-
1
-
-
0031252084
-
Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression
-
Abe H., Yamaguchi-Shinozaki K., Urao T., Iwasaki T., Hosokawa D., Shinozaki K. Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell 1997, 9:1859-1868.
-
(1997)
Plant Cell
, vol.9
, pp. 1859-1868
-
-
Abe, H.1
Yamaguchi-Shinozaki, K.2
Urao, T.3
Iwasaki, T.4
Hosokawa, D.5
Shinozaki, K.6
-
2
-
-
0024764515
-
Nucleotide sequence of a methionine initiator tRNA gen of Arabidopsis thaliana
-
Akama K., Tanifuji S. Nucleotide sequence of a methionine initiator tRNA gen of Arabidopsis thaliana. Plant Mol. Biol. 1989, 13:599-600.
-
(1989)
Plant Mol. Biol.
, vol.13
, pp. 599-600
-
-
Akama, K.1
Tanifuji, S.2
-
3
-
-
0034880942
-
Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus
-
Araujo P.G., Casacuberta J.M., Costa A.P., Hashimoto R.Y., Grandbastien M.A., Van Sluys M.A. Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus. Mol. Genet. Genomics 2001, 266:35-41.
-
(2001)
Mol. Genet. Genomics
, vol.266
, pp. 35-41
-
-
Araujo, P.G.1
Casacuberta, J.M.2
Costa, A.P.3
Hashimoto, R.Y.4
Grandbastien, M.A.5
Van Sluys, M.A.6
-
4
-
-
0034830923
-
Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants
-
Beguiristain T., Grandbastien M.A., Puigdomenech P., Casacuberta J.M. Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants. Plant Physiol. 2001, 127:212-221.
-
(2001)
Plant Physiol.
, vol.127
, pp. 212-221
-
-
Beguiristain, T.1
Grandbastien, M.A.2
Puigdomenech, P.3
Casacuberta, J.M.4
-
5
-
-
0030265545
-
The promoter for tomato 3-hydroxy-3-methylglutaryl coenzyme A reductase gene 2 has unusual regulatory elements that direct high-level expression
-
Daraselia N.D., Tarchevskaya S., Narita J.O. The promoter for tomato 3-hydroxy-3-methylglutaryl coenzyme A reductase gene 2 has unusual regulatory elements that direct high-level expression. Plant Physiol. 1996, 112:727-733.
-
(1996)
Plant Physiol.
, vol.112
, pp. 727-733
-
-
Daraselia, N.D.1
Tarchevskaya, S.2
Narita, J.O.3
-
6
-
-
67650915750
-
Shedding light on an extremophile lifestyle through transcriptomics
-
Dassanayake M., Haas J.S., Bohnert H.J., Cheeseman J.M. Shedding light on an extremophile lifestyle through transcriptomics. New Phytol. 2009, 183:764-775.
-
(2009)
New Phytol.
, vol.183
, pp. 764-775
-
-
Dassanayake, M.1
Haas, J.S.2
Bohnert, H.J.3
Cheeseman, J.M.4
-
7
-
-
78650524469
-
Comparative transcriptomics for mangrove species: an expanding resource
-
Dassanayake M., Hass J.S., Bohnert H.J., Cheeseman J.M. Comparative transcriptomics for mangrove species: an expanding resource. Funct. Integr. Genomics 2010, 10:523-532.
-
(2010)
Funct. Integr. Genomics
, vol.10
, pp. 523-532
-
-
Dassanayake, M.1
Hass, J.S.2
Bohnert, H.J.3
Cheeseman, J.M.4
-
8
-
-
0000479431
-
Isolation of plant DNA from fresh tissue
-
Doyle J.J., Doyle J.L. Isolation of plant DNA from fresh tissue. Focus 1990, 12:13-15.
-
(1990)
Focus
, vol.12
, pp. 13-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
9
-
-
0036520859
-
Global distribution and genetic discontinuities of mangroves-emerging patterns in the evolution of Rhizophora
-
Duke N.C., Lo E.Y.Y., Sun M. Global distribution and genetic discontinuities of mangroves-emerging patterns in the evolution of Rhizophora. Trees 2002, 16:65-79.
-
(2002)
Trees
, vol.16
, pp. 65-79
-
-
Duke, N.C.1
Lo, E.Y.Y.2
Sun, M.3
-
10
-
-
0026741959
-
Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants
-
Flavell A.J., Dunbar E., Anderson R., Pearce S.R., Hartley R., Kumar A. Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res. 1992, 20:3639-3644.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3639-3644
-
-
Flavell, A.J.1
Dunbar, E.2
Anderson, R.3
Pearce, S.R.4
Hartley, R.5
Kumar, A.6
-
11
-
-
0032723359
-
Integrating DNA: transposases and retroviral integrases
-
Haren L., Ton-Hoang B., Chandler M. Integrating DNA: transposases and retroviral integrases. Ann. Rev. Microbiol. 1999, 53:245-281.
-
(1999)
Ann. Rev. Microbiol.
, vol.53
, pp. 245-281
-
-
Haren, L.1
Ton-Hoang, B.2
Chandler, M.3
-
12
-
-
77955841544
-
FaRE1: a transcriptionally active Ty1-copia retrotransposon in strawberry
-
He P., Ma Y., Zhao G., Dai H., Li H., Chang L., Zhang Z. FaRE1: a transcriptionally active Ty1-copia retrotransposon in strawberry. J. Plant Res. 2011, 123:707-714.
-
(2011)
J. Plant Res.
, vol.123
, pp. 707-714
-
-
He, P.1
Ma, Y.2
Zhao, G.3
Dai, H.4
Li, H.5
Chang, L.6
Zhang, Z.7
-
13
-
-
0027168422
-
Activation of tobacco retrotransposons during tissue culture
-
Hirochika H. Activation of tobacco retrotransposons during tissue culture. EMBO J. 1993, 12:2521-2528.
-
(1993)
EMBO J.
, vol.12
, pp. 2521-2528
-
-
Hirochika, H.1
-
14
-
-
75749117205
-
Levels and patterns of DNA variation in two sympatric mangrove species, Rhizophora apiculata and R. mucronata from Thailand
-
Inomata N., Wang X.R., Changtragoon S., Szmidt A.E. Levels and patterns of DNA variation in two sympatric mangrove species, Rhizophora apiculata and R. mucronata from Thailand. Genes Genet. Syst. 2009, 84:277-286.
-
(2009)
Genes Genet. Syst.
, vol.84
, pp. 277-286
-
-
Inomata, N.1
Wang, X.R.2
Changtragoon, S.3
Szmidt, A.E.4
-
15
-
-
4444276138
-
Genotype-dependent transcriptional activation of novel repetitive elements during cold acclimation of alfalfa (Medicago sativa)
-
Ivashuta S., Naumkina M., Gau M., Uchiyama K., Isobe S., Mizukami Y., Shimamoto Y. Genotype-dependent transcriptional activation of novel repetitive elements during cold acclimation of alfalfa (Medicago sativa). Plant J. 2002, 31:615-627.
-
(2002)
Plant J.
, vol.31
, pp. 615-627
-
-
Ivashuta, S.1
Naumkina, M.2
Gau, M.3
Uchiyama, K.4
Isobe, S.5
Mizukami, Y.6
Shimamoto, Y.7
-
16
-
-
79953078781
-
Analysis of plant diversity with retrotransposon-based molecular markers
-
Kalendar R., Flavell A.J., Ellis T.H.N., Sjakste T., Moisy C., Schulman A.H. Analysis of plant diversity with retrotransposon-based molecular markers. Heredity 2011, 106:520-530.
-
(2011)
Heredity
, vol.106
, pp. 520-530
-
-
Kalendar, R.1
Flavell, A.J.2
Ellis, T.H.N.3
Sjakste, T.4
Moisy, C.5
Schulman, A.H.6
-
17
-
-
70350156615
-
Accumulation of lead and copper in Rhizophora apiculata from Setiu mangrove forest, Terengganu, Malaysia
-
Kamaruzzaman B.Y., Ong M.C., Jalal K.C., Shahbudin S., Nor O.M. Accumulation of lead and copper in Rhizophora apiculata from Setiu mangrove forest, Terengganu, Malaysia. J. Environ. Biol. 2009, 30:821-824.
-
(2009)
J. Environ. Biol.
, vol.30
, pp. 821-824
-
-
Kamaruzzaman, B.Y.1
Ong, M.C.2
Jalal, K.C.3
Shahbudin, S.4
Nor, O.M.5
-
18
-
-
68449099151
-
Adaptive evolution involving gene duplication and insertion of a noverl Ty1/copia-like retrotransposon in soybean
-
Kanazawa A., Liu B., Kong F., Arase S., Abe J. Adaptive evolution involving gene duplication and insertion of a noverl Ty1/copia-like retrotransposon in soybean. J. Mol. Evol. 2009, 69:164-175.
-
(2009)
J. Mol. Evol.
, vol.69
, pp. 164-175
-
-
Kanazawa, A.1
Liu, B.2
Kong, F.3
Arase, S.4
Abe, J.5
-
19
-
-
0036594382
-
Growth of a mangrove (Rhizophora apiculata) seedlings as influenced by GA3, light and salinity
-
Kathiresan K., Rajendran N. Growth of a mangrove (Rhizophora apiculata) seedlings as influenced by GA3, light and salinity. Rev. Biol. Trop. 2002, 50:525-530.
-
(2002)
Rev. Biol. Trop.
, vol.50
, pp. 525-530
-
-
Kathiresan, K.1
Rajendran, N.2
-
21
-
-
0036836595
-
Molecular phylogeny of mangroves IX: molecular marker assisted intra-specific variation and species relationships in the Indian mangrove tribe Rhizophoreae
-
Lakshmi M., Parani M., Parida A. Molecular phylogeny of mangroves IX: molecular marker assisted intra-specific variation and species relationships in the Indian mangrove tribe Rhizophoreae. Aquat. Bot. 2002, 74:201-217.
-
(2002)
Aquat. Bot.
, vol.74
, pp. 201-217
-
-
Lakshmi, M.1
Parani, M.2
Parida, A.3
-
22
-
-
0036085047
-
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
-
Lescot M., Dehais P., Thijs G., Marchal K., Moreau Y., Van de Peer Y., Rouze P., Rombauts S. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 2002, 30:325-327.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 325-327
-
-
Lescot, M.1
Dehais, P.2
Thijs, G.3
Marchal, K.4
Moreau, Y.5
Van de Peer, Y.6
Rouze, P.7
Rombauts, S.8
-
23
-
-
0034917751
-
Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses
-
Malik H.S., Eickbush T.H. Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res. 2001, 11:1187-1197.
-
(2001)
Genome Res.
, vol.11
, pp. 1187-1197
-
-
Malik, H.S.1
Eickbush, T.H.2
-
24
-
-
0027651273
-
BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.)
-
Manninen I., Schulman A.H. BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol. Biol. 1993, 22:829-846.
-
(1993)
Plant Mol. Biol.
, vol.22
, pp. 829-846
-
-
Manninen, I.1
Schulman, A.H.2
-
25
-
-
0031793897
-
Extreme structural heterogeneity among the members of a maize retrotransposon family
-
Marillonnet S., Wessler S.R. Extreme structural heterogeneity among the members of a maize retrotransposon family. Genetics 1998, 150:1245-1256.
-
(1998)
Genetics
, vol.150
, pp. 1245-1256
-
-
Marillonnet, S.1
Wessler, S.R.2
-
26
-
-
0030939422
-
The promoter of the tobacco Tnt1 retrotransposon is induced by wounding and by abiotic stress
-
Mhiri C., Morel J.B., Vernhettes S., Casacuberta J.M., Lucas H., Grandbastien M.A. The promoter of the tobacco Tnt1 retrotransposon is induced by wounding and by abiotic stress. Plant Mol. Biol. 1997, 33:257-266.
-
(1997)
Plant Mol. Biol.
, vol.33
, pp. 257-266
-
-
Mhiri, C.1
Morel, J.B.2
Vernhettes, S.3
Casacuberta, J.M.4
Lucas, H.5
Grandbastien, M.A.6
-
27
-
-
0030771475
-
RIRE1, a retrotransposon from wild rice Oryza australiensis
-
Noma K., Nakajima R., Ohtsubo H., Ohtsubo E. RIRE1, a retrotransposon from wild rice Oryza australiensis. Genes Genet. Syst. 1997, 72:131-140.
-
(1997)
Genes Genet. Syst.
, vol.72
, pp. 131-140
-
-
Noma, K.1
Nakajima, R.2
Ohtsubo, H.3
Ohtsubo, E.4
-
28
-
-
0030972694
-
Rapid induction by Wsunding and bacterial infection of an S gene family receptorlike kinase gene in Brassica oleracea
-
Pastuglia M., Roby D., Dumas C., Cockagi J.M. Rapid induction by Wsunding and bacterial infection of an S gene family receptorlike kinase gene in Brassica oleracea. Plant Cell 1997, 9:49-60.
-
(1997)
Plant Cell
, vol.9
, pp. 49-60
-
-
Pastuglia, M.1
Roby, D.2
Dumas, C.3
Cockagi, J.M.4
-
29
-
-
0036854310
-
Genes of the Pseudoviridae (Ty1/copia retrotransposons)
-
Petersoon-Burch B.D., Voytas D.F. Genes of the Pseudoviridae (Ty1/copia retrotransposons). Mol. Biol. Evol. 2002, 19:1832-1845.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1832-1845
-
-
Petersoon-Burch, B.D.1
Voytas, D.F.2
-
30
-
-
0028038451
-
Microbial elicitors of plant defence responses activate transcription of a retrotransposon
-
Pouteau S., Grandbastien M.-A., Boccara M. Microbial elicitors of plant defence responses activate transcription of a retrotransposon. Plant J. 1994, 5:532-542.
-
(1994)
Plant J.
, vol.5
, pp. 532-542
-
-
Pouteau, S.1
Grandbastien, M.-A.2
Boccara, M.3
-
31
-
-
33947376045
-
CIRE1, a novel transcriptionally active Ty1-copia retrotransposon from Citrus sinensis
-
Rico-Cabanas L., Martinez-Izquierdo J.A. CIRE1, a novel transcriptionally active Ty1-copia retrotransposon from Citrus sinensis. Mol.Genet. Genomics 2007, 277:365-377.
-
(2007)
Mol.Genet. Genomics
, vol.277
, pp. 365-377
-
-
Rico-Cabanas, L.1
Martinez-Izquierdo, J.A.2
-
32
-
-
0031104658
-
Identification of a methyl jasmonate-responsive region in the promoter of a lipoxygenase 1 gene expressed in barley grain
-
Rouster J., Leah R., Mundy J., Cameron-mills V. Identification of a methyl jasmonate-responsive region in the promoter of a lipoxygenase 1 gene expressed in barley grain. Plant J. 1997, 11(3):513-523.
-
(1997)
Plant J.
, vol.11
, Issue.3
, pp. 513-523
-
-
Rouster, J.1
Leah, R.2
Mundy, J.3
Cameron-mills, V.4
-
33
-
-
0026939038
-
TGA1 and G-Box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-Box-like element TGACGTGG
-
Schindler U., Beckmann H., Cashmore A.R. TGA1 and G-Box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-Box-like element TGACGTGG. Plant Cell 1992, 4:1309-1319.
-
(1992)
Plant Cell
, vol.4
, pp. 1309-1319
-
-
Schindler, U.1
Beckmann, H.2
Cashmore, A.R.3
-
34
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
Sonnhammer E.L., Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 1995, 167:GC1-GC10.
-
(1995)
Gene
, vol.167
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
35
-
-
34548862848
-
Sequence-specific amplification polymorphism (SSAPs), a multi-locus approach for analyzing transposon insertions
-
Syed N.H., Flawell A.J. Sequence-specific amplification polymorphism (SSAPs), a multi-locus approach for analyzing transposon insertions. Nat. Protoc. 2006, 1:2746-2752.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2746-2752
-
-
Syed, N.H.1
Flawell, A.J.2
-
36
-
-
0033136093
-
A 13-bp cisregulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in response to tissue culture, wounding, methyl jasmonate and fungal elicitors
-
Takeda S., Sugimoto K., Otsuki H., Hirochika H. A 13-bp cisregulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in response to tissue culture, wounding, methyl jasmonate and fungal elicitors. Plant J. 1999, 18:383-393.
-
(1999)
Plant J.
, vol.18
, pp. 383-393
-
-
Takeda, S.1
Sugimoto, K.2
Otsuki, H.3
Hirochika, H.4
-
37
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 10.1093/molbev/msr121.
-
(2011)
Mol. Biol. Evol.
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
38
-
-
80053640646
-
Habitat differentiation between estuarine and inland Hibiscus tiliaceus L. (Malvaceae) as revealed by retrotransposon-based SSAP marker
-
Tang T., He L., Peng F., Shi S. Habitat differentiation between estuarine and inland Hibiscus tiliaceus L. (Malvaceae) as revealed by retrotransposon-based SSAP marker. Aust. J. Bot. 2011, 59:515-522.
-
(2011)
Aust. J. Bot.
, vol.59
, pp. 515-522
-
-
Tang, T.1
He, L.2
Peng, F.3
Shi, S.4
-
39
-
-
77950353370
-
The CCAAT-binding complex coordinates the oxidative stress response in eukaryotes
-
Thon M., Abdallah Al Q., Hortschansky P., Scharf D.H., Eisendle M., Haas H., Brakhage A.A. The CCAAT-binding complex coordinates the oxidative stress response in eukaryotes. Nucleic Acids Res. 2010, 38:1098-1113.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1098-1113
-
-
Thon, M.1
Abdallah Al, Q.2
Hortschansky, P.3
Scharf, D.H.4
Eisendle, M.5
Haas, H.6
Brakhage, A.A.7
-
41
-
-
0026660056
-
Copia-like retrotransposons are ubiquitous among plants
-
Voytas D.F., Cummings M.P., Koniczny A., Ausubel F.M., Rodermel S.R. Copia-like retrotransposons are ubiquitous among plants. Proc. Natl. Acad. Sci. U.SA. 1992, 89:7124-7128.
-
(1992)
Proc. Natl. Acad. Sci. U.SA.
, vol.89
, pp. 7124-7128
-
-
Voytas, D.F.1
Cummings, M.P.2
Koniczny, A.3
Ausubel, F.M.4
Rodermel, S.R.5
-
42
-
-
33644533829
-
Expression analysis of barley (Hordeum vulgare L.) during salinity stress
-
Walia H., Wilson C., Wahid A., Condamine P., Cui X., Close T.J. Expression analysis of barley (Hordeum vulgare L.) during salinity stress. Funct. Integr. Genomics 2006, 6:143-156.
-
(2006)
Funct. Integr. Genomics
, vol.6
, pp. 143-156
-
-
Walia, H.1
Wilson, C.2
Wahid, A.3
Condamine, P.4
Cui, X.5
Close, T.J.6
-
43
-
-
0030991387
-
Genetic distribution of BARE-1- like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphism (S-SAP)
-
Waugh R., McLean K., Flavell A.J., Pearce S.R., Kumar A., Thomas B.B., Powell W. Genetic distribution of BARE-1- like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphism (S-SAP). Mol. Gen. Genet. 1997, 253:687-694.
-
(1997)
Mol. Gen. Genet.
, vol.253
, pp. 687-694
-
-
Waugh, R.1
McLean, K.2
Flavell, A.J.3
Pearce, S.R.4
Kumar, A.5
Thomas, B.B.6
Powell, W.7
-
44
-
-
77956854737
-
Polymorphism of a new Ty1-copia retrotransposon in durum wheat under salt and light stresses
-
Woodrow P., Pontecorvo G., Fantaccione S., Fuggi A., Kafantaris I., Parisi D., Carillo P. Polymorphism of a new Ty1-copia retrotransposon in durum wheat under salt and light stresses. Theor. Appl. Genet. 2010, 121:311-322.
-
(2010)
Theor. Appl. Genet.
, vol.121
, pp. 311-322
-
-
Woodrow, P.1
Pontecorvo, G.2
Fantaccione, S.3
Fuggi, A.4
Kafantaris, I.5
Parisi, D.6
Carillo, P.7
-
45
-
-
0025006614
-
Origin and evolution of retroelements based upon their reverse transcriptase sequences
-
Xiong Y., Eickbush T.H. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 1990, 9:3353-3362.
-
(1990)
EMBO J.
, vol.9
, pp. 3353-3362
-
-
Xiong, Y.1
Eickbush, T.H.2
|