-
1
-
-
34547982039
-
MADS-box gene family in rice: Genome-wide identification, organization and expression profiling during reproductive develop ment and stress
-
Arora, R., Agarwal, P., Ray, S., Singh, A.K., Singh, V.P., Tyagi, A.K. et al. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive develop ment and stress. BMC Genomics 8: 242.
-
(2007)
BMC Genomics
, vol.8
, pp. 242
-
-
Arora, R.1
Agarwal, P.2
Ray, S.3
Singh, A.K.4
Singh, V.P.5
Tyagi, A.K.6
-
2
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B (Methodol.) 57: 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B (Methodol.)
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
3
-
-
57749111824
-
Comparative transcriptomics of Arabidopsis sperm cells
-
Borges, F., Gomes, G., Gardner, R., Moreno, N., McCormick, S., Feijo, J.A. et al. (2008) Comparative transcriptomics of Arabidopsis sperm cells. Plant Physiol. 148: 1168-1181.
-
(2008)
Plant Physiol.
, vol.148
, pp. 1168-1181
-
-
Borges, F.1
Gomes, G.2
Gardner, R.3
Moreno, N.4
McCormick, S.5
Feijo, J.A.6
-
4
-
-
0345501598
-
DNA modification of a maize transposable element correlates with loss of activity
-
Chandler, V.L. and Walbot, V. (1986) DNA modification of a maize transposable element correlates with loss of activity. Proc. Natl Acad. Sci. USA 83: 1767-1771.
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 1767-1771
-
-
Chandler, V.L.1
Walbot, V.2
-
5
-
-
67649982919
-
Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice
-
Chang, L., Ma, H. and Xue, H.W. (2009) Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice. Cell Res. 19: 768-782.
-
(2009)
Cell Res.
, vol.19
, pp. 768-782
-
-
Chang, L.1
Ma, H.2
Xue, H.W.3
-
6
-
-
0030998035
-
Megagametogenesis in Arabidopsis wild type and the Gf mutant
-
Christensen, C.A., King, E.J., Jordan, J.R. and Drews, G.N. (1997) Megagametogenesis in Arabidopsis wild type and the Gf mutant. Sex. Plant Reprod. 10: 49-64.
-
(1997)
Sex. Plant Reprod.
, vol.10
, pp. 49-64
-
-
Christensen, C.A.1
King, E.J.2
Jordan, J.R.3
Drews, G.N.4
-
7
-
-
47849085622
-
The roles of plant dsRNA-binding proteins in RNAi-like pathways
-
Curtin, S.J., Watson, J.M., Smith, N.A., Eamens, A.L., Blanchard, C.L. and Waterhouse, P.M. (2008) The roles of plant dsRNA-binding proteins in RNAi-like pathways. FEBS Lett 582: 2753-2760.
-
(2008)
FEBS Lett
, vol.582
, pp. 2753-2760
-
-
Curtin, S.J.1
Watson, J.M.2
Smith, N.A.3
Eamens, A.L.4
Blanchard, C.L.5
Waterhouse, P.M.6
-
8
-
-
34848926843
-
OsDMC1 is required for homologous pairing in Oryza sativa
-
Deng, Z.Y. and Wang, T. (2007) OsDMC1 is required for homologous pairing in Oryza sativa. Plant Mol. Biol. 65: 31-42.
-
(2007)
Plant Mol. Biol.
, vol.65
, pp. 31-42
-
-
Deng, Z.Y.1
Wang, T.2
-
9
-
-
35848970060
-
The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice
-
Dreni, L., Jacchia, S., Fornara, F., Fornari, M., Ouwerkerk, P.B., An, G. et al. (2007) The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J. 52: 690-699.
-
(2007)
Plant J.
, vol.52
, pp. 690-699
-
-
Dreni, L.1
Jacchia, S.2
Fornara, F.3
Fornari, M.4
Ouwerkerk, P.B.5
An, G.6
-
10
-
-
80051937006
-
Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy
-
Dreni, L., Pilatone, A., Yun, D., Erreni, S., Pajoro, A., Caporali, E. et al. (2011) Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy. Plant Cell 23: 2850-2863.
-
(2011)
Plant Cell
, vol.23
, pp. 2850-2863
-
-
Dreni, L.1
Pilatone, A.2
Yun, D.3
Erreni, S.4
Pajoro, A.5
Caporali, E.6
-
11
-
-
75549090603
-
The Pfam protein families database
-
Finn, R.D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J.E. et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38: D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
-
12
-
-
78651314945
-
Rice expression atlas in reproductive development
-
Fujita, M., Horiuchi, Y., Ueda, Y., Mizuta, Y., Kubo, T., Yano, K. et al. (2010) Rice expression atlas in reproductive development. Plant Cell Physiol. 51: 2060-2081.
-
(2010)
Plant Cell Physiol.
, vol.51
, pp. 2060-2081
-
-
Fujita, M.1
Horiuchi, Y.2
Ueda, Y.3
Mizuta, Y.4
Kubo, T.5
Yano, K.6
-
14
-
-
54149084809
-
Various spatiotemporal expression profiles of anther-expressed genes in rice
-
Hobo, T., Suwabe, K., Aya, K., Suzuki, G., Yano, K., Ishimizu, T. et al. (2008) Various spatiotemporal expression profiles of anther-expressed genes in rice. Plant Cell Physiol. 49: 1417-1428.
-
(2008)
Plant Cell Physiol.
, vol.49
, pp. 1417-1428
-
-
Hobo, T.1
Suwabe, K.2
Aya, K.3
Suzuki, G.4
Yano, K.5
Ishimizu, T.6
-
15
-
-
17844410215
-
Transcriptome analysis of haploid male gametophyte development in Arabidopsis
-
Honys, D. and Twell, D. (2004) Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol. 5: R85.
-
(2004)
Genome Biol.
, vol.5
-
-
Honys, D.1
Twell, D.2
-
16
-
-
60249084047
-
Analyses of advanced rice anther transcriptomes reveal global tap-etum secretory functions and potential proteins for lipid exine formation
-
Huang, M.D., Wei, F.J., Wu, C.C., Hsing, Y.I. and Huang, A.H. (2009) Analyses of advanced rice anther transcriptomes reveal global tap-etum secretory functions and potential proteins for lipid exine formation. Plant Physiol. 149: 694-707.
-
(2009)
Plant Physiol.
, vol.149
, pp. 694-707
-
-
Huang, M.D.1
Wei, F.J.2
Wu, C.C.3
Hsing, Y.I.4
Huang, A.H.5
-
17
-
-
14644408760
-
Rice plant development: From zygote to spikelet
-
Itoh, J., Nonomura, K., Ikeda, K., Yamaki, S., Inukai, Y., Yamagishi, H. et al. (2005) Rice plant development: from zygote to spikelet. Plant Cell Physiol. 46: 23-47.
-
(2005)
Plant Cell Physiol.
, vol.46
, pp. 23-47
-
-
Itoh, J.1
Nonomura, K.2
Ikeda, K.3
Yamaki, S.4
Inukai, Y.5
Yamagishi, H.6
-
18
-
-
29544446926
-
Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa)
-
Jain, M., Kaur, N., Garg, R., Thakur, J.K., Tyagi, A.K. and Khurana, J.P. (2006a) Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Funct. Integr. Genomics 6: 47-59.
-
(2006)
Funct. Integr. Genomics
, vol.6
, pp. 47-59
-
-
Jain, M.1
Kaur, N.2
Garg, R.3
Thakur, J.K.4
Tyagi, A.K.5
Khurana, J.P.6
-
19
-
-
33751118738
-
Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants
-
Jain, M., Tyagi, A.K. and Khurana, J.P. (2006b) Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants. FEBS J. 273: 5245-5260.
-
(2006)
FEBS J.
, vol.273
, pp. 5245-5260
-
-
Jain, M.1
Tyagi, A.K.2
Khurana, J.P.3
-
20
-
-
0031048320
-
Sense and antisense transcripts of the maize MuDR regulatory transposon localized by in situ hybridization
-
Joanin, P., Hershberger, R.J., Benito, M.I. and Walbot, V. (1997) Sense and antisense transcripts of the maize MuDR regulatory transposon localized by in situ hybridization. Plant Mol. Biol. 33: 23-36.
-
(1997)
Plant Mol. Biol.
, vol.33
, pp. 23-36
-
-
Joanin, P.1
Hershberger, R.J.2
Benito, M.I.3
Walbot, V.4
-
21
-
-
39749117921
-
Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte
-
Johnston, A.J., Meier, P., Gheyselinck, J., Wuest, S.E., Federer, M., Schlagenhauf, E. et al. (2007) Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte. Genome Biol. 8: R204.
-
(2007)
Genome Biol.
, vol.8
-
-
Johnston, A.J.1
Meier, P.2
Gheyselinck, J.3
Wuest, S.E.4
Federer, M.5
Schlagenhauf, E.6
-
22
-
-
35948958253
-
Genome-wide expression profiling of the Arabidopsis female gam-etophyte identifies families of small, secreted proteins
-
Jones-Rhoades, M.W., Borevitz, J.O. and Preuss, D. (2007) Genome-wide expression profiling of the Arabidopsis female gam-etophyte identifies families of small, secreted proteins. PLoS Genet. 3: 1848-1861.
-
(2007)
PLoS Genet.
, vol.3
, pp. 1848-1861
-
-
Jones-Rhoades, M.W.1
Borevitz, J.O.2
Preuss, D.3
-
23
-
-
0037354734
-
Arabidopsis MET1 cytosine methyltrans-ferase mutants
-
Kankel, M.W., Ramsey, D.E., Stokes, T.L., Flowers, S.K., Haag, J.R., Jeddeloh, J.A. et al. (2003) Arabidopsis MET1 cytosine methyltrans-ferase mutants. Genetics 163: 1109-1122.
-
(2003)
Genetics
, vol.163
, pp. 1109-1122
-
-
Kankel, M.W.1
Ramsey, D.E.2
Stokes, T.L.3
Flowers, S.K.4
Haag, J.R.5
Jeddeloh, J.A.6
-
24
-
-
55249089227
-
Genome-wide identification, organization and phylo-genetic analysis of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analysis during reproductive development and stress in rice
-
Kapoor, M., Arora, R., Lama, T., Nijhawan, A., Khurana, J.P., Tyagi, A.K. et al. (2008) Genome-wide identification, organization and phylo-genetic analysis of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics 9: 451.
-
(2008)
BMC Genomics
, vol.9
, pp. 451
-
-
Kapoor, M.1
Arora, R.2
Lama, T.3
Nijhawan, A.4
Khurana, J.P.5
Tyagi, A.K.6
-
25
-
-
0037418586
-
Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis
-
Kato, M., Miura, A., Bender, J., Jacobsen, S.E. and Kakutani, T. (2003) Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr. Biol. 13: 421-426.
-
(2003)
Curr. Biol.
, vol.13
, pp. 421-426
-
-
Kato, M.1
Miura, A.2
Bender, J.3
Jacobsen, S.E.4
Kakutani, T.5
-
26
-
-
0027232818
-
Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development
-
Kouchi, H. and Hata, S. (1993) Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development. Mol. Gen. Genet. 238: 106-119.
-
(1993)
Mol. Gen. Genet.
, vol.238
, pp. 106-119
-
-
Kouchi, H.1
Hata, S.2
-
27
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law, J.A. and Jacobsen, S.E. (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11: 204-220.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
28
-
-
78650637906
-
Epigenetic reprogramming during vegetative phase change in maize
-
Li, H., Freeling, M. and Lisch, D. (2010) Epigenetic reprogramming during vegetative phase change in maize. Proc. Natl Acad. Sci. USA 107: 22184-22189.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 22184-22189
-
-
Li, H.1
Freeling, M.2
Lisch, D.3
-
29
-
-
80051945889
-
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate
-
Li, H., Liang, W., Hu, Y., Zhu, L., Yin, C., Xu, J. et al. (2011) Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell 23: 2536-2552.
-
(2011)
Plant Cell
, vol.23
, pp. 2536-2552
-
-
Li, H.1
Liang, W.2
Hu, Y.3
Zhu, L.4
Yin, C.5
Xu, J.6
-
30
-
-
34547884302
-
Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice
-
Li, M., Xu, W., Yang, W., Kong, Z. and Xue, Y. (2007) Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice. Plant Physiol. 144: 1797-1812.
-
(2007)
Plant Physiol.
, vol.144
, pp. 1797-1812
-
-
Li, M.1
Xu, W.2
Yang, W.3
Kong, Z.4
Xue, Y.5
-
31
-
-
0035874929
-
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
-
Lindroth, A.M., Cao, X., Jackson, J.P., Zilberman, D., McCallum, C.M., Henikoff, S. et al. (2001) Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 292: 2077-2080.
-
(2001)
Science
, vol.292
, pp. 2077-2080
-
-
Lindroth, A.M.1
Cao, X.2
Jackson, J.P.3
Zilberman, D.4
McCallum, C.M.5
Henikoff, S.6
-
32
-
-
0036833565
-
Mutator transposons
-
Lisch, D. (2002) Mutator transposons. Trends Plant Sci. 7: 498-504.
-
(2002)
Trends Plant Sci.
, vol.7
, pp. 498-504
-
-
Lisch, D.1
-
33
-
-
74049151191
-
Meiotic and mitotic cell cycle mutants involved in gametophyte development in Arabidopsis
-
Liu, J. and Qu, L.J. (2008) Meiotic and mitotic cell cycle mutants involved in gametophyte development in Arabidopsis. Mol. Plant 1: 564-574.
-
(2008)
Mol. Plant
, vol.1
, pp. 564-574
-
-
Liu, J.1
Qu, L.J.2
-
34
-
-
0032758310
-
OsMADS13, a novel rice MADS-box gene expressed during ovule development
-
Lopez-Dee, Z.P., Wittich, P., Enrico Pe, M., Rigola, D., Del Buono, I., Gorla, M.S. et al. (1999) OsMADS13, a novel rice MADS-box gene expressed during ovule development. Dev. Genet. 25: 237-244.
-
(1999)
Dev. Genet.
, vol.25
, pp. 237-244
-
-
Lopez-Dee, Z.P.1
Wittich, P.2
Enrico Pe, M.3
Rigola, D.4
Del Buono, I.5
Gorla, M.S.6
-
35
-
-
59949093651
-
Male reproductive development: Gene expression profiling of maize anther and pollen ontogeny
-
Ma, J., Skibbe, D.S., Fernandes, J. and Walbot, V. (2008) Male reproductive development: gene expression profiling of maize anther and pollen ontogeny. Genome Biol. 9: R181.
-
(2008)
Genome Biol.
, vol.9
-
-
Ma, J.1
Skibbe, D.S.2
Fernandes, J.3
Walbot, V.4
-
36
-
-
0035837378
-
Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
-
Miura, A., Yonebayashi, S., Watanabe, K., Toyama, T., Shimada, H. and Kakutani, T. (2001) Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 411: 212-214.
-
(2001)
Nature
, vol.411
, pp. 212-214
-
-
Miura, A.1
Yonebayashi, S.2
Watanabe, K.3
Toyama, T.4
Shimada, H.5
Kakutani, T.6
-
37
-
-
0025783786
-
The transposable element Tam1 from Antirrhinum majus shows structural homology to the maize transposon En/Spm and has no sequence specificity of insertion
-
Nacken, W.K., Piotrowiak, R., Saedler, H. and Sommer, H. (1991) The transposable element Tam1 from Antirrhinum majus shows structural homology to the maize transposon En/Spm and has no sequence specificity of insertion. Mol. Gen. Genet. 228: 201-208.
-
(1991)
Mol. Gen. Genet.
, vol.228
, pp. 201-208
-
-
Nacken, W.K.1
Piotrowiak, R.2
Saedler, H.3
Sommer, H.4
-
38
-
-
34147098535
-
An expression atlas of rice mRNAs and small RNAs
-
Nobuta, K., Venu, R.C., Lu, C., Belo, A., Vemaraju, K., Kulkarni, K. et al. (2007) An expression atlas of rice mRNAs and small RNAs. Nat. Biotechnol. 25: 473-477.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 473-477
-
-
Nobuta, K.1
Venu, R.C.2
Lu, C.3
Belo, A.4
Vemaraju, K.5
Kulkarni, K.6
-
39
-
-
79851487583
-
A novel RNA-recognition-motif protein is required for premeiotic G1/S-phase transition in rice (Oryza sativa L.)
-
Nonomura, K., Eiguchi, M., Nakano, M., Takashima, K., Komeda, N., Fukuchi, S. et al. (2011) A novel RNA-recognition-motif protein is required for premeiotic G1/S-phase transition in rice (Oryza sativa L.). PLoS Genet. 7: e1001265.
-
(2011)
PLoS Genet.
, vol.7
-
-
Nonomura, K.1
Eiguchi, M.2
Nakano, M.3
Takashima, K.4
Komeda, N.5
Fukuchi, S.6
-
40
-
-
0042922499
-
The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice
-
Nonomura, K., Miyoshi, K., Eiguchi, M., Suzuki, T., Miyao, A., Hirochika, H. et al. (2003) The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice. Plant Cell 15: 1728-1739.
-
(2003)
Plant Cell
, vol.15
, pp. 1728-1739
-
-
Nonomura, K.1
Miyoshi, K.2
Eiguchi, M.3
Suzuki, T.4
Miyao, A.5
Hirochika, H.6
-
41
-
-
35348889711
-
A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice
-
Nonomura, K., Morohoshi, A., Nakano, M., Eiguchi, M., Miyao, A., Hirochika, H. et al. (2007) A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice. Plant Cell 19: 2583-2594.
-
(2007)
Plant Cell
, vol.19
, pp. 2583-2594
-
-
Nonomura, K.1
Morohoshi, A.2
Nakano, M.3
Eiguchi, M.4
Miyao, A.5
Hirochika, H.6
-
42
-
-
32244447080
-
PAIR2 is essential for homologous chromosome synapsis in rice meiosis i
-
Nonomura, K., Nakano, M., Eiguchi, M., Suzuki, T. and Kurata, N. (2006) PAIR2 is essential for homologous chromosome synapsis in rice meiosis I. J. Cell Sci. 119: 217-225.
-
(2006)
J. Cell Sci.
, vol.119
, pp. 217-225
-
-
Nonomura, K.1
Nakano, M.2
Eiguchi, M.3
Suzuki, T.4
Kurata, N.5
-
43
-
-
1842712462
-
The novel gene HOMOLOGOUS PAIRING ABERRATION in RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis
-
Nonomura, K., Nakano, M., Fukuda, T., Eiguchi, M., Miyao, A., Hirochika, H. et al. (2004) The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis. Plant Cell 16: 1008-1020.
-
(2004)
Plant Cell
, vol.16
, pp. 1008-1020
-
-
Nonomura, K.1
Nakano, M.2
Fukuda, T.3
Eiguchi, M.4
Miyao, A.5
Hirochika, H.6
-
44
-
-
79551709459
-
Distinct gene expression profiles in egg and synergid cells of rice as revealed by cell type-specific microarrays
-
Ohnishi, T., Takanashi, H., Mogi, M., Takahashi, H., Kikuchi, S., Yano, K. et al. (2011) Distinct gene expression profiles in egg and synergid cells of rice as revealed by cell type-specific microarrays. Plant Physiol 155: 881-891.
-
(2011)
Plant Physiol
, vol.155
, pp. 881-891
-
-
Ohnishi, T.1
Takanashi, H.2
Mogi, M.3
Takahashi, H.4
Kikuchi, S.5
Yano, K.6
-
45
-
-
77950086568
-
Control of female gamete formation by a small RNA pathway in Arabidopsis
-
Olmedo-Monfil, V., Duran-Figueroa, N., Arteaga-Vazquez, M., Demesa-Arevalo, E., Autran, D., Grimanelli, D. et al. (2010) Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 464: 628-632.
-
(2010)
Nature
, vol.464
, pp. 628-632
-
-
Olmedo-Monfil, V.1
Duran-Figueroa, N.2
Arteaga-Vazquez, M.3
Demesa-Arevalo, E.4
Autran, D.5
Grimanelli, D.6
-
46
-
-
33846101405
-
The TIGR Rice Genome Annotation Resource: Improvements and new features
-
Ouyang, S., Zhu, W., Hamilton, J., Lin, H., Campbell, M., Childs, K. et al. (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res. 35: D883-D887.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Ouyang, S.1
Zhu, W.2
Hamilton, J.3
Lin, H.4
Campbell, M.5
Childs, K.6
-
47
-
-
75549087883
-
PlnTFDB: Updated content and new features of the plant transcription factor database
-
Perez-Rodriguez, P., Riano-Pachon, D.M., Correa, L.G., Rensing, S.A., Kersten, B. and Mueller-Roeber, B. (2010) PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res. 38: D822-D827.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Perez-Rodriguez, P.1
Riano-Pachon, D.M.2
Correa, L.G.3
Rensing, S.A.4
Kersten, B.5
Mueller-Roeber, B.6
-
48
-
-
26944493068
-
Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation
-
Pina, C., Pinto, F., Feijo, J.A. and Becker, J.D. (2005) Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol. 138: 744-756.
-
(2005)
Plant Physiol.
, vol.138
, pp. 744-756
-
-
Pina, C.1
Pinto, F.2
Feijo, J.A.3
Becker, J.D.4
-
49
-
-
0035121004
-
The MuDR trans-poson terminal inverted repeat contains a complex plant promoter directing distinct somatic and germinal programs
-
Raizada, M.N., Benito, M.I. and Walbot, V. (2001a) The MuDR trans-poson terminal inverted repeat contains a complex plant promoter directing distinct somatic and germinal programs. Plant J. 25: 79-91.
-
(2001)
Plant J.
, vol.25
, pp. 79-91
-
-
Raizada, M.N.1
Benito, M.I.2
Walbot, V.3
-
50
-
-
0035097247
-
A maize MuDR transposon promoter shows limited autoregulation
-
Raizada, M.N., Brewer, K.V. and Walbot, V. (2001b) A maize MuDR transposon promoter shows limited autoregulation. Mol. Genet. Genomics 265: 82-94.
-
(2001)
Mol. Genet. Genomics
, vol.265
, pp. 82-94
-
-
Raizada, M.N.1
Brewer, K.V.2
Walbot, V.3
-
51
-
-
38549136871
-
The Rice Annotation Project Database (RAP-DB): 2008 update
-
Rice Annotation Project
-
Rice Annotation Project. (2008) The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res. 36: D1028-D1033.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
-
52
-
-
48349132000
-
Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins
-
Sakane, I., Kamataki, C., Takizawa, Y., Nakashima, M., Toki, S., Ichikawa, H. et al. (2008) Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins. Nucleic Acids Res. 36: 4266-4276.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4266-4276
-
-
Sakane, I.1
Kamataki, C.2
Takizawa, Y.3
Nakashima, M.4
Toki, S.5
Ichikawa, H.6
-
53
-
-
80053305681
-
Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development
-
Schmidt, A., Wuest, S.E., Vijverberg, K., Baroux, C., Kleen, D. and Grossniklaus, U. (2011) Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development. PLoS Biol. 9: e1001155.
-
(2011)
PLoS Biol.
, vol.9
-
-
Schmidt, A.1
Wuest, S.E.2
Vijverberg, K.3
Baroux, C.4
Kleen, D.5
Grossniklaus, U.6
-
54
-
-
78751515245
-
Ovule development in Arabidopsis: Progress and challenge
-
Shi, D.Q. and Yang, W.C. (2011) Ovule development in Arabidopsis: progress and challenge. Curr. Opin. Plant Biol. 14: 74-80.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 74-80
-
-
Shi, D.Q.1
Yang, W.C.2
-
55
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin, R.K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J.D., Feijo, J.A. et al. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdzic, M.4
Becker, J.D.5
Feijo, J.A.6
-
56
-
-
34447104173
-
Identification of genes expressed in the Arabidopsis female gam-etophyte
-
Steffen, J.G., Kang, I.H., Macfarlane, J. and Drews, G.N. (2007) Identification of genes expressed in the Arabidopsis female gam-etophyte. Plant J. 51: 281-292.
-
(2007)
Plant J.
, vol.51
, pp. 281-292
-
-
Steffen, J.G.1
Kang, I.H.2
MacFarlane, J.3
Drews, G.N.4
-
57
-
-
54149088703
-
Separated transcriptomes of male gametophyte and tapetum in rice: Validity of a laser microdissection (LM) microarray
-
Suwabe, K., Suzuki, G., Takahashi, H., Shiono, K., Endo, M., Yano, K. et al. (2008) Separated transcriptomes of male gametophyte and tapetum in rice: validity of a laser microdissection (LM) microarray. Plant Cell Physiol. 49: 1407-1416.
-
(2008)
Plant Cell Physiol.
, vol.49
, pp. 1407-1416
-
-
Suwabe, K.1
Suzuki, G.2
Takahashi, H.3
Shiono, K.4
Endo, M.5
Yano, K.6
-
58
-
-
78049306506
-
A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection
-
Takahashi, H., Kamakura, H., Sato, Y., Shiono, K., Abiko, T., Tsutsumi, N. et al. (2010) A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection. J. Plant Res. 123: 807-813.
-
(2010)
J. Plant Res.
, vol.123
, pp. 807-813
-
-
Takahashi, H.1
Kamakura, H.2
Sato, Y.3
Shiono, K.4
Abiko, T.5
Tsutsumi, N.6
-
59
-
-
0742285080
-
Characterization of two rice DNA methyltrans-ferase genes and RNAi-mediated reactivation of a silenced transgene in rice callus
-
Teerawanichpan, P., Chandrasekharan, M.B., Jiang, Y., Narangajavana, J. and Hall, T.C. (2004) Characterization of two rice DNA methyltrans-ferase genes and RNAi-mediated reactivation of a silenced transgene in rice callus. Planta 218: 337-349.
-
(2004)
Planta
, vol.218
, pp. 337-349
-
-
Teerawanichpan, P.1
Chandrasekharan, M.B.2
Jiang, Y.3
Narangajavana, J.4
Hall, T.C.5
-
60
-
-
34247343978
-
Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1
-
Toriba, T., Harada, K., Takamura, A., Nakamura, H., Ichikawa, H., Suzaki, T. et al. (2007) Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1. Mol. Genet. Genomics 277: 457-468.
-
(2007)
Mol. Genet. Genomics
, vol.277
, pp. 457-468
-
-
Toriba, T.1
Harada, K.2
Takamura, A.3
Nakamura, H.4
Ichikawa, H.5
Suzaki, T.6
-
61
-
-
3042725526
-
Plant DNA polymerase lambda, a DNA repair enzyme that functions in plant meristematic and meiotic tissues
-
Uchiyama, Y., Kimura, S., Yamamoto, T., Ishibashi, T. and Sakaguchi, K. (2004) Plant DNA polymerase lambda, a DNA repair enzyme that functions in plant meristematic and meiotic tissues. Eur. J. Biochem. 271: 2799-2807.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 2799-2807
-
-
Uchiyama, Y.1
Kimura, S.2
Yamamoto, T.3
Ishibashi, T.4
Sakaguchi, K.5
-
62
-
-
34247102281
-
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)
-
Wang, D., Pei, K., Fu, Y., Sun, Z., Li, S., Liu, H. et al. (2007) Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene 394: 13-24.
-
(2007)
Gene
, vol.394
, pp. 13-24
-
-
Wang, D.1
Pei, K.2
Fu, Y.3
Sun, Z.4
Li, S.5
Liu, H.6
-
63
-
-
68949166065
-
MER3 is required for normal meiotic crossover formation, but not for pre-synaptic alignment in rice
-
Wang, K., Tang, D., Wang, M., Lu, J., Yu, H., Liu, J. et al. (2009) MER3 is required for normal meiotic crossover formation, but not for pre-synaptic alignment in rice. J. Cell Sci. 122: 2055-2063.
-
(2009)
J. Cell Sci.
, vol.122
, pp. 2055-2063
-
-
Wang, K.1
Tang, D.2
Wang, M.3
Lu, J.4
Yu, H.5
Liu, J.6
-
64
-
-
77950104996
-
A dynamic gene expression atlas covering the entire life cycle of rice
-
Wang, L., Xie, W., Chen, Y., Tang, W., Yang, J., Ye, R. et al. (2010) A dynamic gene expression atlas covering the entire life cycle of rice. Plant J. 61: 752-766.
-
(2010)
Plant J.
, vol.61
, pp. 752-766
-
-
Wang, L.1
Xie, W.2
Chen, Y.3
Tang, W.4
Yang, J.5
Ye, R.6
-
65
-
-
77950363405
-
The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice
-
Wang, M., Wang, K., Tang, D., Wei, C., Li, M., Shen, Y. et al. (2010) The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice. Plant Cell 22: 417-430.
-
(2010)
Plant Cell
, vol.22
, pp. 417-430
-
-
Wang, M.1
Wang, K.2
Tang, D.3
Wei, C.4
Li, M.5
Shen, Y.6
-
66
-
-
57749173839
-
Maize Mutator trans-poson
-
Wang, Y., Xu, M., Deng, D. and Bian, Y. (2008a) Maize Mutator trans-poson. Front. Agric. China 2: 396-403.
-
(2008)
Front. Agric. China
, vol.2
, pp. 396-403
-
-
Wang, Y.1
Xu, M.2
Deng, D.3
Bian, Y.4
-
67
-
-
57749119299
-
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
-
Wang, Y., Zhang, W.Z., Song, L.F., Zou, J.J., Su, Z. and Wu, W.H. (2008b) Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol. 148: 1201-1211.
-
(2008)
Plant Physiol.
, vol.148
, pp. 1201-1211
-
-
Wang, Y.1
Zhang, W.Z.2
Song, L.F.3
Zou, J.J.4
Su, Z.5
Wu, W.H.6
-
68
-
-
84862184338
-
The functions of RNA-dependent RNA polymerases in Arabidopsis
-
Willmann, M.R., Endres, M.W., Cook, R.T. and Gregory, B.D. (2011) The functions of RNA-dependent RNA polymerases in Arabidopsis. The Arabidopsis Book: e0146.
-
(2011)
The Arabidopsis Book
-
-
Willmann, M.R.1
Endres, M.W.2
Cook, R.T.3
Gregory, B.D.4
-
69
-
-
33750244877
-
Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors
-
Woodhouse, M.R., Freeling, M. and Lisch, D. (2006a) Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors. PLoS Biol. 4: e339.
-
(2006)
PLoS Biol.
, vol.4
-
-
Woodhouse, M.R.1
Freeling, M.2
Lisch, D.3
-
70
-
-
33644769152
-
The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize
-
Woodhouse, M.R., Freeling, M. and Lisch, D. (2006b) The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize. Genetics 172: 579-592.
-
(2006)
Genetics
, vol.172
, pp. 579-592
-
-
Woodhouse, M.R.1
Freeling, M.2
Lisch, D.3
-
71
-
-
77949485461
-
Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes
-
Wuest, S.E., Vijverberg, K., Schmidt, A., Weiss, M., Gheyselinck, J., Lohr, M. et al. (2010) Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr. Biol. 20: 506-512.
-
(2010)
Curr. Biol.
, vol.20
, pp. 506-512
-
-
Wuest, S.E.1
Vijverberg, K.2
Schmidt, A.3
Weiss, M.4
Gheyselinck, J.5
Lohr, M.6
-
72
-
-
1042290704
-
The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa
-
Yamaguchi, T., Nagasawa, N., Kawasaki, S., Matsuoka, M., Nagato, Y. and Hirano, H.Y. (2004) The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Plant Cell 16: 500-509.
-
(2004)
Plant Cell
, vol.16
, pp. 500-509
-
-
Yamaguchi, T.1
Nagasawa, N.2
Kawasaki, S.3
Matsuoka, M.4
Nagato, Y.5
Hirano, H.Y.6
-
73
-
-
79551684142
-
Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice
-
Yamaki, S., Nagato, Y., Kurata, N. and Nonomura, K. (2011) Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice. Dev. Biol. 351: 208-216.
-
(2011)
Dev. Biol.
, vol.351
, pp. 208-216
-
-
Yamaki, S.1
Nagato, Y.2
Kurata, N.3
Nonomura, K.4
-
74
-
-
77952469977
-
Female gametophyte development in flowering plants
-
Yang, W.C., Shi, D.Q. and Chen, Y.H. (2010) Female gametophyte development in flowering plants. Annu. Rev. Plant Biol. 61: 89-108.
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 89-108
-
-
Yang, W.C.1
Shi, D.Q.2
Chen, Y.H.3
-
75
-
-
67649679337
-
Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis
-
Yuan, W., Li, X., Chang, Y., Wen, R., Chen, G., Zhang, Q. et al. (2009) Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis. Plant J. 59: 303-315.
-
(2009)
Plant J.
, vol.59
, pp. 303-315
-
-
Yuan, W.1
Li, X.2
Chang, Y.3
Wen, R.4
Chen, G.5
Zhang, Q.6
-
76
-
-
33644839301
-
The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis
-
Zhang, L., Tao, J., Wang, S., Chong, K. and Wang, T. (2006) The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis. Plant Mol. Biol. 60: 533-554.
-
(2006)
Plant Mol. Biol.
, vol.60
, pp. 533-554
-
-
Zhang, L.1
Tao, J.2
Wang, S.3
Chong, K.4
Wang, T.5
|