메뉴 건너뛰기




Volumn 53, Issue 5, 2013, Pages 1191-1199

Characterization of biaryl torsional energetics and its treatment in OPLS all-atom force fields

Author keywords

[No Author keywords available]

Indexed keywords

CHEMISTRY;

EID: 84878198847     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci4001597     Document Type: Article
Times cited : (85)

References (45)
  • 1
    • 39449105474 scopus 로고    scopus 로고
    • Small molecule conformational preferences derived from crystal structure data. A medicinal chemistry focused analysis
    • DOI 10.1021/ci7002494
    • Brameld, K. A.; Kuhn, B.; Reuter, D. C.; Stahl, M. Small molecule conformational preferences derived from crystal structure data. A medicinal chemistry focused analysis J. Chem. Inf. Model. 2008, 48, 1-24 (Pubitemid 351271046)
    • (2008) Journal of Chemical Information and Modeling , vol.48 , Issue.1 , pp. 1-24
    • Brameld, K.A.1    Kuhn, B.2    Reuter, D.C.3    Stahl, M.4
  • 4
    • 84870051342 scopus 로고    scopus 로고
    • Virtual screening and optimization yield low-nanomolar inhibitors of the tautomerase activity of Plasmodium falciparum macrophage inhibitory factor
    • Dahlgren, M. K.; Garcia, A. B.; Hare, A. A.; Tirado-Rives, J.; Leng, L.; Bucala, R.; Jorgensen, W. L. Virtual screening and optimization yield low-nanomolar inhibitors of the tautomerase activity of Plasmodium falciparum macrophage inhibitory factor J. Med. Chem. 2012, 55, 10148-10159
    • (2012) J. Med. Chem. , vol.55 , pp. 10148-10159
    • Dahlgren, M.K.1    Garcia, A.B.2    Hare, A.A.3    Tirado-Rives, J.4    Leng, L.5    Bucala, R.6    Jorgensen, W.L.7
  • 6
    • 2042507954 scopus 로고
    • Palladium-catalyzed cross-coupling reactions of organoboron compounds
    • Miyaura, N.; Suzuki, A. Palladium-catalyzed cross-coupling reactions of organoboron compounds Chem. Rev. 1995, 95, 2457-2483
    • (1995) Chem. Rev. , vol.95 , pp. 2457-2483
    • Miyaura, N.1    Suzuki, A.2
  • 7
    • 85065137145 scopus 로고
    • The Ullman synthesis of biaryls
    • Fanta, P. E. The Ullman synthesis of biaryls Synthesis 1974, 1, 9-21
    • (1974) Synthesis , vol.1 , pp. 9-21
    • Fanta, P.E.1
  • 8
    • 31044435322 scopus 로고    scopus 로고
    • Anchoring the torsional potential of biphenyl at the ab initio level: The role of basis set versus correlation effects
    • Sancho-García, J. C.; Cornil, J. Anchoring the torsional potential of biphenyl at the ab initio level: the role of basis set versus correlation effects J. Chem. Theory Comput. 2005, 1, 581-589
    • (2005) J. Chem. Theory Comput. , vol.1 , pp. 581-589
    • Sancho-García, J.C.1    Cornil, J.2
  • 9
    • 55349123003 scopus 로고    scopus 로고
    • Torsional barriers and equilibrium angle of biphenyl: Reconciling theory with experiment
    • Johansson, M. P.; Olsen, J. Torsional barriers and equilibrium angle of biphenyl: reconciling theory with experiment J. Chem. Theory Comput. 2008, 4, 1460-1471
    • (2008) J. Chem. Theory Comput. , vol.4 , pp. 1460-1471
    • Johansson, M.P.1    Olsen, J.2
  • 10
    • 0002305877 scopus 로고
    • Structure and barrier of internal rotation of biphenyl derivatives in the gaseous state. Part 1. The molecular structure and normal coordinate analysis of normal biphenyl and perdeuterated biphenyl
    • Almenningen, A.; Bastiansen, O.; Fernholt, L.; Cyvin, B. N.; Cyvin, S. J.; Samdal, S. Structure and barrier of internal rotation of biphenyl derivatives in the gaseous state. Part 1. The molecular structure and normal coordinate analysis of normal biphenyl and perdeuterated biphenyl J. Mol. Struct. 1985, 128, 59-76
    • (1985) J. Mol. Struct. , vol.128 , pp. 59-76
    • Almenningen, A.1    Bastiansen, O.2    Fernholt, L.3    Cyvin, B.N.4    Cyvin, S.J.5    Samdal, S.6
  • 11
    • 0011159935 scopus 로고
    • Structure and barrier to internal rotation of biphenyl derivatives in the gaseous state. Part 2. Structure of 3,3′-dibromo-,3,5,4′-tribromo- and 3,5,3′,5′-tetrabromobiphenyl
    • Almenningen, A.; Bastiansen, O.; Fernholt, L.; Gundersen, S.; Kloster-Jensen, E.; Cyvin, B. N.; Cyvin, S. J.; Samdal, S.; Skancke, A. Structure and barrier to internal rotation of biphenyl derivatives in the gaseous state. Part 2. Structure of 3,3′-dibromo-,3,5,4′-tribromo- and 3,5,3′,5′-tetrabromobiphenyl J. Mol. Struct. 1985, 128, 77-93
    • (1985) J. Mol. Struct. , vol.128 , pp. 77-93
    • Almenningen, A.1    Bastiansen, O.2    Fernholt, L.3    Gundersen, S.4    Kloster-Jensen, E.5    Cyvin, B.N.6    Cyvin, S.J.7    Samdal, S.8    Skancke, A.9
  • 12
    • 0013101601 scopus 로고
    • Structure and barrier of internal rotation of biphenyl derivatives in the gaseous state. Part 3. Structure of 4-fluoro-, 4,4′-difluoro-, 4-chloro- and 4,4′-dichlorobiphenyl
    • Almenningen, A.; Bastlansen, O.; Gundersen, S.; Samdal, S.; Skancke, A. Structure and barrier of internal rotation of biphenyl derivatives in the gaseous state. Part 3. Structure of 4-fluoro-, 4,4′-difluoro-, 4-chloro- and 4,4′-dichlorobiphenyl J. Mol. Struct. 1985, 128, 95-114
    • (1985) J. Mol. Struct. , vol.128 , pp. 95-114
    • Almenningen, A.1    Bastlansen, O.2    Gundersen, S.3    Samdal, S.4    Skancke, A.5
  • 13
    • 4143081998 scopus 로고
    • Structure and barrier of internal rotation of biphenyl derivatives in the gaseous state. Part 4. Barrier of internal rotation in biphenyl, perdeuterated biphenyl and seven non- ortho -substituted halogen derivatives
    • Bastiansen, O.; Samdal, S. Structure and barrier of internal rotation of biphenyl derivatives in the gaseous state. Part 4. Barrier of internal rotation in biphenyl, perdeuterated biphenyl and seven non- ortho -substituted halogen derivatives J. Mol. Struct. 1985, 128, 115-125
    • (1985) J. Mol. Struct. , vol.128 , pp. 115-125
    • Bastiansen, O.1    Samdal, S.2
  • 14
    • 0346948589 scopus 로고
    • Structure and barrier to internal rotation of biphenyl derivatives in the gaseous state. Part 5. A reinvestigation of the molecular structure and internal rotation of perfluorobiphenyl
    • Bastiansen, O.; Gundersen, S.; Samdal, S. Structure and barrier to internal rotation of biphenyl derivatives in the gaseous state. Part 5. A reinvestigation of the molecular structure and internal rotation of perfluorobiphenyl Acta Chem. Scand. 1989, 43, 6-10
    • (1989) Acta Chem. Scand. , vol.43 , pp. 6-10
    • Bastiansen, O.1    Gundersen, S.2    Samdal, S.3
  • 15
    • 77950210569 scopus 로고    scopus 로고
    • Recent advances in stereodynamics and conformational analysis by dynamic NMR and theoretical calculations
    • Casarini, D.; Lunazzi, L.; Mazzanti, A. Recent advances in stereodynamics and conformational analysis by dynamic NMR and theoretical calculations Eur. J. Org. Chem. 2010, 2035-2056
    • (2010) Eur. J. Org. Chem. , pp. 2035-2056
    • Casarini, D.1    Lunazzi, L.2    Mazzanti, A.3
  • 16
    • 0037129454 scopus 로고    scopus 로고
    • Twist angles and rotational energy barriers of biphenyl and substituted biphenyls
    • DOI 10.1021/jp0122124
    • Grein, F. Twist angles and rotational energy barriers of biphenyl and substituted biphenyls J. Phys. Chem. A 2002, 106, 3823-3827 (Pubitemid 35289767)
    • (2002) Journal of Physical Chemistry A , vol.106 , Issue.15 , pp. 3823-3827
    • Grein, F.1
  • 17
    • 0001425849 scopus 로고    scopus 로고
    • Torsional barriers in biphenyl, 2,2′-bipyridine and 2-phenylpyridine
    • Göller, A.; Grummt, U. -W. Torsional barriers in biphenyl, 2,2′-bipyridine and 2-phenylpyridine Chem. Phys. Lett. 2000, 321, 399-405
    • (2000) Chem. Phys. Lett. , vol.321 , pp. 399-405
    • Göller, A.1    Grummt, U.-W.2
  • 18
    • 26444453899 scopus 로고    scopus 로고
    • Torsional potential of 4,4′-bipyridine: Ab initio analysis of dispersion and vibrational effects
    • Pérez-Jiménez, á. J.; Sancho-García, J. C.; Pérez-Jordá, J. M. Torsional potential of 4,4′-bipyridine: Ab initio analysis of dispersion and vibrational effects J. Chem. Phys. 2005, 123, 134309
    • (2005) J. Chem. Phys. , vol.123 , pp. 134309
    • Pérez-Jiménez Á., J.1    Sancho-García, J.C.2    Pérez-Jordá, J.M.3
  • 19
    • 0000614356 scopus 로고
    • Systematic effects of crystal-packing forces: Biphenyl fragments with H atoms in all four ortho positions
    • Brock, C. P.; Minton, R. P. Systematic effects of crystal-packing forces: biphenyl fragments with H atoms in all four ortho positions J. Am. Chem. Soc. 1989, 111, 4586-4593
    • (1989) J. Am. Chem. Soc. , vol.111 , pp. 4586-4593
    • Brock, C.P.1    Minton, R.P.2
  • 20
    • 1642357706 scopus 로고    scopus 로고
    • The Many Roles of Computation in Drug Discovery
    • DOI 10.1126/science.1096361
    • Jorgensen, W. L. The many roles of computation in drug discovery Science 2004, 303, 1813-1818 (Pubitemid 38374866)
    • (2004) Science , vol.303 , Issue.5665 , pp. 1813-1818
    • Jorgensen, W.L.1
  • 22
    • 0242443693 scopus 로고    scopus 로고
    • Force fields for protein simulations
    • DOI 10.1016/S0065-3233(03)66002-X
    • For a review, see: Ponder, J. W.; Case, D. A. Force Fields for Protein Simulations Adv. Prot. Chem. 2003, 66, 27-85 (Pubitemid 37392314)
    • (2003) Advances in Protein Chemistry , vol.66 , pp. 27-85
    • Ponder, J.W.1    Case, D.A.2
  • 23
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
    • DOI 10.1021/ja9621760, PII S0002786396021762
    • Jorgensen, W. L.; Maxwell, D. S.; Tirado-Rives, J. Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids J. Am. Chem.Soc. 1996, 118, 11225-11236 (Pubitemid 26399746)
    • (1996) Journal of the American Chemical Society , vol.118 , Issue.45 , pp. 11225-11236
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3
  • 26
    • 0001465661 scopus 로고    scopus 로고
    • Pseudospectral localized generalized Moøller-Plesset methods with a generalized valence bond reference wave function: Theory and calculation of conformational energies
    • Murphy, R. B.; Pollard, W. T.; Friesner, R. A. Pseudospectral localized generalized Møller-Plesset methods with a generalized valence bond reference wave function: Theory and calculation of conformational energies J. Chem. Phys. 1997, 106, 5073-5084 (Pubitemid 126596807)
    • (1996) Journal of Chemical Physics , vol.106 , Issue.12 , pp. 5073-5084
    • Murphy, R.B.1    Pollard, W.T.2    Friesner, R.A.3
  • 27
    • 29044442254 scopus 로고    scopus 로고
    • Molecular modeling of organic and biomolecular systems using BOSS and MCPRO
    • DOI 10.1002/jcc.20297
    • Jorgensen, W. L.; Tirado-Rives, J. Molecular modeling of organic and biomolecular systems using BOSS and MCPRO J. Comput. Chem. 2005, 26, 1689-1700 (Pubitemid 43076181)
    • (2005) Journal of Computational Chemistry , vol.26 , Issue.16 , pp. 1689-1700
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 28
    • 0042786508 scopus 로고    scopus 로고
    • Development of an all-atom force field for heterocycles. Properties of liquid pyridine and diazenes
    • PII S0166128097002376
    • Jorgensen, W. L.; McDonald, N. A. Development of an all-atom force field for heterocycles. Properties of liquid pyridine and diazenes J. Mol. Struct. (Theochem) 1998, 424, 145-155 (Pubitemid 128388407)
    • (1998) Journal of Molecular Structure: THEOCHEM , vol.424 , Issue.1-2 , pp. 145-155
    • Jorgensen, W.L.1    McDonald, N.A.2
  • 29
    • 0000726604 scopus 로고    scopus 로고
    • Development of an all-atom force field for heterocycles. Properties of liquid pyrrole, furan, diazoles, and oxazoles
    • McDonald, N. A.; Jorgensen, W. L. Development of an all-atom force field for heterocycles. Properties of liquid pyrrole, furan, diazoles, and oxazoles J. Phys. Chem. B 1998, 102, 8049-8059 (Pubitemid 128578423)
    • (1998) Journal of Physical Chemistry B , vol.102 , Issue.41 , pp. 8049-8059
    • McDonald, N.A.1    Jorgensen, W.L.2
  • 31
    • 16344389354 scopus 로고    scopus 로고
    • The evolution of synthetic oral drug properties
    • DOI 10.1016/j.bmcl.2004.12.024
    • Proudfoot, J. R. The evolution of synthetic oral drug properties Bioorg. Med. Chem. Lett. 2005, 15, 1087-1090 (Pubitemid 40467436)
    • (2005) Bioorganic and Medicinal Chemistry Letters , vol.15 , Issue.4 , pp. 1087-1090
    • Proudfoot, J.R.1
  • 32
    • 34250746633 scopus 로고    scopus 로고
    • American Chemical Society: Washington, D.C.
    • Annual Reports in Medicinal Chemistry, American Chemical Society: Washington, D.C., 1999-2012; Vol. 34-47.
    • (1999) Annual Reports in Medicinal Chemistry , vol.3447
  • 43
    • 33748779810 scopus 로고    scopus 로고
    • 4-(4-Fluoro-3-phenoxyphenyl)-6-(4-fluorophenyl)-2-oxo-1, 2-dihydro-pyridine-3-carbonitrile and the 6-(4-methylphenyl)- analogue
    • Chopra, D.; Mohan, T. P.; Vishalakshi, B.; Row, T. N. G. 4-(4-Fluoro-3-phenoxyphenyl)-6-(4-fluorophenyl)-2-oxo-1,2-dihydro-pyridine-3- carbonitrile and the 6-(4-methylphenyl)- analogue Acta Crystallogr., Sect. C: Cryst. Struct. Commun. 2006, C62, o540-o543
    • (2006) Acta Crystallogr., Sect. C: Cryst. Struct. Commun. , vol.62
    • Chopra, D.1    Mohan, T.P.2    Vishalakshi, B.3    Row, T.N.G.4
  • 44
    • 0036836947 scopus 로고    scopus 로고
    • 5-Substituted-1H-tetrazoles as carboxylic acid isosteres: Medicinal chemistry and synthetic methods
    • Herr, R. J. 5-Substituted-1H-tetrazoles as carboxylic acid isosteres: Medicinal chemistry and synthetic methods Bioorg. Med. Chem. 2002, 10, 3379-3393
    • (2002) Bioorg. Med. Chem. , vol.10 , pp. 3379-3393
    • Herr, R.J.1
  • 45
    • 56349167796 scopus 로고
    • Vapor Pressure and Heat of Vaporization of Diphenyl
    • Chipman, J.; Peltier, S. B. Vapor Pressure and Heat of Vaporization of Diphenyl Ind. Eng. Chem. 1929, 21, 1106-1108
    • (1929) Ind. Eng. Chem. , vol.21 , pp. 1106-1108
    • Chipman, J.1    Peltier, S.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.