DNA microarray profiling of genes differentially regulated by three heterochromatin protein 1 (HP1) homologs in Drosophila

Biochemical and Biophysical Research Communications

Volumn 434, Issue 4, 2013, Pages 820-828

  Lee, Dong Hoon ^a   Li, Yingxiu ^a   Shin, Dong Hee ^a   Yi, Sang Ah ^b   Bang, So Young ^b   Park, Eun Kyung ^b   Han, Jeung Whan ^b   Kwon, So Hee ^a  

^a Yonsei University   (South Korea)

^b Sungkyunkwan University   (South Korea)

Author keywords

Gene regulation; HP1; HP1a; HP1b; HP1c; KD; KDM; KMT; Microarray analysis

Indexed keywords

HETEROCHROMATIN PROTEIN 1;

ANIMAL CELL; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; DNA MICROARRAY; DOWN REGULATION; DROSOPHILA; GENE ACTIVATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE TARGETING; GENETIC TRANSCRIPTION; MOLECULAR MECHANICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DEPLETION; UPREGULATION;

ANIMALS; CELL LINE; CHROMOSOMAL PROTEINS, NON-HISTONE; CLUSTER ANALYSIS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENE EXPRESSION PROFILING; GENE KNOCKDOWN TECHNIQUES; NUCLEAR PROTEINS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

EUKARYOTA;

EID: 84878197005     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2013.04.020     Document Type: Article

References (28)

1. Ebert A., Lein S., Schotta G., Reuter G. Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res. 2006, 14:377-392.
2. Grewal S.I., Elgin S.C. Transcription and RNA interference in the formation of heterochromatin. Nature 2007, 447:399-406.
3. James T.C., Eissenberg J.C., Craig C., Dietrich V., Hobson A., Elgin S.C. Distribution patterns of HP1, a heterochromatin-associated nonhistone chromosomal protein of Drosophila. Eur. J. Cell Biol. 1989, 50:170-180.
4. James T.C., Elgin S.C. Identification of a nonhistone chromosomal protein associated with heterochromatin in Drosophila melanogaster and its gene. Mol. Cell. Biol. 1986, 6:3862-3872.
5. Eissenberg J.C., James T.C., Foster-Hartnett D.M., Hartnett T., Ngan V., Elgin S.C. Mutation in a heterochromatin-specific chromosomal protein is associated with suppression of position-effect variegation in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 1990, 87:9923-9927.
6. Lomberk G., Wallrath L., Urrutia R. The Heterochromatin protein 1 family. Genome Biol. 2006, 7:228.
7. Vermaak D., Henikoff S., Malik H.S. Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. PLoS Genet. 2005, 1:96-108.
8. Brasher S.V., Smith B.O., Fogh R.H., Nietlispach D., Thiru A., Nielsen P.R., Broadhurst R.W., Ball L.J., Murzina N.V., Laue E.D. The structure of mouse HP1 suggests a unique mode of single peptide recognition by the shadow chromo domain dimer. EMBO J. 2000, 19:1587-1597.
9. Lomberk G., Bensi D., Fernandez-Zapico M.E., Urrutia R. Evidence for the existence of an HP1-mediated subcode within the histone code. Nat. Cell Biol. 2006, 8:407-415.
10. Smothers J.F., Henikoff S. The HP1 chromo shadow domain binds a consensus peptide pentamer. Curr. Biol. 2000, 10:27-30.
11. Stephens G.E., Slawson E.E., Craig C.A., Elgin S.C. Interaction of heterochromatin protein 2 with HP1 defines a novel HP1-binding domain. Biochemistry 2005, 44:13394-13403.
12. Kwon S.H., Workman J.L. The changing faces of HP1: from heterochromatin formation and gene silencing to euchromatic gene expression: HP1 acts as a positive regulator of transcription. BioEssays 2011, 33:280-289.
13. Kellum R. Is HP1 an RNA detector that functions both in repression and activation?. J. Cell Biol. 2003, 161:671-672.
14. Grewal S.I., Moazed D. Heterochromatin and epigenetic control of gene expression. Science 2003, 301:798-802.
15. Paro R., Hogness D.S. The Polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila. Proc. Natl. Acad. Sci. USA 1991, 88:263-267.
16. Bannister A.J., Zegerman P., Partridge J.F., Miska E.A., Thomas J.O., Allshire R.C., Kouzarides T. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 2001, 410:120-124.
17. Cryderman D.E., Grade S.K., Li Y., Fanti L., Pimpinelli S., Wallrath L.L. Role of Drosophila HP1 in euchromatic gene expression. Dev. Dyn. 2005, 232:767-774.
18. De Lucia F., Ni J.Q., Vaillant C., Sun F.L. HP1 modulates the transcription of cell-cycle regulators in Drosophila melanogaster. Nucleic Acids Res. 2005, 33:2852-2858.
19. Piacentini L., Fanti L., Berloco M., Perrini B., Pimpinelli S. Heterochromatin protein 1 (HP1) is associated with induced gene expression in Drosophila euchromatin. J. Cell Biol. 2003, 161:707-714.
20. Vakoc C.R., Mandat S.A., Olenchock B.A., Blobel G.A. Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin. Mol. Cell 2005, 19:381-391.
21. Greil F., van der Kraan I., Delrow J., Smothers J.F., de Wit E., Bussemaker H.J., van Driel R., Henikoff S., van Steensel B. Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location. Genes Dev. 2003, 17:2825-2838.
22. Kwon S.H., Florens L., Swanson S.K., Washburn M.P., Abmayr S.M., Workman J.L. Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II. Genes Dev. 2010, 24:2133-2145.
23. Harvey N.L., Daish T., Mills K., Dorstyn L., Quinn L.M., Read S.H., Richardson H., Kumar S. Characterization of the Drosophila caspase, DAMM. J. Biol. Chem. 2001, 276:25342-25350.
24. Lu Y., Wang F., Li Y., Ferris J., Lee J.A., Gao F.B. The Drosophila homologue of the Angelman syndrome ubiquitin ligase regulates the formation of terminal dendritic branches. Hum. Mol. Genet. 2009, 18:454-462.
25. Kishino T., Lalande M., Wagstaff J. UBE3A/E6-AP mutations cause Angelman syndrome. Nat. Genet. 1997, 15:70-73.
26. Blum R., Konnerth A. Neurotrophin-mediated rapid signaling in the central nervous system: mechanisms and functions. Physiology (Bethesda) 2005, 20:70-78.
27. Lu B., Pang P.T., Woo N.H. The yin and yang of neurotrophin action. Nat. Rev. Neurosci. 2005, 6:603-614.
28. Font-Burgada J., Rossell D., Auer H., Azorin F. Drosophila HP1c isoform interacts with the zinc-finger proteins WOC and Relative-of-WOC to regulate gene expression. Genes Dev. 2008, 22:3007-3023.