메뉴 건너뛰기




Volumn 5307 LNBI, Issue , 2008, Pages 288-307

Compositional definitions of minimal flows in Petri nets

Author keywords

Minimal flows; Minimal invariants; Modularity; Petri nets; The calculus of biochemical systems

Indexed keywords

BIOCHEMICAL SYSTEMS; MINIMAL FLOWS; MINIMAL INVARIANTS; MODULAR PETRI NETS; MODULARITY; THE CALCULUS OF BIOCHEMICAL SYSTEMS;

EID: 57049127670     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-88562-7_21     Document Type: Conference Paper
Times cited : (10)

References (31)
  • 1
    • 0024645936 scopus 로고
    • Petri nets: Properties, analysis and applications
    • Murata, T.: Petri nets: properties, analysis and applications. Proc. IEEE 77(4), 541-580 (1989)
    • (1989) Proc. IEEE , vol.77 , Issue.4 , pp. 541-580
    • Murata, T.1
  • 2
    • 0032499741 scopus 로고    scopus 로고
    • Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets
    • Goss, P.J.E., Peccoud, J.: Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets. PNAS 95(12), 6750-6755 (1998)
    • (1998) PNAS , vol.95 , Issue.12 , pp. 6750-6755
    • Goss, P.J.E.1    Peccoud, J.2
  • 3
    • 14544306029 scopus 로고    scopus 로고
    • Using Petri net tools to study properties and dynamics of biological systems
    • Peleg, M., et al.: Using Petri net tools to study properties and dynamics of biological systems. Journal of the American Medical Informatics Association 12(2), 181-199 (2005)
    • (2005) Journal of the American Medical Informatics Association , vol.12 , Issue.2 , pp. 181-199
    • Peleg, M.1
  • 4
    • 21644439156 scopus 로고    scopus 로고
    • Modeling and simulation of molecular biology systems using Petri nets: Modeling goals of various approaches
    • Hardy, S., Robillard, P.N.: Modeling and simulation of molecular biology systems using Petri nets: Modeling goals of various approaches. J. Bioinformatics and Computational Biology 2(4), 619-638 (2004)
    • (2004) J. Bioinformatics and Computational Biology , vol.2 , Issue.4 , pp. 619-638
    • Hardy, S.1    Robillard, P.N.2
  • 5
    • 0027902978 scopus 로고
    • Petri net representation in metabolic pathways
    • Reddy, V.N., et al.: Petri net representation in metabolic pathways. In: Proc. Int. Conf. Intell. Syst. Mol. Biol., pp. 328-336 (1993)
    • (1993) Proc. Int. Conf. Intell. Syst. Mol. Biol , pp. 328-336
    • Reddy, V.N.1
  • 6
    • 0345602990 scopus 로고    scopus 로고
    • Topological analysis of metabolic networks based on Petri net theory
    • Zevedei-Oancea, Schuster, S.: Topological analysis of metabolic networks based on Petri net theory. Silico. Biol. 3, 323-345 (2003)
    • (2003) Silico. Biol , vol.3 , pp. 323-345
    • Zevedei-Oancea, S.S.1
  • 8
    • 84896689115 scopus 로고    scopus 로고
    • Executable Petri net models for the analysis of metabolic pathways
    • Genrich, H., et al.: Executable Petri net models for the analysis of metabolic pathways. J. STTT 3(4), 394-404 (2001)
    • (2001) J. STTT , vol.3 , Issue.4 , pp. 394-404
    • Genrich, H.1
  • 9
    • 0345096675 scopus 로고    scopus 로고
    • Steady state analysis of metabolic pathways using Petri nets
    • Voss, K., et al.: Steady state analysis of metabolic pathways using Petri nets. Silico. Biol. 3 (2003)
    • (2003) Silico. Biol , vol.3
    • Voss, K.1
  • 10
    • 27544485048 scopus 로고    scopus 로고
    • Petri net based model validation in systems biology
    • Cortadella, J, Reisig, W, eds, ICATPN 2004, Springer, Heidelberg
    • Heiner, M., Koch, I.: Petri net based model validation in systems biology. In: Cortadella, J., Reisig, W. (eds.) ICATPN 2004. LNCS, vol. 3099, pp. 216-237. Springer, Heidelberg (2004)
    • (2004) LNCS , vol.3099 , pp. 216-237
    • Heiner, M.1    Koch, I.2
  • 11
    • 33845417184 scopus 로고    scopus 로고
    • Application of Petri net based analysis techniques to signal transduction pathways
    • Sackmann, A., et al.: Application of Petri net based analysis techniques to signal transduction pathways. BMC Bioinformatics 7(482) (2006)
    • (2006) BMC Bioinformatics , vol.7 , Issue.482
    • Sackmann, A.1
  • 12
    • 33644817463 scopus 로고    scopus 로고
    • Colored Petri net modeling and simulation of signal transduction pathways
    • Lee, D.Y., et al.: Colored Petri net modeling and simulation of signal transduction pathways. Metab. Eng. 8(2), 112-122 (2005)
    • (2005) Metab. Eng , vol.8 , Issue.2 , pp. 112-122
    • Lee, D.Y.1
  • 13
    • 45749112203 scopus 로고    scopus 로고
    • Heiner, M., et al.: Petri nets for systems and synthetic biology. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, 5016, pp. 215-264. Springer, Heidelberg (2008)
    • Heiner, M., et al.: Petri nets for systems and synthetic biology. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, vol. 5016, pp. 215-264. Springer, Heidelberg (2008)
  • 15
    • 0033648431 scopus 로고    scopus 로고
    • Hybrid Petri net representation of gene regulatory network
    • Matsuno, H., et al.: Hybrid Petri net representation of gene regulatory network. In: Pacific Symposium on Biocomputing, vol. 5, pp. 341-352 (2000)
    • (2000) Pacific Symposium on Biocomputing , vol.5 , pp. 341-352
    • Matsuno, H.1
  • 16
    • 33847304166 scopus 로고    scopus 로고
    • Qualitatively modelling and analysing genetic regulatory networks: A Petri net approach
    • Steggles, L.J., et al.: Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach. Bioinformatics 23(3), 336-343 (2007)
    • (2007) Bioinformatics , vol.23 , Issue.3 , pp. 336-343
    • Steggles, L.J.1
  • 17
    • 47849126239 scopus 로고    scopus 로고
    • Gilbert, D., et al.: A case study in model-driven synthetic biology. In: Biologicallyinspired cooperative computing. IFIP International Federation for Information Processing, 268, pp. 163-175. Springer, Heidelberg (2008)
    • Gilbert, D., et al.: A case study in model-driven synthetic biology. In: Biologicallyinspired cooperative computing. IFIP International Federation for Information Processing, vol. 268, pp. 163-175. Springer, Heidelberg (2008)
  • 19
    • 57049124298 scopus 로고    scopus 로고
    • A language for biochemical systems
    • Heiner, M, Uhrmacher, A.M, eds, Proc. CMSB, Springer, Heidelberg
    • Pedersen, M., Plotkin, G.: A language for biochemical systems. In: Heiner, M., Uhrmacher, A.M. (eds.) Proc. CMSB. LNCS. Springer, Heidelberg (2008)
    • (2008) LNCS
    • Pedersen, M.1    Plotkin, G.2
  • 20
    • 4444272353 scopus 로고    scopus 로고
    • Modelling the dynamics of the yeast pheromone pathway
    • Kofahl. B., Klipp, E.: Modelling the dynamics of the yeast pheromone pathway. Yeast 21(10), 831-850 (2004)
    • (2004) Yeast , vol.21 , Issue.10 , pp. 831-850
    • Kofahl, B.1    Klipp, E.2
  • 22
    • 0034064689 scopus 로고    scopus 로고
    • A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
    • Schuster, S., et al.: A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nature Biotechnology 18, 326-332 (2000)
    • (2000) Nature Biotechnology , vol.18 , pp. 326-332
    • Schuster, S.1
  • 24
    • 57049156136 scopus 로고    scopus 로고
    • Compositional definitions of minimal flows in Petri nets
    • Technical report, University of Edinburgh
    • Pedersen, M.: Compositional definitions of minimal flows in Petri nets. Technical report, University of Edinburgh (2008), http://www.inf.ed.ac.uk/ publications/report/1269.html
    • (2008)
    • Pedersen, M.1
  • 28
    • 0031351778 scopus 로고    scopus 로고
    • A decentralized approach for computing invariants in large scale and interconnected Petri nets
    • Man, and Cybernetics
    • Bourjij, A., et al.: A decentralized approach for computing invariants in large scale and interconnected Petri nets. In: Proc. IEEE International Conference on Systems, Man, and Cybernetics, vol. 2, pp. 1741-1746 (1997)
    • (1997) Proc. IEEE International Conference on Systems , vol.2 , pp. 1741-1746
    • Bourjij, A.1
  • 30


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.