Long interspersed nucleotide element-1 hypomethylation in folate-deficient mouse embryonic stem cells

Journal of Cellular Biochemistry

Volumn 114, Issue 7, 2013, Pages 1549-1558

  Chang, Shaoyan ^a   Wang, Li ^a   Guan, Yunqian ^b   Shangguan, Shaofang ^a   Du, Qingan ^b   Wang, Yang ^b   Zhang, Ting ^a   Zhang, Yu ^b  

^a CAPITAL INSTITUTE OF PEDIATRICS   (China)

^b CAPITAL MEDICAL UNIVERSITY   (China)

Author keywords

EMBRYONIC STEM CELLS; FOLATE; HOMOCYSTEINE; LONG INTERSPERSED NUCLEOTIDE ELEMENTS; METHYLATION

Indexed keywords

FOLIC ACID; HOMOCYSTEINE;

ANIMAL CELL; ARTICLE; CARBON METABOLISM; CELL DIFFERENTIATION; CELL PROLIFERATION; CHEMOLUMINESCENCE; CONCENTRATION (PARAMETERS); CONCENTRATION RESPONSE; CONTROLLED STUDY; DNA METHYLATION; EMBRYO; EMBRYONIC STEM CELL; ENZYME LINKED IMMUNOSORBENT ASSAY; HOMEOSTASIS; IMMUNOASSAY; LONG INTERSPERSED REPEAT; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOUSE; NONHUMAN; PRIORITY JOURNAL;

ANIMALS; CELL DIFFERENTIATION; CELL PROLIFERATION; CELLS, CULTURED; DNA METHYLATION; EMBRYONIC STEM CELLS; FOLIC ACID; LONG INTERSPERSED NUCLEOTIDE ELEMENTS; MICE;

EID: 84877700841     PISSN: 07302312     EISSN: 10974644     Source Type: Journal    
DOI: 10.1002/jcb.24496     Document Type: Article

References (39)

1. Alves G, Tatro A, Fanning T,. 1996. Differential methylation of human LINE-1 retrotransposons in malignant cells. Gene 176: 39-44. (Pubitemid 26375750)
2. Becker DJ, Lowe JB,. 2003. Fucose: biosynthesis and biological function in mammals. Glycobiology 13: 41R-53R. (Pubitemid 36850123)
3. Belancio VP, Hedges DJ, Deininger P,. 2008. Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Res 18: 343-358. (Pubitemid 351347078)
4. Chambers I, Smith A,. 2004. Self-renewal of teratocarcinoma and embryonic stem cells. Oncogene 23: 7150-7160. (Pubitemid 39382149)
5. Chambers I, Colby D, Robertson M, Nichols J, Lee S, Tweedie S, Smith A,. 2003. Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 113: 643-655. (Pubitemid 36694189)
6. Chow JC, Ciaudo C, Fazzari MJ, Mise N, Servant N, Glass JL, Attreed M, Avner P, Wutz A, Barillot E, Greally JM, Voinnet O, Heard E,. 2010. LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation. Cell 141: 956-969.
7. Cravo MFP, Pereira AD, Gouveia-Oliveira A, Chaves P, Selhub J, Mason JB, Mira FC, Leitao CN,. 1994. DNA methylation as an intermediate biomarker in colorectal cancer: modulation by folic acid supplementation. Eur J Cancer Prev 473-479. (Pubitemid 24360815)
8. Cravo ML, Pinto AG, Chaves P, Cruz JA, Lage P, Nobre Leitao C, Costa Mira F,. 1998. Effect of folate supplementation on DNA methylation of rectal mucosa in patients with colonic adenomas: correlation with nutrient intake. Clin Nutr 17: 45-49. (Pubitemid 28230839)
9. Crider KS, Yang TP, Berry RJ, Bailey LB,. 2012. Folate and DNA methylation: a review of molecular mechanisms and the evidence for folate's role. Adv Nutr 3: 21-38.
10. Cruickshanks HA, Tufarelli C,. 2009. Isolation of cancer-specific chimeric transcripts induced by hypomethylation of the LINE-1 antisense promoter. Genomics 94: 397-406.
11. Fox JT, Stover PJ,. 2008. Folate-mediated one-carbon metabolism. Vitam Horm 79: 1-44.
12. Fryer AA, Emes RD, Ismail KMK, Haworth KE, Mein C, Carroll WD, Farrell WE,. 2011. Quantitative, high-resolution epigenetic profiling of CpG loci identifies associations with cord blood plasma homocysteine and birth weight in humans. Epigenetics 6: 86-94.
13. Goodier JL, Kazazian HH, Jr., 2008. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135: 23-35.
14. Han JS, Szak ST, Boeke JD,. 2004. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429: 268-274. (Pubitemid 38684807)
15. Iskow RC, McCabe MT, Mills RE, Torene S, Pittard WS, Neuwald AF, Van Meir EG, Vertino PM, Devine SE,. 2010. Natural mutagenesis of human genomes by endogenous retrotransposons. Cell 141: 1253-1261.
16. Jacob RA, Gretz DM, Taylor PC, James SJ, Pogribny IP, Miller BJ, Henning SM, Swendseid ME,. 1998. Moderate folate depletion increases plasma homocysteine and decreases lymphocyte DNA methylation in postmenopausal women. J Nutr 128: 1204-1212. (Pubitemid 28317688)
17. Jjingo D, Conley AB, Yi S, Lunyak VV, Jordan KI,. 2012. On the presence and role of human gene-body DNA methylation. Oncotarget 497: 1949-2553.
18. Kazazian HH, Jr., 2004. Mobile elements: drivers of genome evolution. Science 303: 1626-1632. (Pubitemid 38338313)
19. Kim Y-I,. 2004. Will mandatory folic acid fortification prevent or promote cancer. Am J Clin Nutr 80: 1123-1128. (Pubitemid 41350670)
20. Kim Y, Pogribny IP, Basnakian AG, Miller JW, Seihub J, James SJ, Mason JB,. 1997. Folate deficiency in rats induces DNA strand breaks and hypomethylation within the p53 tumor suppressor gene. Am J Clin Nutr 65: 46-52. (Pubitemid 27020458)
21. Kim YI, Baik HW, Fawaz K, Knox T, Lee YM, Norton R, Libby E, Mason JB,. 2001. Effects of folate supplementation on two provisional molecular markers of colon cancer: a prospective, randomized trial. Am J Gastroenterol 96: 184-195. (Pubitemid 32104827)
22. Kim K-C, Friso S, Choi S-W,. 2009. DNA methylation, an epigenetic mechanism connecting folate to healthy embryonic development and aging. J Nutr Biochem 20: 917-926.
23. Kudo T, Ikehara Y, Togayachi A, Kaneko M, Hiraga T, Sasaki K, Narimatsu H,. 1998. Expression cloning and characterization of a novel murine alpha1, 3-fucosyltransferase, mFuc-TIX, that synthesizes the Lewis x (CD15) epitope in brain and kidney. J Biol Chem 273: 26729-26738. (Pubitemid 28471689)
24. Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Totoki Y, Toyoda A, Ikawa M, Asada N, Kojima K, Yamaguchi Y, Ijiri TW, Hata K, Li E, Matsuda Y, Kimura T, Okabe M, Sakaki Y, Sasaki H, Nakano T,. 2008. DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. Genes Dev 22: 908-917. (Pubitemid 351482844)
25. Kuwabara T, Hsieh J, Muotri A, Yeo G, Warashina M, Lie DC, Moore L, Nakashima K, Asashima M, Gage FH,. 2009. Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis. Nat Neurosci 12: 1097-1105.
26. Masui S, Nakatake Y, Toyooka Y, Shimosato D, Yagi R, Takahashi K, Okochi H, Okuda A, Matoba R, Sharov AA, Ko MS, Niwa H,. 2007. Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells. Nat Cell Biol 9: 625-635. (Pubitemid 47214724)
27. Minakami R, Kurose K, Etoh K, Furuhata Y, Hattori M, Sakaki Y,. 1992. Identification of an internal cis-element essential for the human L1 transcription and a nuclear factor(s) binding to the element. Nucleic Acids Res 20: 3139-3145.
28. Jin MJ, Kawakami K, Fukui Y, Tsukioka S, Oda M, Watanabe G, Takechi T, Oka T, Minamoto T,. 2009. Different histological types of non-small cell lung cancer have distinct folate and DNA methylation level. Cancer Sci 100: 2325-2330.
29. Muramatsu T, Muramatsu H,. 2004. Carbohydrate antigens expressed on stem cells and early embryonic cells. Glycoconj J 21: 41-45. (Pubitemid 39360739)
30. Niwa H, Miyazaki J, Smith AG,. 2000. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat Genet 24: 372-376. (Pubitemid 30187435)
31. Perepelitsa-Belancio V, Deininger P,. 2003. RNA truncation by premature polyadenylation attenuates human mobile element activity. Nat Genet 35: 363-366. (Pubitemid 37486920)
32. Pogribny IP, B AG, Miller BJ, Pogribny IP, Basnakian AG, Miller BJ, Lopatina NG, Poirier LA, James SJ,. 1995. Breaks in genomic DNA and within the p53 gene are associated with hypomethylation in livers of folate/methyl deficient rats. Cancer Res 55: 1894-1901.
33. Rampersaud GC, Kauwell GP, Hutson AD, Cerda JJ, Bailey LB,. 2000. Genomic DNA methylation decreases in response to moderate folate depletion in elderly women. Am J Clin Nutr 72: 998-1003.
34. Schernhammer ES, Giovannucci E, Kawasaki T, Rosner B, Fuchs CS, Ogino S,. 2009. Dietary folate, alcohol and B vitamins in relation to LINE-1 hypomethylation in colon cancer. Gut 59: 794-799.
35. Staudacher E, Altmann F, Wilson IB, Marz L,. 1999. Fucose in N-glycans: from plant to man. Biochim Biophys Acta 1473: 216-236.
36. Swergold GD,. 1990. Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol Cell Biol 10: 6718-6729. (Pubitemid 120004617)
37. Tchenio T, Casella JF, Heidmann T,. 2000. Members of the SRY family regulate the human LINE retrotransposons. Nucleic Acids Res 28: 411-415. (Pubitemid 30057978)
38. Wang L, Wang F, Guan J, Le J, Wu L, Zou J, Zhao H, Pei L, Zheng X, Zhang T,. 2010. Relation between hypomethylation of long interspersed nucleotide elements and risk of neural tube defects. Am J Clin Nutr 91: 1359-1367.
39. Yang N, Zhang L, Zhang Y, Kazazian HH, Jr., 2003. An important role for RUNX3 in human L1 transcription and retrotransposition. Nucleic Acids Res 31: 4929-4940. (Pubitemid 37441858)