-
1
-
-
70049084728
-
Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle
-
and () . : .
-
Archer, S.K., Luu, V.D., de Queiroz, R.A., Brems, S., and Clayton, C. (2009) Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle. PLoS Pathog 5: e1000565.
-
(2009)
PLoS Pathog
, vol.5
-
-
Archer, S.K.1
Luu, V.D.2
de Queiroz, R.A.3
Brems, S.4
Clayton, C.5
-
2
-
-
67349110426
-
Identification of core components of the exon junction complex in trypanosomes
-
Bercovich, N., Levin, M.J., Clayton, C., and Vazquez, M. (2009) Identification of core components of the exon junction complex in trypanosomes. Mol Biochem Parasitol 166: 190-193.
-
(2009)
Mol Biochem Parasitol
, vol.166
, pp. 190-193
-
-
Bercovich, N.1
Levin, M.J.2
Clayton, C.3
Vazquez, M.4
-
3
-
-
0018601361
-
Schonenberger Cultivation and in vitro cloning or procyclic culture forms of Trypanosoma brucei in a semi-defined medium. Short communication
-
Brun, R., and Schonenberger (1979) Cultivation and in vitro cloning or procyclic culture forms of Trypanosoma brucei in a semi-defined medium. Short communication. Acta Trop 36: 289-292.
-
(1979)
Acta Trop
, vol.36
, pp. 289-292
-
-
Brun, R.1
-
4
-
-
3042665732
-
Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis
-
Candiano, G., Bruschi, M., Musante, L., Santucci, L., Ghiggeri, G.M., Carnemolla, B., etal. (2004) Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis 25: 1327-1333.
-
(2004)
Electrophoresis
, vol.25
, pp. 1327-1333
-
-
Candiano, G.1
Bruschi, M.2
Musante, L.3
Santucci, L.4
Ghiggeri, G.M.5
Carnemolla, B.6
-
5
-
-
68949187846
-
mRNA nuclear export at a glance
-
Carmody, S.R., and Wente, S.R. (2009) mRNA nuclear export at a glance. J Cell Sci 122: 1933-1937.
-
(2009)
J Cell Sci
, vol.122
, pp. 1933-1937
-
-
Carmody, S.R.1
Wente, S.R.2
-
6
-
-
34447572786
-
Recruitment of mRNAs to cytoplasmic ribonucleoprotein granules in trypanosomes
-
Cassola, A., De Gaudenzi, J.G., and Frasch, A.C. (2007) Recruitment of mRNAs to cytoplasmic ribonucleoprotein granules in trypanosomes. Mol Microbiol 65: 655-670.
-
(2007)
Mol Microbiol
, vol.65
, pp. 655-670
-
-
Cassola, A.1
De Gaudenzi, J.G.2
Frasch, A.C.3
-
7
-
-
0034329461
-
A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae
-
Chavez, S., Beilharz, T., Rondon, A.G., Erdjument-Bromage, H., Tempst, P., Svejstrup, J.Q., etal. (2000) A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae. EMBO J 19: 5824-5834.
-
(2000)
EMBO J
, vol.19
, pp. 5824-5834
-
-
Chavez, S.1
Beilharz, T.2
Rondon, A.G.3
Erdjument-Bromage, H.4
Tempst, P.5
Svejstrup, J.Q.6
-
8
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski, P., and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162: 156-159.
-
(1987)
Anal Biochem
, vol.162
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
9
-
-
84867678330
-
The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism
-
Das, A., Morales, R., Banday, M., Garcia, S., Hao, L., Cross, G.A., etal. (2012) The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism. RNA 18: 1968-1983.
-
(2012)
RNA
, vol.18
, pp. 1968-1983
-
-
Das, A.1
Morales, R.2
Banday, M.3
Garcia, S.4
Hao, L.5
Cross, G.A.6
-
10
-
-
71049191352
-
Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor
-
DeGrasse, J.A., DuBois, K.N., Devos, D., Siegel, T.N., Sali, A., Field, M.C., etal. (2009) Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor. Mol Cell Proteomics 8: 2119-2130.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 2119-2130
-
-
DeGrasse, J.A.1
DuBois, K.N.2
Devos, D.3
Siegel, T.N.4
Sali, A.5
Field, M.C.6
-
11
-
-
49249093497
-
The RNA-binding protein TbDRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes
-
Estevez, A.M. (2008) The RNA-binding protein TbDRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes. Nucleic Acids Res 36: 4573-4586.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4573-4586
-
-
Estevez, A.M.1
-
12
-
-
79953776282
-
Posttranscriptional control and the role of RNA-binding proteins in gene regulation in trypanosomatid protozoan parasites
-
Fernández-Moya, S.M., and Estévez, A.M. (2010) Posttranscriptional control and the role of RNA-binding proteins in gene regulation in trypanosomatid protozoan parasites. Wiley Interdiscip Rev RNA 1: 34-46.
-
(2010)
Wiley Interdiscip Rev RNA
, vol.1
, pp. 34-46
-
-
Fernández-Moya, S.M.1
Estévez, A.M.2
-
13
-
-
1842417078
-
Elements in the 3′ untranslated region of procyclin mRNA regulate expression in insect forms of Trypanosoma brucei by modulating RNA stability and translation
-
Furger, A., Schurch, N., Kurath, U., and Roditi, I. (1997) Elements in the 3′ untranslated region of procyclin mRNA regulate expression in insect forms of Trypanosoma brucei by modulating RNA stability and translation. Mol Cell Biol 17: 4372-4380.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 4372-4380
-
-
Furger, A.1
Schurch, N.2
Kurath, U.3
Roditi, I.4
-
14
-
-
0037040895
-
Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p
-
Green, D.M., Marfatia, K.A., Crafton, E.B., Zhang, X., Cheng, X., and Corbett, A.H. (2002) Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p. J Biol Chem 277: 7752-7760.
-
(2002)
J Biol Chem
, vol.277
, pp. 7752-7760
-
-
Green, D.M.1
Marfatia, K.A.2
Crafton, E.B.3
Zhang, X.4
Cheng, X.5
Corbett, A.H.6
-
15
-
-
77956841596
-
The pre-mRNA splicing machinery of trypanosomes: complex or simplified?
-
Gunzl, A. (2010) The pre-mRNA splicing machinery of trypanosomes: complex or simplified? Eukaryot Cell 9: 1159-1170.
-
(2010)
Eukaryot Cell
, vol.9
, pp. 1159-1170
-
-
Gunzl, A.1
-
16
-
-
1542267816
-
Transportin2 functions as importin and mediates nuclear import of HuR
-
Guttinger, S., Muhlhausser, P., Koller-Eichhorn, R., Brennecke, J., and Kutay, U. (2004) Transportin2 functions as importin and mediates nuclear import of HuR. Proc Natl Acad Sci USA 101: 2918-2923.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 2918-2923
-
-
Guttinger, S.1
Muhlhausser, P.2
Koller-Eichhorn, R.3
Brennecke, J.4
Kutay, U.5
-
17
-
-
33750616165
-
The procyclin-associated genes of Trypanosoma brucei are not essential for cyclical transmission by tsetse
-
Haenni, S., Renggli, C.K., Fragoso, C.M., Oberle, M., and Roditi, I. (2006) The procyclin-associated genes of Trypanosoma brucei are not essential for cyclical transmission by tsetse. Mol Biochem Parasitol 150: 144-156.
-
(2006)
Mol Biochem Parasitol
, vol.150
, pp. 144-156
-
-
Haenni, S.1
Renggli, C.K.2
Fragoso, C.M.3
Oberle, M.4
Roditi, I.5
-
18
-
-
0028053101
-
A conserved stem-loop structure in the 3′ untranslated region of procyclin mRNAs regulates expression in Trypanosoma brucei
-
Hehl, A., Vassella, E., Braun, R., and Roditi, I. (1994) A conserved stem-loop structure in the 3′ untranslated region of procyclin mRNAs regulates expression in Trypanosoma brucei. Proc Natl Acad Sci USA 91: 370-374.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 370-374
-
-
Hehl, A.1
Vassella, E.2
Braun, R.3
Roditi, I.4
-
19
-
-
44449169243
-
Regulation of mRNP dynamics along the export pathway
-
Iglesias, N., and Stutz, F. (2008) Regulation of mRNP dynamics along the export pathway. FEBS Lett 582: 1987-1996.
-
(2008)
FEBS Lett
, vol.582
, pp. 1987-1996
-
-
Iglesias, N.1
Stutz, F.2
-
20
-
-
34648816826
-
Exporting RNA from the nucleus to the cytoplasm
-
Kohler, A., and Hurt, E. (2007) Exporting RNA from the nucleus to the cytoplasm. Nat Rev Mol Cell Biol 8: 761-773.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 761-773
-
-
Kohler, A.1
Hurt, E.2
-
21
-
-
78149292214
-
The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution
-
and () . : .
-
Kolev, N.G., Franklin, J.B., Carmi, S., Shi, H., Michaeli, S., and Tschudi, C. (2010) The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution. PLoS Pathog 6: e1001090.
-
(2010)
PLoS Pathog
, vol.6
-
-
Kolev, N.G.1
Franklin, J.B.2
Carmi, S.3
Shi, H.4
Michaeli, S.5
Tschudi, C.6
-
22
-
-
78650533544
-
Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids
-
Kramer, S., and Carrington, M. (2011) Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids. Trends Parasitol 27: 23-30.
-
(2011)
Trends Parasitol
, vol.27
, pp. 23-30
-
-
Kramer, S.1
Carrington, M.2
-
23
-
-
77951827772
-
Genome-wide in silico screen for CCCH-type zinc finger proteins of Trypanosoma brucei, Trypanosoma cruzi and Leishmania major
-
and () . : .
-
Kramer, S., Kimblin, N.C., and Carrington, M. (2010) Genome-wide in silico screen for CCCH-type zinc finger proteins of Trypanosoma brucei, Trypanosoma cruzi and Leishmania major. BMC Genomics 11: 283.
-
(2010)
BMC Genomics
, vol.11
, pp. 283
-
-
Kramer, S.1
Kimblin, N.C.2
Carrington, M.3
-
24
-
-
0034672093
-
The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
-
Le Hir, H., Izaurralde, E., Maquat, L.E., and Moore, M.J. (2000) The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J 19: 6860-6869.
-
(2000)
EMBO J
, vol.19
, pp. 6860-6869
-
-
Le Hir, H.1
Izaurralde, E.2
Maquat, L.E.3
Moore, M.J.4
-
25
-
-
0036829415
-
Intron status and 3′-end formation control cotranscriptional export of mRNA
-
Lei, E.P., and Silver, P.A. (2002) Intron status and 3′-end formation control cotranscriptional export of mRNA. Genes Dev 16: 2761-2766.
-
(2002)
Genes Dev
, vol.16
, pp. 2761-2766
-
-
Lei, E.P.1
Silver, P.A.2
-
26
-
-
84862208151
-
GeneDB-an annotation database for pathogens
-
Logan-Klumpler, F.J., De Silva, N., Boehme, U., Rogers, M.B., Velarde, G., McQuillan, J.A., etal. (2012) GeneDB-an annotation database for pathogens. Nucleic Acids Res 40: D98-108.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Logan-Klumpler, F.J.1
De Silva, N.2
Boehme, U.3
Rogers, M.B.4
Velarde, G.5
McQuillan, J.A.6
-
27
-
-
79960647138
-
Alba-domain proteins of Trypanosoma brucei are cytoplasmic RNA-binding proteins that interact with the translation machinery
-
Mani, J., Guttinger, A., Schimanski, B., Heller, M., Acosta-Serrano, A., Pescher, P., etal. (2011) Alba-domain proteins of Trypanosoma brucei are cytoplasmic RNA-binding proteins that interact with the translation machinery. PLoS ONE 6: e22463.
-
(2011)
PLoS ONE
, vol.6
-
-
Mani, J.1
Guttinger, A.2
Schimanski, B.3
Heller, M.4
Acosta-Serrano, A.5
Pescher, P.6
-
28
-
-
77958123318
-
Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei
-
Nilsson, D., Gunasekera, K., Mani, J., Osteras, M., Farinelli, L., Baerlocher, L., etal. (2010) Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei. PLoS Pathog 6: e1001037.
-
(2010)
PLoS Pathog
, vol.6
-
-
Nilsson, D.1
Gunasekera, K.2
Mani, J.3
Osteras, M.4
Farinelli, L.5
Baerlocher, L.6
-
29
-
-
0029737693
-
Regulation of mRNA export in response to stress in Saccharomyces cerevisiae
-
Saavedra, C., Tung, K.S., Amberg, D.C., Hopper, A.K., and Cole, C.N. (1996) Regulation of mRNA export in response to stress in Saccharomyces cerevisiae. Genes Dev 10: 1608-1620.
-
(1996)
Genes Dev
, vol.10
, pp. 1608-1620
-
-
Saavedra, C.1
Tung, K.S.2
Amberg, D.C.3
Hopper, A.K.4
Cole, C.N.5
-
30
-
-
9844219734
-
Yeast heat shock mRNAs are exported through a distinct pathway defined by Rip1p
-
Saavedra, C.A., Hammell, C.M., Heath, C.V., and Cole, C.N. (1997) Yeast heat shock mRNAs are exported through a distinct pathway defined by Rip1p. Genes Dev 11: 2845-2856.
-
(1997)
Genes Dev
, vol.11
, pp. 2845-2856
-
-
Saavedra, C.A.1
Hammell, C.M.2
Heath, C.V.3
Cole, C.N.4
-
31
-
-
27744552907
-
Highly efficient tandem affinity purification of trypanosome protein complexes based on a novel epitope combination
-
Schimanski, B., Nguyen, T.N., and Gunzl, A. (2005) Highly efficient tandem affinity purification of trypanosome protein complexes based on a novel epitope combination. Eukaryot Cell 4: 1942-1950.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 1942-1950
-
-
Schimanski, B.1
Nguyen, T.N.2
Gunzl, A.3
-
32
-
-
70449723338
-
The role of deadenylation in the degradation of unstable mRNAs in trypanosomes
-
Schwede, A., Manful, T., Jha, B.A., Helbig, C., Bercovich, N., Stewart, M., and Clayton, C. (2009) The role of deadenylation in the degradation of unstable mRNAs in trypanosomes. Nucleic Acids Res 37: 5511-5528.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5511-5528
-
-
Schwede, A.1
Manful, T.2
Jha, B.A.3
Helbig, C.4
Bercovich, N.5
Stewart, M.6
Clayton, C.7
-
33
-
-
79958080545
-
An essential nuclear protein in trypanosomes is a component of mRNA transcription/export pathway
-
Serpeloni, M., Moraes, C.B., Muniz, J.R., Motta, M.C., Ramos, A.S., Kessler, R.L., etal. (2011a) An essential nuclear protein in trypanosomes is a component of mRNA transcription/export pathway. PLoS ONE 6: e20730.
-
(2011)
PLoS ONE
, vol.6
-
-
Serpeloni, M.1
Moraes, C.B.2
Muniz, J.R.3
Motta, M.C.4
Ramos, A.S.5
Kessler, R.L.6
-
34
-
-
78651090509
-
Comparative genomics of proteins involved in RNA nucleocytoplasmic export
-
and () . : .
-
Serpeloni, M., Vidal, N.M., Goldenberg, S., Avila, A.R., and Hoffmann, F.G. (2011b) Comparative genomics of proteins involved in RNA nucleocytoplasmic export. BMC Evol Biol 11: 7.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 7
-
-
Serpeloni, M.1
Vidal, N.M.2
Goldenberg, S.3
Avila, A.R.4
Hoffmann, F.G.5
-
35
-
-
0037195151
-
Karyopherin beta 2B participates in mRNA export from the nucleus
-
Shamsher, M.K., Ploski, J., and Radu, A. (2002) Karyopherin beta 2B participates in mRNA export from the nucleus. Proc Natl Acad Sci USA 99: 14195-14199.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14195-14199
-
-
Shamsher, M.K.1
Ploski, J.2
Radu, A.3
-
36
-
-
80052924614
-
Gene expression in Trypanosoma brucei: lessons from high-throughput RNA sequencing
-
Siegel, T.N., Gunasekera, K., Cross, G.A., and Ochsenreiter, T. (2011) Gene expression in Trypanosoma brucei: lessons from high-throughput RNA sequencing. Trends Parasitol 27: 434-441.
-
(2011)
Trends Parasitol
, vol.27
, pp. 434-441
-
-
Siegel, T.N.1
Gunasekera, K.2
Cross, G.A.3
Ochsenreiter, T.4
-
37
-
-
62549158711
-
Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism
-
Stern, M.Z., Gupta, S.K., Salmon-Divon, M., Haham, T., Barda, O., Levi, S., etal. (2009) Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism. RNA 15: 648-665.
-
(2009)
RNA
, vol.15
, pp. 648-665
-
-
Stern, M.Z.1
Gupta, S.K.2
Salmon-Divon, M.3
Haham, T.4
Barda, O.5
Levi, S.6
-
38
-
-
78049296915
-
Nuclear export of mRNA
-
Stewart, M. (2010) Nuclear export of mRNA. Trends Biochem Sci 35: 609-617.
-
(2010)
Trends Biochem Sci
, vol.35
, pp. 609-617
-
-
Stewart, M.1
-
39
-
-
0141469976
-
Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export
-
Strasser, K., and Hurt, E. (2000) Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export. EMBO J 19: 410-420.
-
(2000)
EMBO J
, vol.19
, pp. 410-420
-
-
Strasser, K.1
Hurt, E.2
-
40
-
-
0037118052
-
TREX is a conserved complex coupling transcription with messenger RNA export
-
Strasser, K., Masuda, S., Mason, P., Pfannstiel, J., Oppizzi, M., Rodriguez-Navarro, S., etal. (2002) TREX is a conserved complex coupling transcription with messenger RNA export. Nature 417: 304-308.
-
(2002)
Nature
, vol.417
, pp. 304-308
-
-
Strasser, K.1
Masuda, S.2
Mason, P.3
Pfannstiel, J.4
Oppizzi, M.5
Rodriguez-Navarro, S.6
-
41
-
-
0033625090
-
REF, an evolutionary conserved family of hnRNP-like proteins, interacts with TAP/Mex67p and participates in mRNA nuclear export
-
Stutz, F., Bachi, A., Doerks, T., Braun, I.C., Seraphin, B., Wilm, M., etal. (2000) REF, an evolutionary conserved family of hnRNP-like proteins, interacts with TAP/Mex67p and participates in mRNA nuclear export. RNA 6: 638-650.
-
(2000)
RNA
, vol.6
, pp. 638-650
-
-
Stutz, F.1
Bachi, A.2
Doerks, T.3
Braun, I.C.4
Seraphin, B.5
Wilm, M.6
-
42
-
-
61449182673
-
Differential trypanosome surface coat regulation by a CCCH protein that co-associates with procyclin mRNA cis-elements
-
and () . : .
-
Walrad, P., Paterou, A., Acosta-Serrano, A., and Matthews, K.R. (2009) Differential trypanosome surface coat regulation by a CCCH protein that co-associates with procyclin mRNA cis-elements. PLoS Pathog 5: e1000317.
-
(2009)
PLoS Pathog
, vol.5
-
-
Walrad, P.1
Paterou, A.2
Acosta-Serrano, A.3
Matthews, K.R.4
-
43
-
-
0033525524
-
A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei
-
Wirtz, E., Leal, S., Ochatt, C., and Cross, G.A. (1999) A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei. Mol Biochem Parasitol 99: 89-101.
-
(1999)
Mol Biochem Parasitol
, vol.99
, pp. 89-101
-
-
Wirtz, E.1
Leal, S.2
Ochatt, C.3
Cross, G.A.4
|