-
1
-
-
29144435996
-
Computational modelling of the receptor tyrosine kinase activated MAPK pathway
-
Orton, R.J., Sturm, O.E., Vyshemirsky, V., Calder, M., Gilbert, D.R., Kolch, W.: Computational modelling of the receptor tyrosine kinase activated MAPK pathway. Biochemical Journal 392(2), 249-261 (2005)
-
(2005)
Biochemical Journal
, vol.392
, Issue.2
, pp. 249-261
-
-
Orton, R.J.1
Sturm, O.E.2
Vyshemirsky, V.3
Calder, M.4
Gilbert, D.R.5
Kolch, W.6
-
2
-
-
41349085965
-
General formalism for inhomogeneous random graphs
-
Söderberg, B.: General formalism for inhomogeneous random graphs. Physical Review E 66(6), 66121 (2002)
-
(2002)
Physical Review E
, vol.66
, Issue.6
, pp. 66121
-
-
Söderberg, B.1
-
3
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81, 2340-2361 (1977)
-
(1977)
J. Phys. Chem
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
4
-
-
40549119812
-
Abstract interpretation of cellular signalling networks
-
Logozzo, F, et al, eds, VMCAI 2008, Springer, Heidelberg
-
Danos, V., Feret, J., Fontana, W., Krivine, J.: Abstract interpretation of cellular signalling networks. In: Logozzo, F., et al. (eds.) VMCAI 2008. LNCS, vol. 4905, pp. 83-97. Springer, Heidelberg (2008)
-
(2008)
LNCS
, vol.4905
, pp. 83-97
-
-
Danos, V.1
Feret, J.2
Fontana, W.3
Krivine, J.4
-
5
-
-
38149064616
-
-
Danos, V., Feret, J., Fontana, W., Krivine, J.: Scalable simulation of cellular signaling networks. In: Shao, Z. (ed.) APLAS 2007. LNCS, 4807, pp. 139-157. Springer, Heidelberg (2007)
-
Danos, V., Feret, J., Fontana, W., Krivine, J.: Scalable simulation of cellular signaling networks. In: Shao, Z. (ed.) APLAS 2007. LNCS, vol. 4807, pp. 139-157. Springer, Heidelberg (2007)
-
-
-
-
6
-
-
38149083357
-
Rule-based modelling of cellular signalling
-
Caires, L, Vasconcelos, V.T, eds, CONCUR, Springer, Heidelberg
-
Danos, V., Feret, J., Fontana, W., Harmer, R., Krivine, J.: Rule-based modelling of cellular signalling. In: Caires, L., Vasconcelos, V.T. (eds.) CONCUR. LNCS, vol. 4703. Springer, Heidelberg (2007)
-
(2007)
LNCS
, vol.4703
-
-
Danos, V.1
Feret, J.2
Fontana, W.3
Harmer, R.4
Krivine, J.5
-
7
-
-
71549155391
-
Agile modelling of cellular signalling
-
Danos, V.: Agile modelling of cellular signalling. In: Proceedings of ICCMSE (2007)
-
(2007)
Proceedings of ICCMSE
-
-
Danos, V.1
-
8
-
-
32044469862
-
A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity
-
Blinov, M.L., Faeder, J.R., Goldstein, B., Hlavacek, W.S.: A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity. BioSystems 83, 136-151 (2006)
-
(2006)
BioSystems
, vol.83
, pp. 136-151
-
-
Blinov, M.L.1
Faeder, J.R.2
Goldstein, B.3
Hlavacek, W.S.4
-
9
-
-
33747366698
-
Rules for Modeling Signal-Transduction Systems
-
Hlavacek, W.S., Faeder, J.R., Blinov, M.L., Posner, R.G., Hucka, M., Fontana, W.: Rules for Modeling Signal-Transduction Systems. Science's STKE 2006(344) (2006)
-
(2006)
Science's STKE 2006
, vol.344
-
-
Hlavacek, W.S.1
Faeder, J.R.2
Blinov, M.L.3
Posner, R.G.4
Hucka, M.5
Fontana, W.6
-
10
-
-
85083135594
-
Graph theory for rule-based modeling of biochemical networks
-
Abadi, M, de Alfaro, L, eds, CONCUR 2005, Springer, Heidelberg
-
Blinov, M.L., Yang, J., Faeder, J.R., Hlavacek, W.S.: Graph theory for rule-based modeling of biochemical networks. In: Abadi, M., de Alfaro, L. (eds.) CONCUR 2005. LNCS, vol. 3653. Springer, Heidelberg (2005)
-
(2005)
LNCS
, vol.3653
-
-
Blinov, M.L.1
Yang, J.2
Faeder, J.R.3
Hlavacek, W.S.4
-
11
-
-
21644485536
-
Combinatorial complexity and dynamical restriction of network flows in signal transduction
-
Faeder, J.R., Blinov, M.L., Goldstein, B., Hlavacek, W.S.: Combinatorial complexity and dynamical restriction of network flows in signal transduction. Systems Biology 2(1), 5-15 (2005)
-
(2005)
Systems Biology
, vol.2
, Issue.1
, pp. 5-15
-
-
Faeder, J.R.1
Blinov, M.L.2
Goldstein, B.3
Hlavacek, W.S.4
-
12
-
-
0035235039
-
Representation and simulation of biochemical processes using the π-calculus process algebra
-
Altman, R.B, Dunker, A.K, Hunter, L, Klein, T.E, eds, World Scientific Press, Singapore
-
Regev, A., Silverman, W., Shapiro, E.: Representation and simulation of biochemical processes using the π-calculus process algebra. In: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E. (eds.) Pacific Symposium on Biocomputing, vol. 6, pp. 459-470. World Scientific Press, Singapore (2001)
-
(2001)
Pacific Symposium on Biocomputing
, vol.6
, pp. 459-470
-
-
Regev, A.1
Silverman, W.2
Shapiro, E.3
-
13
-
-
0035888407
-
-
Priami, C.., Regev, A., Shapiro, E., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Information Processing Letters (2001)
-
Priami, C.., Regev, A., Shapiro, E., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Information Processing Letters (2001)
-
-
-
-
14
-
-
0037179670
-
Cells as computation
-
September
-
Regev, A., Shapiro, E.: Cells as computation. Nature 419 (September 2002)
-
(2002)
Nature
, vol.419
-
-
Regev, A.1
Shapiro, E.2
-
15
-
-
26444448026
-
-
Priami, C., Quaglia, P.: Beta binders for biological interactions. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), 3082, pp. 20-33. Springer, Heidelberg (2005)
-
Priami, C., Quaglia, P.: Beta binders for biological interactions. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), vol. 3082, pp. 20-33. Springer, Heidelberg (2005)
-
-
-
-
16
-
-
34447280821
-
Formal molecular biology done in CCS
-
Proceedings of BIO-CONCUR, Marseille, France, Elsevier, Amsterdam
-
Danos, V., Krivine, J.: Formal molecular biology done in CCS. In: Proceedings of BIO-CONCUR 2003, Marseille, France. Electronic Notes in Theoretical Computer Science, vol. 180, pp. 31-49. Elsevier, Amsterdam (2003)
-
(2003)
Electronic Notes in Theoretical Computer Science
, vol.180
, pp. 31-49
-
-
Danos, V.1
Krivine, J.2
-
17
-
-
4444383325
-
BioAmbients: An abstraction for biological compartments
-
Regev, A., Panina, E.M., Silverman, W., Cardelli, L., Shapiro, E.: BioAmbients: an abstraction for biological compartments. Theoretical Computer Science 325(1), 141-167 (2004)
-
(2004)
Theoretical Computer Science
, vol.325
, Issue.1
, pp. 141-167
-
-
Regev, A.1
Panina, E.M.2
Silverman, W.3
Cardelli, L.4
Shapiro, E.5
-
19
-
-
38549120134
-
Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA
-
Priami, C, Ingólfsdóttir, A, Mishra, B, Riis Nielson, H, eds, Springer, Heidelberg
-
Calder, M., Gilmore, S., Hillston, J.: Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA. In: Priami, C., Ingólfsdóttir, A., Mishra, B., Riis Nielson, H. (eds.) Transactions on Computational Systems Biology VII. LNCS (LNBI), vol. 4230, pp. 1-23. Springer, Heidelberg (2006)
-
(2006)
Transactions on Computational Systems Biology VII. LNCS (LNBI)
, vol.4230
, pp. 1-23
-
-
Calder, M.1
Gilmore, S.2
Hillston, J.3
-
20
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie, D.T.: A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comp. Phys. 22, 403-434 (1976)
-
(1976)
J. Comp. Phys
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
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