-
2
-
-
0026656494
-
Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: Proposal for the creation of a new genus Atopobium
-
PubMed doi:10.1111/j.15746968.1992.tb05372.x
-
Collins MD, Wallbanks S. Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: proposal for the creation of a new genus Atopobium. FEMS Microbiol Lett 1992; 74:235-240. PubMed doi:10.1111/j.15746968.1992.tb05372.x
-
(1992)
FEMS Microbiol Lett
, vol.74
, pp. 235-240
-
-
Collins, M.D.1
Wallbanks, S.2
-
3
-
-
12244254440
-
Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients
-
PubMed doi:10.1128/JCM.41.2.558-563.2003
-
Kazor CE, Mitchell PM, Lee AM, Stokes LN, Loesche WJ, Dewhirst FE, Paster BJ. Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients. J Clin Microbiol 2003; 41:558-563. PubMed doi:10.1128/JCM.41.2.558-563.2003
-
(2003)
J Clin Microbiol
, vol.41
, pp. 558-563
-
-
Kazor, C.E.1
Mitchell, P.M.2
Lee, A.M.3
Stokes, L.N.4
Loesche, W.J.5
Dewhirst, F.E.6
Paster, B.J.7
-
4
-
-
40749117643
-
Molecular identification of bacteria on the tongue dorsum of subjects with and without halitosis
-
PubMed doi:10.1111/j.16010825.2007.01371.x
-
Riggio MP, Lennon A, Rolph HJ, Hodge PJ, Donaldson A, Maxwell AJ, Bargg J. Molecular identification of bacteria on the tongue dorsum of subjects with and without halitosis. Oral Dis 2008; 14:251-258. PubMed doi:10.1111/j.16010825.2007.01371.x
-
(2008)
Oral Dis
, vol.14
, pp. 251-258
-
-
Riggio, M.P.1
Lennon, A.2
Rolph, H.J.3
Hodge, P.J.4
Donaldson, A.5
Maxwell, A.J.6
Bargg, J.7
-
5
-
-
0038050412
-
New bacterial species associated with chronic periodontitis
-
PubMed doi:10.1177/154405910308200503
-
Kumar PS, Griffen AL, Barton JA, Paster BJ, Moeschberger ML, Leys EJ. New bacterial species associated with chronic periodontitis. J Dent Res 2003; 82:338-344. PubMed doi:10.1177/154405910308200503
-
(2003)
J Dent Res
, vol.82
, pp. 338-344
-
-
Kumar, P.S.1
Griffen, A.L.2
Barton, J.A.3
Paster, B.J.4
Moeschberger, M.L.5
Leys, E.J.6
-
6
-
-
0034781601
-
Characterisation of Eubacterium-like strains isolated from oral infections
-
PubMed
-
Downes J, Munson MA, Spratt DA, Konen E, Tarkka E, Jousimies-Somer H, Wade WG. Characterisation of Eubacterium-like strains isolated from oral infections. J Med Microbiol 2001; 50:947-951. PubMed
-
(2001)
J Med Microbiol
, vol.50
, pp. 947-951
-
-
Downes, J.1
Munson, M.A.2
Spratt, D.A.3
Konen, E.4
Tarkka, E.5
Jousimies-Somer, H.6
Wade, W.G.7
-
7
-
-
66349083859
-
Topographical and temporal diversity of the human skin microbiome
-
NISC Comparative Sequencing Program, Bouffard GG, Blakesley RW, Murray RR, et al. PubMed doi:10.1126/science.1171700
-
Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC, NISC Comparative Sequencing Program, Bouffard GG, Blakesley RW, Murray RR, et al. Topographical and temporal diversity of the human skin microbiome. Science 2009; 324:1190-1192. PubMed doi:10.1126/science.1171700
-
(2009)
Science
, vol.324
, pp. 1190-1192
-
-
Grice, E.A.1
Kong, H.H.2
Conlan, S.3
Deming, C.B.4
Davis, J.5
Young, A.C.6
-
8
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
PubMed doi:10.1093/dnares/dsm018
-
Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, Takami H, Morita H, Sharma VK, Srivastava TP, et al. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 2007; 14:169-181. PubMed doi:10.1093/dnares/dsm018
-
(2007)
DNA Res
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
Toh, H.5
Toyoda, A.6
Takami, H.7
Morita, H.8
Sharma, V.K.9
Srivastava, T.P.10
-
9
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
PubMed doi:10.1126/science.1093857
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen J, Nelson KE, Nelson W, et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004; 304:66-74. PubMed doi:10.1126/science.1093857
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, J.8
Nelson, K.E.9
Nelson, W.10
-
10
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
PubMed
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17:540-552. PubMed
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
11
-
-
0036203448
-
Multiple sequence alignment using partial order graphs
-
PubMed doi:10.1093/bioinformatics/18.3.452
-
Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinformatics 2002; 18:452-464. PubMed doi:10.1093/bioinformatics/18.3.452
-
(2002)
Bioinformatics
, vol.18
, pp. 452-464
-
-
Lee, C.1
Grasso, C.2
Sharlow, M.F.3
-
12
-
-
50249100595
-
A Rapid Bootstrap Algorithm for the RAxML Web Servers
-
PubMed doi:10.1080/10635150802429642
-
Stamatakis A, Hoover P, Rougemont J. A Rapid Bootstrap Algorithm for the RAxML Web Servers. Syst Biol 2008; 57:758-771. PubMed doi:10.1080/10635150802429642
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
13
-
-
38549144166
-
The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
-
PubMed doi:10.1093/nar/gkm884
-
Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2008; 36:D475-D479. PubMed doi:10.1093/nar/gkm884
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liolios, K.1
Mavromatis, K.2
Tavernarakis, N.3
Kyrpides, N.C.4
-
14
-
-
78349267780
-
Complete genome sequence of Cryptobacterium curtum type strain (12-3T)
-
doi:10.4056/sigs.12260
-
Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, et al. Complete genome sequence of Cryptobacterium curtum type strain (12-3T). Stand Genomic Sci 2009; 1:93-100. doi:10.4056/sigs.12260
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 93-100
-
-
Mavrommatis, K.1
Pukall, R.2
Rohde, C.3
Chen, F.4
Sims, D.5
Brettin, T.6
Kuske, C.7
Detter, J.C.8
Han, C.9
Lapidus, A.10
-
15
-
-
80053366425
-
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T)
-
doi:10.4056/sigs.33592
-
Saunders E, Pukall R, Abt B, Lapidus A, Galvina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, et al. Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T). Stand Genomic Sci 2009; 1:174-182. doi:10.4056/sigs.33592
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 174-182
-
-
Saunders, E.1
Pukall, R.2
Abt, B.3
Lapidus, A.4
Galvina Del Rio, T.5
Copeland, A.6
Tice, H.7
Cheng, J.F.8
Lucas, S.9
Chen, F.10
-
16
-
-
0025762024
-
Lactobacillus uli sp. nov. and Lactobacillus rimae sp. nov. from the human gingival crevice and emended descriptions of Lactobacillus minutus and Streptococcus parvulus
-
PubMed
-
Olsen I, Johnson JL, Moore LVM, Moore WEC. Lactobacillus uli sp. nov. and Lactobacillus rimae sp. nov. from the human gingival crevice and emended descriptions of Lactobacillus minutus and Streptococcus parvulus. Int J Syst Bacteriol 1991; 41:261-266. PubMed
-
(1991)
Int J Syst Bacteriol
, vol.41
, pp. 261-266
-
-
Olsen, I.1
Johnson, J.L.2
Moore, L.V.M.3
Moore, W.E.C.4
-
17
-
-
0020687365
-
Streptococcus parvulus (Weinberg, Nativelle, and Prévot 1937) comb, nov., nom. rev., emend
-
Cato EP. Transfer of Peptostreptococcus parvulus (Weinberg, Nativelle, and Prévot 1937) Smith 1957 to the Genus Streptococcus
-
Cato EP. Transfer of Peptostreptococcus parvulus (Weinberg, Nativelle, and Prévot 1937) Smith 1957 to the Genus Streptococcus: Streptococcus parvulus (Weinberg, Nativelle, and Prévot 1937) comb, nov., nom. rev., emend. Int J Syst Bacteriol 1983; 33:82-84.
-
(1983)
Int J Syst Bacteriol
, vol.33
, pp. 82-84
-
-
-
18
-
-
43449108562
-
The minimum information about a genome sequence (MIGS) specification
-
PubMed doi:10.1038/nbt1360
-
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008; 26:541-547. PubMed doi:10.1038/nbt1360
-
(2008)
Nat Biotechnol
, vol.26
, pp. 541-547
-
-
Field, D.1
Garrity, G.2
Gray, T.3
Morrison, N.4
Selengut, J.5
Sterk, P.6
Tatusova, T.7
Thomson, N.8
Allen, M.J.9
Angiuoli, S.V.10
-
19
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
PubMed doi:10.1073/pnas.87.12.4576
-
Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed doi:10.1073/pnas.87.12.4576
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
20
-
-
0000685441
-
-
In: Garrity GM, Boone DR, Castenholz RW, eds., 2nd Ed, The Archaea, Deeply Branching and Phototrophic Bacteria
-
Garrity GM, Holt J. In: Garrity GM, Boone DR, Castenholz RW, eds. Taxonomic Outline of the Archaea and Bacteria. Bergey's Manual of Systematic Bacteriology, 2nd Ed. Vol 1 The Archaea, Deeply Branching and Phototrophic Bacteria. 2001 pp. 155-166
-
(2001)
Taxonomic Outline of the Archaea and Bacteria. Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 155-166
-
-
Garrity, G.M.1
Holt, J.2
-
21
-
-
0030893495
-
Proposal for a New Hierarchic Classification System, Actinobacteria classis nov
-
Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a New Hierarchic Classification System, Actinobacteria classis nov. Int J Syst Bacteriol 1997; 47:479-491.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 479-491
-
-
Stackebrandt, E.1
Rainey, F.A.2
Ward-Rainey, N.L.3
-
23
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
PubMed doi:10.1038/75556
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000; 25:25-29. PubMed doi:10.1038/75556
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
24
-
-
0345466412
-
Characterization of a novel Atopobium isolate from the human vagina: Description of Atopobium vaginae sp. nov
-
PubMed
-
Rodriguez Jovita MR, Collins MD, Sjoden B, Falsen E. Characterization of a novel Atopobium isolate from the human vagina: description of Atopobium vaginae sp. nov. Int J Syst Bacteriol 1999; 49:1573-1576. PubMed
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 1573-1576
-
-
Rodriguez, J.M.R.1
Collins, M.D.2
Sjoden, B.3
Falsen, E.4
-
25
-
-
0002080954
-
Cell wall structure of anaerobic cocci
-
Weiss N. Cell wall structure of anaerobic cocci. Rev Inst Pasteur Lyon 1981; 14:53-59.
-
(1981)
Rev Inst Pasteur Lyon
, vol.14
, pp. 53-59
-
-
Weiss, N.1
-
27
-
-
72949101201
-
A phylogeny-driven genomic encyclopedia of Bacteria and Archaea
-
PubMed doi:10.1038/nature08656
-
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova N, Kunin V, Goodwin L, Wu M, Tindall BJ, et al. A phylogeny-driven genomic encyclopedia of Bacteria and Archaea. Nature 2009; 462:1056-1060. PubMed doi:10.1038/nature08656
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.6
Kunin, V.7
Goodwin, L.8
Wu, M.9
Tindall, B.J.10
-
28
-
-
79551643756
-
T)
-
doi:10.4056/sigs.761
-
T). Stand Genomic Sci 2009; 1:12-20. doi:10.4056/sigs.761
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 12-20
-
-
Sims, D.1
Brettin, T.2
Detter, J.C.3
Han, C.4
Lapidus, A.5
Copeland, A.6
Glavina Del Rio, T.7
Nolan, M.8
Chen, F.9
Lucas, S.10
-
29
-
-
84860451632
-
Prodigal Prokaryotic Dynamic Programming Genefinding Algorithm
-
Anonymous
-
Anonymous. Prodigal Prokaryotic Dynamic Programming Genefinding Algorithm. Oak Ridge National Laboratory and University of Tennessee 2009 http://compbio.ornl.gov/prodigal
-
(2009)
Oak Ridge National Laboratory and University of Tennessee
-
-
-
30
-
-
80053444388
-
-
(Submitted)
-
Pati A, Ivanova N, Mikhailova N, Ovchinikova G, Hooper SD, Lykidis A, Kyrpides NC. GenePRIMP: A Gene Prediction Improvement Pipeline for microbial genomes. (Submitted).
-
GenePRIMP: A Gene Prediction Improvement Pipeline For Microbial Genomes
-
-
Pati, A.1
Ivanova, N.2
Mikhailova, N.3
Ovchinikova, G.4
Hooper, S.D.5
Lykidis, A.6
Kyrpides, N.C.7
-
31
-
-
69949116874
-
Expert Review of Functional Annotations for Microbial Genomes
-
PubMed doi:10.1093/bioinformatics/btp393
-
Markowitz VM, Mavromatis K, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. Expert Review of Functional Annotations for Microbial Genomes. Bioinformatics 2009; 25:2271-2278. PubMed doi:10.1093/bioinformatics/btp393
-
(2009)
Bioinformatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
Mavromatis, K.2
Ivanova, N.N.3
Chen, I.M.A.4
Chu, K.5
Kyrpides, N.C.6
|