메뉴 건너뛰기




Volumn 5054 LNBI, Issue , 2008, Pages 103-122

Rule-based modelling, symmetries, refinements

Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR SIGNALLING; HEIDELBERG (CO); INFINITE-DIMENSIONAL DYNAMICAL SYSTEMS; INTERNATIONAL (CO); MASS ACTION PRINCIPLE; RULE REFINEMENT; RULE-BASED; STOCHASTIC GRAPHS; SYSTEMS BIOLOGY;

EID: 47149093382     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-68413-8_8     Document Type: Conference Paper
Times cited : (79)

References (21)
  • 2
    • 41349085965 scopus 로고    scopus 로고
    • General formalism for inhomogeneous random graphs
    • Söderberg, B.: General formalism for inhomogeneous random graphs. Physical Review E 66(6), 66121 (2002)
    • (2002) Physical Review E , vol.66 , Issue.6 , pp. 66121
    • Söderberg, B.1
  • 3
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81, 2340-2361 (1977)
    • (1977) J. Phys. Chem , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 4
    • 40549119812 scopus 로고    scopus 로고
    • Abstract interpretation of cellular signalling networks
    • Logozzo, F, et al, eds, VMCAI 2008, Springer, Heidelberg
    • Danos, V., Feret, J., Fontana, W., Krivine, J.: Abstract interpretation of cellular signalling networks. In: Logozzo, F., et al. (eds.) VMCAI 2008. LNCS, vol. 4905, pp. 83-97. Springer, Heidelberg (2008)
    • (2008) LNCS , vol.4905 , pp. 83-97
    • Danos, V.1    Feret, J.2    Fontana, W.3    Krivine, J.4
  • 5
    • 38149064616 scopus 로고    scopus 로고
    • Danos, V., Feret, J., Fontana, W., Krivine, J.: Scalable simulation of cellular signaling networks. In: Shao, Z. (ed.) APLAS 2007. LNCS, 4807, pp. 139-157. Springer, Heidelberg (2007)
    • Danos, V., Feret, J., Fontana, W., Krivine, J.: Scalable simulation of cellular signaling networks. In: Shao, Z. (ed.) APLAS 2007. LNCS, vol. 4807, pp. 139-157. Springer, Heidelberg (2007)
  • 6
    • 38149083357 scopus 로고    scopus 로고
    • Rule-based modelling of cellular signalling
    • Caires, L, Vasconcelos, V.T, eds, CONCUR, Springer, Heidelberg
    • Danos, V., Feret, J., Fontana, W., Harmer, R., Krivine, J.: Rule-based modelling of cellular signalling. In: Caires, L., Vasconcelos, V.T. (eds.) CONCUR. LNCS, vol. 4703. Springer, Heidelberg (2007)
    • (2007) LNCS , vol.4703
    • Danos, V.1    Feret, J.2    Fontana, W.3    Harmer, R.4    Krivine, J.5
  • 7
    • 71549155391 scopus 로고    scopus 로고
    • Agile modelling of cellular signalling
    • Danos, V.: Agile modelling of cellular signalling. In: Proceedings of ICCMSE (2007)
    • (2007) Proceedings of ICCMSE
    • Danos, V.1
  • 8
    • 32044469862 scopus 로고    scopus 로고
    • A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity
    • Blinov, M.L., Faeder, J.R., Goldstein, B., Hlavacek, W.S.: A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity. BioSystems 83, 136-151 (2006)
    • (2006) BioSystems , vol.83 , pp. 136-151
    • Blinov, M.L.1    Faeder, J.R.2    Goldstein, B.3    Hlavacek, W.S.4
  • 10
    • 85083135594 scopus 로고    scopus 로고
    • Graph theory for rule-based modeling of biochemical networks
    • Abadi, M, de Alfaro, L, eds, CONCUR 2005, Springer, Heidelberg
    • Blinov, M.L., Yang, J., Faeder, J.R., Hlavacek, W.S.: Graph theory for rule-based modeling of biochemical networks. In: Abadi, M., de Alfaro, L. (eds.) CONCUR 2005. LNCS, vol. 3653. Springer, Heidelberg (2005)
    • (2005) LNCS , vol.3653
    • Blinov, M.L.1    Yang, J.2    Faeder, J.R.3    Hlavacek, W.S.4
  • 11
    • 21644485536 scopus 로고    scopus 로고
    • Combinatorial complexity and dynamical restriction of network flows in signal transduction
    • Faeder, J.R., Blinov, M.L., Goldstein, B., Hlavacek, W.S.: Combinatorial complexity and dynamical restriction of network flows in signal transduction. Systems Biology 2(1), 5-15 (2005)
    • (2005) Systems Biology , vol.2 , Issue.1 , pp. 5-15
    • Faeder, J.R.1    Blinov, M.L.2    Goldstein, B.3    Hlavacek, W.S.4
  • 12
    • 0035235039 scopus 로고    scopus 로고
    • Representation and simulation of biochemical processes using the π-calculus process algebra
    • Altman, R.B, Dunker, A.K, Hunter, L, Klein, T.E, eds, World Scientific Press, Singapore
    • Regev, A., Silverman, W., Shapiro, E.: Representation and simulation of biochemical processes using the π-calculus process algebra. In: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E. (eds.) Pacific Symposium on Biocomputing, vol. 6, pp. 459-470. World Scientific Press, Singapore (2001)
    • (2001) Pacific Symposium on Biocomputing , vol.6 , pp. 459-470
    • Regev, A.1    Silverman, W.2    Shapiro, E.3
  • 13
    • 0035888407 scopus 로고    scopus 로고
    • Priami, C.., Regev, A., Shapiro, E., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Information Processing Letters (2001)
    • Priami, C.., Regev, A., Shapiro, E., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Information Processing Letters (2001)
  • 14
    • 0037179670 scopus 로고    scopus 로고
    • Cells as computation
    • September
    • Regev, A., Shapiro, E.: Cells as computation. Nature 419 (September 2002)
    • (2002) Nature , vol.419
    • Regev, A.1    Shapiro, E.2
  • 15
    • 26444448026 scopus 로고    scopus 로고
    • Priami, C., Quaglia, P.: Beta binders for biological interactions. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), 3082, pp. 20-33. Springer, Heidelberg (2005)
    • Priami, C., Quaglia, P.: Beta binders for biological interactions. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), vol. 3082, pp. 20-33. Springer, Heidelberg (2005)
  • 16
    • 34447280821 scopus 로고    scopus 로고
    • Formal molecular biology done in CCS
    • Proceedings of BIO-CONCUR, Marseille, France, Elsevier, Amsterdam
    • Danos, V., Krivine, J.: Formal molecular biology done in CCS. In: Proceedings of BIO-CONCUR 2003, Marseille, France. Electronic Notes in Theoretical Computer Science, vol. 180, pp. 31-49. Elsevier, Amsterdam (2003)
    • (2003) Electronic Notes in Theoretical Computer Science , vol.180 , pp. 31-49
    • Danos, V.1    Krivine, J.2
  • 18
  • 19
    • 38549120134 scopus 로고    scopus 로고
    • Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA
    • Priami, C, Ingólfsdóttir, A, Mishra, B, Riis Nielson, H, eds, Springer, Heidelberg
    • Calder, M., Gilmore, S., Hillston, J.: Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA. In: Priami, C., Ingólfsdóttir, A., Mishra, B., Riis Nielson, H. (eds.) Transactions on Computational Systems Biology VII. LNCS (LNBI), vol. 4230, pp. 1-23. Springer, Heidelberg (2006)
    • (2006) Transactions on Computational Systems Biology VII. LNCS (LNBI) , vol.4230 , pp. 1-23
    • Calder, M.1    Gilmore, S.2    Hillston, J.3
  • 20
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • Gillespie, D.T.: A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comp. Phys. 22, 403-434 (1976)
    • (1976) J. Comp. Phys , vol.22 , pp. 403-434
    • Gillespie, D.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.