-
1
-
-
77958465418
-
Product-form stationary distributions for deficiency zero chemical reaction networks
-
Anderson, D. F., Craciun, G. and Kurtz, T. G. (2010) Product-form stationary distributions for deficiency zero chemical reaction networks. Bulletin of Mathematical Biology 72 (8) 1947-1970.
-
(2010)
Bulletin of Mathematical Biology
, vol.72
, Issue.8
, pp. 1947-1970
-
-
Anderson, D.F.1
Craciun, G.2
Kurtz, T.G.3
-
2
-
-
80053004921
-
On the statistical thermodynamics of reversible communicating processes
-
Corradini, A., Klin, B. and Ĉrstea, C. (eds.) Springer-Verlag Lecture Notes in Computer Science
-
Bacci, G., Danos, V. and Kammar, O. (2011) On the statistical thermodynamics of reversible communicating processes. In: Corradini, A., Klin, B. and Ĉrstea, C. (eds.) Proceedings 4th International Conference, CALCO 2011. Springer-Verlag Lecture Notes in Computer Science 6859 1-18.
-
(2011)
Proceedings 4th International Conference, CALCO 2011
, vol.6859
, pp. 1-18
-
-
Bacci, G.1
Danos, V.2
Kammar, O.3
-
3
-
-
18944375963
-
Functorial semantics for Petri nets under the individual token philosophy
-
Bruni, R., Meseguer, J., Montanari, U. and Sassone, V. (1999) Functorial semantics for Petri nets under the individual token philosophy. In: Proceedings of CTCS'99.
-
(1999)
Proceedings of CTCS'99
-
-
Bruni, R.1
Meseguer, J.2
Montanari, U.3
Sassone, V.4
-
4
-
-
34548302044
-
Petri net modelling of biological networks
-
Chaouiya, C. (2007) Petri net modelling of biological networks. Briefings in Bioinformatics 8 (4) 210-219.
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.4
, pp. 210-219
-
-
Chaouiya, C.1
-
8
-
-
38149083357
-
Rule-based modelling of cellular signalling
-
Caires, L. and Vasconcelos, V. (eds.)
-
Danos, V., Feret, J., Fontana, W., Harmer, R. and Krivine, J. (2007) Rule-based modelling of cellular signalling. In: Caires, L. and Vasconcelos, V. (eds.) Proceedings CONCUR 2007. Springer-Verlag Lecture Notes in Computer Science 4703 17-41.
-
(2007)
Proceedings CONCUR 2007. Springer-Verlag Lecture Notes in Computer Science
, vol.4703
, pp. 17-41
-
-
Danos, V.1
Feret, J.2
Fontan, W.3
Harmer, R.4
Krivine, J.5
-
9
-
-
47149093382
-
Rule-based modelling, symmetries, refinements
-
Fisher, J. (ed)
-
Danos, V., Feret, J., Fontana, W., Harmer, R. and Krivine, J. (2008a) Rule-based modelling, symmetries, refinements. In: Fisher, J. (ed.) Proceedings FMSB 2008. Springer-Verlag Lecture Notes in Computer Science 5054 103-122.
-
(2008)
Proceedings FMSB 2008. Springer-Verlag Lecture Notes in Computer Science
, vol.5054
, pp. 103-122
-
-
Danos, V.1
Feret, J.2
Fontana, W.3
Harmer, R.4
Krivine, J.5
-
10
-
-
40549119812
-
Abstract interpretation of cellular signalling networks
-
Logozzo, F., Peled, D. and Zuck, L. D. (eds.)
-
Danos, V., Feret, J., Fontana, W. and Krivine, J. (2008b) Abstract interpretation of cellular signalling networks. In: Logozzo, F., Peled, D. and Zuck, L. D. (eds.) Proceedings VMCAI 2008. Springer-Verlag Lecture Notes in Computer Science 4905 83-97.
-
(2008)
Proceedings VMCAI 2008. Springer-Verlag Lecture Notes in Computer Science
, vol.4905
, pp. 83-97
-
-
Danos, V.1
Feret, J.2
Fontana, W.3
Krivine, J.4
-
11
-
-
78449272958
-
Abstracting the differential semantics of rule-based models: Exact and automated model reduction
-
Danos, V., Feret, J., Fontana, W., Harmer, R. and Krivine, J. (2010) Abstracting the differential semantics of rule-based models: Exact and automated model reduction. In: Proceedings LICS 2010, IEEE Computer Society 362-381.
-
(2010)
Proceedings LICS 2010 IEEE Computer Society
, pp. 362-381
-
-
Danos, V.1
Feret, J.2
Fontana, W.3
Harmer, R.4
Krivine, J.5
-
12
-
-
63449139977
-
Differential equation approximations for Markov chains
-
Darling, R. and Norris, J. R. (2008) Differential equation approximations for Markov chains. Probability surveys 5 37-79.
-
(2008)
Probability Surveys
, vol.5
, pp. 37-79
-
-
Darling, R.1
Norris, J.R.2
-
13
-
-
70349312939
-
The kappa-lattice: Decidability boundaries for qualitative analysis in biological languages
-
Degano, P. and Gorrieri, R. (eds.)
-
Delzanno, G., Giusto, C. D., Gabbrielli, M., Laneve, C. and Zavattaro, G. (2009) The Kappa-Lattice: Decidability Boundaries for Qualitative Analysis in Biological Languages. In: Degano, P. and Gorrieri, R. (eds.) Computational Methods in Systems Biology, Proceedings CMSB 2009. Springer-Verlag Lecture Notes in Computer Science 5688 158-172.
-
(2009)
Computational Methods in Systems Biology, Proceedings CMSB 2009. Springer-Verlag Lecture Notes in Computer Science
, vol.5688
, pp. 158-172
-
-
Delzanno, G.1
Giusto, C.D.2
Gabbrielli, M.3
Laneve, C.4
Zavattaro, G.5
-
14
-
-
0037544463
-
Continuous stochastic logic characterizes bisimulation of continuous-time Markov processes
-
Desharnais, J. and Panangaden, P. (2003) Continuous stochastic logic characterizes bisimulation of continuous-time Markov processes. Journal of Logic and Algebraic Programming 56 (1-2) 99-115.
-
(2003)
Journal of Logic and Algebraic Programming
, vol.56
, Issue.1-2
, pp. 99-115
-
-
Desharnais, J.1
Panangaden, P.2
-
16
-
-
62349110806
-
Thermodynamic constraints in kinetic modeling: Thermodynamic-kinetic modeling in comparison to other approaches
-
Ederer, M. and Gilles, E.-D. (2008) Thermodynamic constraints in kinetic modeling: thermodynamic-kinetic modeling in comparison to other approaches. Engineering in Life Sciences 8 (5) 467-476.
-
(2008)
Engineering in Life Sciences
, vol.8
, Issue.5
, pp. 467-476
-
-
Ederer, M.1
Gilles, E.-D.2
-
17
-
-
33947677189
-
Thermodynamically feasible kinetic models of reaction networks
-
Ederer, M. and Gilles, E.-D. (2007) Thermodynamically feasible kinetic models of reaction networks. Biophysical Journal 92 (6) 1846-1857.
-
(2007)
Biophysical Journal
, vol.92
, Issue.6
, pp. 1846-1857
-
-
Ederer, M.1
Gilles, E.-D.2
-
18
-
-
35048866541
-
Adhesive high-level replacement categories and systems
-
Ehrig, H., Engels, G., Parisi-Presicce, F. and Rozenberg, G. (eds.)
-
Ehrig, H., Habel, A., Padberg, J. and Prange, U. (2004) Adhesive high-level replacement categories and systems. In: Ehrig, H., Engels, G., Parisi-Presicce, F. and Rozenberg, G. (eds.) Proceedings Second International Conference, ICGT 2004. Springer-Verlag Lecture Notes in Computer Science 3256 144-160.
-
(2004)
Proceedings Second International Conference, ICGT 2004. Springer-Verlag Lecture Notes in Computer Science
, vol.3256
, pp. 144-160
-
-
Ehrig, H.1
Habel, A.2
Padberg, J.3
Prange, U.4
-
19
-
-
70849133696
-
Agent-based computational models and generative social science
-
Epstein, J. M. (1999) Agent-based computational models and generative social science. Complexity 4 (5) 41-60.
-
(1999)
Complexity
, vol.4
, Issue.5
, pp. 41-60
-
-
Epstein, J.M.1
-
21
-
-
0023531427
-
Chemical reaction network structure and the stability of complex isothermal reactors-I the deficiency zero and deficiency one theorems
-
Feinberg, M. (1987) Chemical reaction network structure and the stability of complex isothermal reactors-I. The deficiency zero and deficiency one theorems. Chemical Engineering Science 42 (10) 2229-2268.
-
(1987)
Chemical Engineering Science
, vol.42
, Issue.10
, pp. 2229-2268
-
-
Feinberg, M.1
-
22
-
-
66149151035
-
Internal coarse-graining of molecular systems
-
Feret, J., Danos, V., Krivine, J., Harmer, R. and Fontana, W. (2009) Internal coarse-graining of molecular systems. Proceedings of the National Academy of Sciences 106 (16) 6453.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, Issue.16
, pp. 6453
-
-
Feret, J.1
Danos, V.2
Krivine, J.3
Harmer, R.4
Fontan, W.5
-
23
-
-
0032499741
-
Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets
-
Goss, P. J. E. and Peccoud, J. (1998) Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets. Proceedings of the National Academy of Sciences 95 (12) 6750.
-
(1998)
Proceedings of the National Academy of Sciences
, vol.95
, Issue.12
, pp. 6750
-
-
Goss, P.J.E.1
Peccoud, J.2
-
24
-
-
78649413794
-
Intrinsic Information carriers in combinatorial dynamical systems
-
Harmer, R., Danos, V., Feret, J., Krivine, J. and Fontana, W. (2010) Intrinsic Information carriers in combinatorial dynamical systems. Chaos 2950 (3) 037108.
-
(2010)
Chaos
, vol.2950
, Issue.3
, pp. 037108
-
-
Harmer, R.1
Danos, V.2
Feret, J.3
Krivine, J.4
Fontana, W.5
-
26
-
-
34548803596
-
Stochastic approach to molecular interactions and computational theory of metabolic and genetic regulations
-
Kimura, H., Okano, H. and Tanaka, R. J. (2007) Stochastic approach to molecular interactions and computational theory of metabolic and genetic regulations. Journal of Theoretical Biology 248 (4) 590-607.
-
(2007)
Journal of Theoretical Biology
, vol.248
, Issue.4
, pp. 590-607
-
-
Kimura, H.1
Okano, H.2
Tanaka, R.J.3
-
27
-
-
33847664593
-
Adhesive categories
-
Walukiewicz, I. (ed)
-
Lack, S. and Sobocinski, P. (2004) Adhesive categories. In: Walukiewicz, I. (ed.) Foundations of Software Science and Computation Structures, Proceedings 7th International Conference, FOSSACS 2004. Springer-Verlag Lecture Notes in Computer Science 2987 273-288.
-
(2004)
Foundations of Software Science and Computation Structures, Proceedings 7th International Conference, FOSSACS 2004. Springer-Verlag Lecture Notes in Computer Science
, vol.2987
, pp. 273-288
-
-
Lack, S.1
Sobocinski, P.2
-
30
-
-
0003781238
-
-
Cambridge University Press
-
Norris, J. R. (1998) Markov chains, Cambridge University Press.
-
(1998)
Markov Chains
-
-
Norris, J.R.1
-
31
-
-
78649682240
-
Scalable rule-based modelling of allosteric proteins and biochemical networks
-
Ollivier, J. F., Shahrezaei, V. and Swain, P. S. (2010) Scalable Rule-Based Modelling of Allosteric Proteins and Biochemical Networks. PLOS Computational Biology 6 (11) 6750.
-
(2010)
PLOS Computational Biology
, vol.6
, Issue.11
, pp. 6750
-
-
Ollivier, J.F.1
Shahrezaei, V.2
Swain, P.S.3
-
33
-
-
0035235039
-
Representation and simulation of biochemical processes using the π-calculus process algebra
-
Regev, A., Silverman, W. and Shapiro, E. (2001) Representation and simulation of biochemical processes using the π-calculus process algebra. In: Pacific symposium on biocomputing 6 459-470.
-
(2001)
Pacific Symposium on Biocomputing
, vol.6
, pp. 459-470
-
-
Regev, A.1
Silverman, W.2
Shapiro, E.3
-
34
-
-
0010538827
-
A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation
-
Schuster, S. and Schuster, R. (1989) A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation. Journal of Mathematical Chemistry 3 (1) 25-42.
-
(1989)
Journal of Mathematical Chemistry
, vol.3
, Issue.1
, pp. 25-42
-
-
Schuster, S.1
Schuster, R.2
-
35
-
-
33746662922
-
On imposing detailed balance in complex reaction mechanisms
-
Yang, J., Bruno, W. J., Hlavacek, W. S. and Pearson, J. E. (2008) On imposing detailed balance in complex reaction mechanisms. Biophysical Journal 91 (3) 1136-1141.
-
(2008)
Biophysical Journal
, vol.91
, Issue.3
, pp. 1136-1141
-
-
Yang, J.1
Bruno, W.J.2
Hlavacek, W.S.3
Pearson, J.E.4
|