, C.1
Chain, P.2
-
46
-
-
80053362233
-
POLISHER: An effective tool for us-ing ultra short reads in microbial genome assem-bly and finishing
-
Marco Island, FL
-
Lapidus A, LaButti K, Foster B, Lowry S, Trong S, Goltsman E. POLISHER: An effective tool for us-ing ultra short reads in microbial genome assem-bly and finishing. AGBT, Marco Island, FL, 2008.
-
(2008)
AGBT
-
-
Lapidus, A.1
Labutti, K.2
Foster, B.3
Lowry, S.4
Trong, S.5
Goltsman, E.6
-
47
-
-
77952299957
-
Prodigal: Prokaryotic gene recognition and translation initiation site identifi-cation
-
Pub-Med
-
Hyatt D, Chen GL, LoCascio PF, Land ML, Lar-imer FW, Hauser LJ. Prodigal: prokaryotic gene recognition and translation initiation site identifi-cation. BMC Bioinformatics 2010; 11:119. Pub-Med http://dx.doi.org/10.1186/1471-2105-11-119
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Lar-Imer, F.W.5
Hauser, L.J.6
-
48
-
-
75849124594
-
The DOE-JGI Standard operating procedure for the annotations of microbial genomes
-
PubMed
-
Mavromatis K, Ivanova NN, Chen IM, Szeto E, Markowitz VM, Kyrpides NC. The DOE-JGI Standard operating procedure for the annotations of microbial genomes. Stand Genomic Sci 2009; 1:63-67. PubMed http://dx.doi.org/10.4056/sigs.632
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 63-67
-
-
Mavromatis, K.1
Ivanova, N.N.2
Chen, I.M.3
Szeto, E.4
Markowitz, V.M.5
Kyrpides, N.C.6
-
49
-
-
77953023066
-
GenePRIMP: A gene prediction improvement pipeline for prokaryotic genomes
-
PubMed
-
Pati A, Ivanova NN, Mikhailova N, Ovchinnikova G, Hooper SD, Lykidis A, Kyrpides NC. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat Methods 2010; 7:455-457. PubMed http://dx.doi.org/10.1038/nmeth.1457
-
(2010)
Nat Methods
, vol.7
, pp. 455-457
-
-
Pati, A.1
Ivanova, N.N.2
Mikhailova, N.3
Ovchinnikova, G.4
Hooper, S.D.5
Lykidis, A.6
Kyrpides, N.C.7
-
50
-
-
69949116874
-
IMG ER: A system for microbial genome annotation expert review and curation
-
PubMed
-
Markowitz VM, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. IMG ER: a system for microbial genome annotation expert review and curation. Bio-informatics 2009; 25:2271-2278. PubMed http://dx.doi.org/10.1093/bioinformatics/btp393
-
(2009)
Bio-informatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
Ivanova, N.N.2
Chen, I.M.A.3
Chu, K.4
Kyrpides, N.C.5
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