Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions

Current Biology

Volumn 23, Issue 10, 2013, Pages 862-872

  Nasser, Waleed ^a   Santhanam, Balaji ^a   Miranda, Edward Roshan ^a   Parikh, Anup ^a   Juneja, Kavina ^b   Rot, Gregor ^c   Dinh, Chris ^a   Chen, Rui ^a   Zupan, Blaz ^a,c   Shaulsky, Gad ^a   Kuspa, Adam ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b RICE UNIVERSITY   (United States)

^c UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; DICTYOSTELIUM; GENE; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENETICS; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; HOST PATHOGEN INTERACTION; MUTATION; PHYSIOLOGY;

DICTYOSTELIUM; GENE EXPRESSION PROFILING; GENES, BACTERIAL; GENES, PROTOZOAN; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIA; HOST-PATHOGEN INTERACTIONS; MUTATION; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); DICTYOSTELIIDA; DICTYOSTELIUM DISCOIDEUM; NEGIBACTERIA; POSIBACTERIA;

EID: 84878016418     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2013.04.034     Document Type: Article

References (49)

1. K.B. Raper Dictyostelium discoideum, a new species of slime mold from decaying forest leaves J. Agric. Res. 50 1935 135 147
2. K.B. Raper The Influence of the Bacterial Associate and of the Medium upon the Growth and Development of Dictyostelium discoideum Volume 22 1936 Harvard University Cambridge, MA
3. M. Clarke Recent insights into host-pathogen interactions from Dictyostelium Cell. Microbiol. 12 2010 283 291
4. M. Steinert Pathogen-host interactions in Dictyostelium, Legionella, Mycobacterium and other pathogens Semin. Cell Dev. Biol. 22 2011 70 76
5. S. Bozzaro, and L. Eichinger The professional phagocyte Dictyostelium discoideum as a model host for bacterial pathogens Curr. Drug Targets 12 2011 942 954
6. J.M. Solomon, A. Rupper, J.A. Cardelli, and R.R. Isberg Intracellular growth of Legionella pneumophila in Dictyostelium discoideum, a system for genetic analysis of host-pathogen interactions Infect. Immun. 68 2000 2939 2947
7. P. Cosson, L. Zulianello, O. Join-Lambert, F. Faurisson, L. Gebbie, M. Benghezal, C. Van Delden, L.K. Curty, and T. Köhler Pseudomonas aeruginosa virulence analyzed in a Dictyostelium discoideum host system J. Bacteriol. 184 2002 3027 3033
8. B.M. Hasselbring, M.K. Patel, and M.A. Schell Dictyostelium discoideum as a model system for identification of Burkholderia pseudomallei virulence factors Infect. Immun. 79 2011 2079 2088
9. G. Greub, and D. Raoult Microorganisms resistant to free-living amoebae Clin. Microbiol. Rev. 17 2004 413 433
10. T.P. Curtis, W.T. Sloan, and J.W. Scannell Estimating prokaryotic diversity and its limits Proc. Natl. Acad. Sci. USA 99 2002 10494 10499
11. M. Iriti, and F. Faoro Review of innate and specific immunity in plants and animals Mycopathologia 164 2007 57 64
12. I. Botos, D.M. Segal, and D.R. Davies The structural biology of Toll-like receptors Structure 19 2011 447 459
13. G. Chen, O. Zhuchenko, and A. Kuspa Immune-like phagocyte activity in the social amoeba Science 317 2007 678 681
14. A. Walk, J. Callahan, P. Srisawangvong, J. Leuschner, D. Samaroo, D. Cassilly, and M.L. Snyder Lipopolysaccharide enhances bactericidal activity in Dictyostelium discoideum cells Dev. Comp. Immunol. 35 2011 850 856
15. P. Farbrother, C. Wagner, J. Na, B. Tunggal, T. Morio, H. Urushihara, Y. Tanaka, M. Schleicher, M. Steinert, and L. Eichinger Dictyostelium transcriptional host cell response upon infection with Legionella Cell. Microbiol. 8 2006 438 456
16. A. Sillo, G. Bloomfield, A. Balest, A. Balbo, B. Pergolizzi, B. Peracino, J. Skelton, A. Ivens, and S. Bozzaro Genome-wide transcriptional changes induced by phagocytosis or growth on bacteria in Dictyostelium BMC Genomics 9 2008 291
17. S. Carilla-Latorre, J. Calvo-Garrido, G. Bloomfield, J. Skelton, R.R. Kay, A. Ivens, J.L. Martinez, and R. Escalante Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains BMC Microbiol. 8 2008 109
18. M.R. Salton The anatomy of the bacterial surface Bacteriol. Rev. 25 1961 77 99
19. W. Vollmer, D. Blanot, and M.A. de Pedro Peptidoglycan structure and architecture FEMS Microbiol. Rev. 32 2008 149 167
20. P.C. Newell, R.F. Henderson, D. Mosses, and D.I. Ratner Sensitivity to Bacillus subtilis: A novel system for selection of heterozygous diploids of Dictyostelium discoideum J. Gen. Microbiol. 100 1977 207 211
21. J.H. Morrissey, S. Wheeler, and W.F. Loomis New loci in Dictyostelium discoideum determining pigment formation and growth on Bacillus subtilis Genetics 96 1980 115 123
22. M. Benghezal, M.O. Fauvarque, R. Tournebize, R. Froquet, A. Marchetti, E. Bergeret, B. Lardy, G. Klein, P. Sansonetti, S.J. Charette, and P. Cosson Specific host genes required for the killing of Klebsiella bacteria by phagocytes Cell. Microbiol. 8 2006 139 148
23. N. Van Driessche, J. Demsar, E.O. Booth, P. Hill, P. Juvan, B. Zupan, A. Kuspa, and G. Shaulsky Epistasis analysis with global transcriptional phenotypes Nat. Genet. 37 2005 471 477
24. J. Andrä, R. Herbst, and M. Leippe Amoebapores, archaic effector peptides of protozoan origin, are discharged into phagosomes and kill bacteria by permeabilizing their membranes Dev. Comp. Immunol. 27 2003 291 304
25. S. Basu, P. Fey, Y. Pandit, R. Dodson, W.A. Kibbe, and R.L. Chisholm DictyBase 2013: integrating multiple Dictyostelid species Nucleic Acids Res. 41 Database issue 2013 D676 D683
26. I. Müller, N. Subert, H. Otto, R. Herbst, H. Rühling, M. Maniak, and M. Leippe A Dictyostelium mutant with reduced lysozyme levels compensates by increased phagocytic activity J. Biol. Chem. 280 2005 10435 10443
27. L. Eichinger, J.A. Pachebat, G. Glöckner, M.A. Rajandream, R. Sucgang, M. Berriman, J. Song, R. Olsen, K. Szafranski, and Q. Xu The genome of the social amoeba Dictyostelium discoideum Nature 435 2005 43 57
28. T.B. Narita, K. Koide, N. Morita, and T. Saito Dictyostelium hybrid polyketide synthase, SteelyA, produces 4-methyl-5-pentylbenzene-1,3-diol and induces spore maturation FEMS Microbiol. Lett. 319 2011 82 87
29. D.A. Knecht, S.M. Cohen, W.F. Loomis, and H.F. Lodish Developmental regulation of Dictyostelium discoideum actin gene fusions carried on low-copy and high-copy transformation vectors Mol. Cell. Biol. 6 1986 3973 3983
30. C.P. Chia, S. Gomathinayagam, R.J. Schmaltz, and L.K. Smoyer Glycoprotein gp130 of dictyostelium discoideum influences macropinocytosis and adhesion Mol. Biol. Cell 16 2005 2681 2693
31. C.L. Feasley, J.M. Johnson, C.M. West, and C.P. Chia Glycopeptidome of a heavily N-glycosylated cell surface glycoprotein of Dictyostelium implicated in cell adhesion J. Proteome Res. 9 2010 3495 3510
32. H. Komatsuzawa, T. Fujiwara, H. Nishi, S. Yamada, M. Ohara, N. McCallum, B. Berger-Bächi, and M. Sugai The gate controlling cell wall synthesis in Staphylococcus aureus Mol. Microbiol. 53 2004 1221 1231
33. B. Masschalck, and C.W. Michiels Antimicrobial properties of lysozyme in relation to foodborne vegetative bacteria Crit. Rev. Microbiol. 29 2003 191 214
34. W.J. Lennarz Studies on oligosaccharyl transferase in yeast Acta Biochim. Pol. 54 2007 673 677
35. A. Takatsuki, K. Arima, and G. Tamura Tunicamycin, a new antibiotic. I. Isolation and characterization of tunicamycin J. Antibiot. 24 1971 215 223
36. E. Tresse, A. Kosta, C. Giusti, M.F. Luciani, and P. Golstein A UDP-glucose derivative is required for vacuolar autophagic cell death Autophagy 4 2008 680 691
37. P. Cosson, and T. Soldati Eat, kill or die: when amoeba meets bacteria Curr. Opin. Microbiol. 11 2008 271 276
38. H. Yamada, T. Hirano, T. Miyazaki, A. Takatsuki, and G. Tamura Effects of tunicamycin on cell adhesion and biosynthesis of glycoproteins in aggregation-competent cells of Dictyostelium discoideum J. Biochem. 92 1982 399 406
39. A. Casadevall, and L.A. Pirofski Accidental virulence, cryptic pathogenesis, martians, lost hosts, and the pathogenicity of environmental microbes Eukaryot. Cell 6 2007 2169 2174
40. E. Bapteste, H. Brinkmann, J.A. Lee, D.V. Moore, C.W. Sensen, P. Gordon, L. Duruflé, T. Gaasterland, P. Lopez, M. Müller, and H. Philippe The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba Proc. Natl. Acad. Sci. USA 99 2002 1414 1419
41. M. Sussman Cultivation and synchronous morphogenesis of Dictyostelium under controlled experimental conditions Methods Cell Biol. 28 1987 9 29
42. A. Parikh, E.R. Miranda, M. Katoh-Kurasawa, D. Fuller, G. Rot, L. Zagar, T. Curk, R. Sucgang, R. Chen, and B. Zupan Conserved developmental transcriptomes in evolutionarily divergent species Genome Biol. 11 2010 R35
43. B. Langmead, and S.L. Salzberg Fast gapped-read alignment with Bowtie 2 Nat. Methods 9 2012 357 359
44. Warnes, G.R. (2008). gplots: Various R programming tools for plotting data. http://cran.r-project.org/web/packages/gplots/index.html.
45. T.J. Hardcastle, and K.A. Kelly baySeq: empirical Bayesian methods for identifying differential expression in sequence count data BMC Bioinformatics 11 2010 422
46. A. Kuspa Restriction enzyme-mediated integration (REMI) mutagenesis Methods Mol. Biol. 346 2006 201 209
47. R. Suzuki, and H. Shimodaira Pvclust: an R package for assessing the uncertainty in hierarchical clustering Bioinformatics 22 2006 1540 1542
48. P.A. Thomason, D.T. Brazill, and E.C. Cox A series of Dictyostelium expression vectors for recombination cloning Plasmid 56 2006 145 152
49. L. Eichinger, and F. Rivero Dictyostelium discoideum Protocols Volume 346 2006 Humana Press Totowa, NJ