-
1
-
-
63649133278
-
AIM2 recognizes cytosolic dsDNA and forms a caspase-1-activating inflammasome with ASC
-
Hornung, V., Ablasser, A., Charrel-Dennis, M., Bauernfeind, F., Horvath, G., Caffrey, D. R., Latz, E., and Fitzgerald, K. A. (2009) AIM2 recognizes cytosolic dsDNA and forms a caspase-1-activating inflammasome with ASC. Nature 458, 514-518
-
(2009)
Nature
, vol.458
, pp. 514-518
-
-
Hornung, V.1
Ablasser, A.2
Charrel-Dennis, M.3
Bauernfeind, F.4
Horvath, G.5
Caffrey, D.R.6
Latz, E.7
Fitzgerald, K.A.8
-
2
-
-
63649145255
-
AIM2 activates the inflammasome and cell death in response to cytoplasmic DNA
-
Fernandes-Alnemri, T., Yu, J.-W., Datta, P., Wu, J., and Alnemri, E. S. (2009) AIM2 activates the inflammasome and cell death in response to cytoplasmic DNA. Nature 458, 509-513
-
(2009)
Nature
, vol.458
, pp. 509-513
-
-
Fernandes-Alnemri, T.1
Yu, J.-W.2
Datta, P.3
Wu, J.4
Alnemri, E.S.5
-
3
-
-
60749104535
-
HIN-200 proteins regulate caspase activation in response to foreign cytoplasmic DNA
-
Roberts, T. L., Idris, A., Dunn, J. A., Kelly, G. M., Burnton, C. M., Hodgson, S., Hardy, L. L., Garceau, V., Sweet, M. J., Ross, I. L., Hume, D. A., and Stacey, K. J. (2009) HIN-200 proteins regulate caspase activation in response to foreign cytoplasmic DNA. Science 323, 1057-1060
-
(2009)
Science
, vol.323
, pp. 1057-1060
-
-
Roberts, T.L.1
Idris, A.2
Dunn, J.A.3
Kelly, G.M.4
Burnton, C.M.5
Hodgson, S.6
Hardy, L.L.7
Garceau, V.8
Sweet, M.J.9
Ross, I.L.10
Hume, D.A.11
Stacey, K.J.12
-
4
-
-
60749136484
-
An orthogonal proteomic-genomic screen identifies AIM2 as a cytoplasmicDNAsensor for the inflammasome
-
Bürckstümmer, T., Baumann, C., Blüml, S., Dixit, E., Dürnberger, G., Jahn, H., Planyavsky, M., Bilban, M., Colinge, J., Bennett, K. L., and Superti-Furga, G. (2009) An orthogonal proteomic-genomic screen identifies AIM2 as a cytoplasmicDNAsensor for the inflammasome. Nat. Immunol. 10, 266-272
-
(2009)
Nat. Immunol
, vol.10
, pp. 266-272
-
-
Bürckstümmer, T.1
Baumann, C.2
Blüml, S.3
Dixit, E.4
Dürnberger, G.5
Jahn, H.6
Planyavsky, M.7
Bilban, M.8
Colinge, J.9
Bennett, K.L.10
Superti-Furga, G.11
-
5
-
-
77951269392
-
The AIM2 inflammasome is essential for host defense against cytosolic bacteria and DNA viruses
-
Rathinam, V. A., Jiang, Z., Waggoner, S. N., Sharma, S., Cole, L. E., Waggoner, L., Vanaja, S. K., Monks, B. G., Ganesan, S., Latz, E., Hornung, V., Vogel, S. N., Szomolanyi-Tsuda, E., and Fitzgerald, K. A. (2010) The AIM2 inflammasome is essential for host defense against cytosolic bacteria and DNA viruses. Nat. Immunol. 11, 395-402
-
(2010)
Nat. Immunol
, vol.11
, pp. 395-402
-
-
Rathinam, V.A.1
Jiang, Z.2
Waggoner, S.N.3
Sharma, S.4
Cole, L.E.5
Waggoner, L.6
Vanaja, S.K.7
Monks, B.G.8
Ganesan, S.9
Latz, E.10
Hornung, V.11
Vogel, S.N.12
Szomolanyi-Tsuda, E.13
Fitzgerald, K.A.14
-
6
-
-
77951263260
-
The AIM2 inflammasome is critical for innate immunity to Francisella tularensis
-
Fernandes-Alnemri, T., Yu, J.-W., Juliana, C., Solorzano, L., Kang, S., Wu, J., Datta, P., McCormick, M., Huang, L., McDermott, E., Eisenlohr, L., Landel, C. P., and Alnemri, E. S. (2010) The AIM2 inflammasome is critical for innate immunity to Francisella tularensis. Nat. Immunol. 11, 385-393
-
(2010)
Nat. Immunol
, vol.11
, pp. 385-393
-
-
Fernandes-Alnemri, T.1
Yu, J.-W.2
Juliana, C.3
Solorzano, L.4
Kang, S.5
Wu, J.6
Datta, P.7
McCormick, M.8
Huang, L.9
McDermott, E.10
Eisenlohr, L.11
Landel, C.P.12
Alnemri, E.S.13
-
7
-
-
77955294800
-
Listeria monocytogenes triggers AIM2-mediated pyroptosis upon infrequent bacteriolysis in the macrophage cytosol
-
Sauer, J.-D., Witte, C. E., Zemansky, J., Hanson, B., Lauer, P., and Portnoy, D. A. (2010) Listeria monocytogenes triggers AIM2-mediated pyroptosis upon infrequent bacteriolysis in the macrophage cytosol. Cell Host Microbe 7, 412-419
-
(2010)
Cell Host Microbe
, vol.7
, pp. 412-419
-
-
Sauer, J.-D.1
Witte, C.E.2
Zemansky, J.3
Hanson, B.4
Lauer, P.5
Portnoy, D.A.6
-
8
-
-
77953305895
-
Listeria monocytogenes is sensed by the NLRP3 and AIM2 inflammasome
-
Kim, S., Bauernfeind, F., Ablasser, A., Hartmann, G., Fitzgerald, K. A., Latz, E., and Hornung, V. (2010) Listeria monocytogenes is sensed by the NLRP3 and AIM2 inflammasome. Eur. J. Immunol. 40, 1545-1551
-
(2010)
Eur. J. Immunol
, vol.40
, pp. 1545-1551
-
-
Kim, S.1
Bauernfeind, F.2
Ablasser, A.3
Hartmann, G.4
Fitzgerald, K.A.5
Latz, E.6
Hornung, V.7
-
9
-
-
84859945146
-
Preventing bacterial DNA release and absent in melanoma 2 inflammasome activation by a Legionella effector functioning in membrane trafficking
-
Ge, J., Gong, Y.-N., Xu, Y., and Shao, F. (2012) Preventing bacterial DNA release and absent in melanoma 2 inflammasome activation by a Legionella effector functioning in membrane trafficking. Proc. Natl. Acad. Sci. U.S.A. 109, 6193-6198
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 6193-6198
-
-
Ge, J.1
Gong, Y.-N.2
Xu, Y.3
Shao, F.4
-
10
-
-
79955897768
-
Cytosolic DNA triggers inflammasome activation in keratinocytes in psoriatic lesions
-
Dombrowski, Y., Peric, M., Koglin, S., Kammerbauer, C., Göss, C., Anz, D., Simanski, M., Gläser, R., Harder, J., Hornung, V., Gallo, R. L., Ruzicka, T., Besch, R., and Schauber, J. (2011) Cytosolic DNA triggers inflammasome activation in keratinocytes in psoriatic lesions. Sci. Transl. Med. 3, 82ra38
-
(2011)
Sci. Transl. Med
, vol.3
-
-
Dombrowski, Y.1
Peric, M.2
Koglin, S.3
Kammerbauer, C.4
Göss, C.5
Anz, D.6
Simanski, M.7
Gläser, R.8
Harder, J.9
Hornung, V.10
Gallo, R.L.11
Ruzicka, T.12
Besch, R.13
Schauber, J.14
-
11
-
-
77958140656
-
IFI16 is an innate immune sensor for intracellular DNA
-
Unterholzner, L., Keating, S. E., Baran, M., Horan, K. A., Jensen, S. B., Sharma, S., Sirois, C. M., Jin, T., Latz, E., Xiao, T. S., Fitzgerald, K. A., Paludan, S. R., and Bowie, A. G. (2010) IFI16 is an innate immune sensor for intracellular DNA. Nat. Immunol. 11, 997-1004
-
(2010)
Nat. Immunol
, vol.11
, pp. 997-1004
-
-
Unterholzner, L.1
Keating, S.E.2
Baran, M.3
Horan, K.A.4
Jensen, S.B.5
Sharma, S.6
Sirois, C.M.7
Jin, T.8
Latz, E.9
Xiao, T.S.10
Fitzgerald, K.A.11
Paludan, S.R.12
Bowie, A.G.13
-
12
-
-
22144490446
-
The HIN-200 family: More than interferon-inducible genes?
-
Ludlow, L. E., Johnstone, R. W., and Clarke, C. J. (2005) The HIN-200 family: more than interferon-inducible genes? Exp. Cell Res. 308, 1-17
-
(2005)
Exp. Cell Res.
, vol.308
, pp. 1-17
-
-
Ludlow, L.E.1
Johnstone, R.W.2
Clarke, C.J.3
-
13
-
-
84860202518
-
A comprehensive manually curated protein-protein interaction database for the death domain superfamily
-
Kwon, D., Yoon, J. H., Shin, S. Y., Jang, T. H., Kim, H. G., So, I., Jeon, J. H., and Park, H. H. (2012) A comprehensive manually curated protein-protein interaction database for the death domain superfamily. Nucleic Acids Res. 40, D331-D336
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kwon, D.1
Yoon, J.H.2
Shin, S.Y.3
Jang, T.H.4
Kim, H.G.5
So, I.6
Jeon, J.H.7
Park, H.H.8
-
14
-
-
84864755627
-
The mammalian PYHIN gene family: Phylogeny, evolution and expression
-
Cridland, J. A., Curley, E. Z., Wykes, M. N., Schroder, K., Sweet, M. J., Roberts, T. L., Ragan, M. A., Kassahn, K. S., and Stacey, K. J. (2012) The mammalian PYHIN gene family: phylogeny, evolution and expression. BMC Evol. Biol. 12, 140
-
(2012)
BMC Evol. Biol
, vol.12
, pp. 140
-
-
Cridland, J.A.1
Curley, E.Z.2
Wykes, M.N.3
Schroder, K.4
Sweet, M.J.5
Roberts, T.L.6
Ragan, M.A.7
Kassahn, K.S.8
Stacey, K.J.9
-
15
-
-
0034520137
-
The PYRIN domain: A novel motif found in apoptosis and inflammation proteins
-
Bertin, J., and DiStefano, P. S. (2000) The PYRIN domain: a novel motif found in apoptosis and inflammation proteins. Cell Death Differ. 7, 1273-1274
-
(2000)
Cell Death Differ
, vol.7
, pp. 1273-1274
-
-
Bertin, J.1
Distefano, P.S.2
-
16
-
-
0035916324
-
The pyrin domain: A possible member of the death domain-fold family implicated in apoptosis and inflammation
-
Martinon, F., Hofmann, K., and Tschopp, J. (2001) The pyrin domain: a possible member of the death domain-fold family implicated in apoptosis and inflammation. Curr. Biol. 11, R118-20
-
(2001)
Curr. Biol
, vol.11
-
-
Martinon, F.1
Hofmann, K.2
Tschopp, J.3
-
17
-
-
0035253022
-
The DAPIN family: A novel domain links apoptotic and interferon response proteins
-
Staub, E., Dahl, E., and Rosenthal, A. (2001) The DAPIN family: a novel domain links apoptotic and interferon response proteins. Trends Biochem. Sci. 26, 83-85
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 83-85
-
-
Staub, E.1
Dahl, E.2
Rosenthal, A.3
-
18
-
-
0035253123
-
PAAD-A new protein domain associated with apoptosis, cancer and autoimmune diseases
-
Pawłowski, K., Pio, F., Chu, Z., Reed, J. C., and Godzik, A. (2001) PAAD-a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem. Sci. 26, 85-87
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 85-87
-
-
Pawłowski, K.1
Pio, F.2
Chu, Z.3
Reed, J.C.4
Godzik, A.5
-
19
-
-
0034857603
-
The PYRIN domain: A member of the death domain-fold superfamily
-
Fairbrother, W. J., Gordon, N. C., Humke, E. W., O'Rourke, K. M., Starovasnik, M. A., Yin, J. P., and Dixit, V. M. (2001) The PYRIN domain: a member of the death domain-fold superfamily. Protein Sci. 10, 1911-1918
-
(2001)
Protein Sci
, vol.10
, pp. 1911-1918
-
-
Fairbrother, W.J.1
Gordon, N.C.2
Humke, E.W.3
O'Rourke, K.M.4
Starovasnik, M.A.5
Yin, J.P.6
Dixit, V.M.7
-
20
-
-
33846702221
-
Death domain assembly mechanism revealed by crystal structure of the oligomeric PIDDosome core complex
-
Park, H. H., Logette, E., Raunser, S., Cuenin, S., Walz, T., Tschopp, J., and Wu, H. (2007) Death domain assembly mechanism revealed by crystal structure of the oligomeric PIDDosome core complex. Cell 128, 533-546
-
(2007)
Cell
, vol.128
, pp. 533-546
-
-
Park, H.H.1
Logette, E.2
Raunser, S.3
Cuenin, S.4
Walz, T.5
Tschopp, J.6
Wu, H.7
-
21
-
-
77953714711
-
Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling
-
Lin, S.-C., Lo, Y.-C., and Wu, H. (2010) Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling. Nature 465, 885-890
-
(2010)
Nature
, vol.465
, pp. 885-890
-
-
Lin, S.-C.1
Lo, Y.-C.2
Wu, H.3
-
22
-
-
0036187036
-
Three-dimensional structure of the apoptosome: Implications for assembly, procaspase-9 binding, and activation
-
Acehan, D., Jiang, X., Morgan, D. G., Heuser, J. E., Wang, X., and Akey, C. W. (2002) Three-dimensional structure of the apoptosome: implications for assembly, procaspase-9 binding, and activation. Mol. Cell 9, 423-432
-
(2002)
Mol. Cell
, vol.9
, pp. 423-432
-
-
Acehan, D.1
Jiang, X.2
Morgan, D.G.3
Heuser, J.E.4
Wang, X.5
Akey, C.W.6
-
23
-
-
77951881456
-
Crystal structure of the Caenorhabditis elegans apoptosome reveals an octameric assembly of CED-4
-
Qi, S., Pang, Y., Hu, Q., Liu, Q., Li, H., Zhou, Y., He, T., Liang, Q., Liu, Y., Yuan, X., Luo, G., Li, H., Wang, J., Yan, N., and Shi, Y. (2010) Crystal structure of the Caenorhabditis elegans apoptosome reveals an octameric assembly of CED-4. Cell 141, 446-457
-
(2010)
Cell
, vol.141
, pp. 446-457
-
-
Qi, S.1
Pang, Y.2
Hu, Q.3
Liu, Q.4
Li, H.5
Zhou, Y.6
He, T.7
Liang, Q.8
Liu, Y.9
Yuan, X.10
Luo, G.11
Li, H.12
Wang, J.13
Yan, N.14
Shi, Y.15
-
24
-
-
0036671894
-
The inflammasome: A molecular platform triggering activation of inflammatory caspases and processing of proIL-β
-
Martinon, F., Burns, K., and Tschopp, J. (2002) The inflammasome: a molecular platform triggering activation of inflammatory caspases and processing of proIL-β. Mol. Cell 10, 417-426
-
(2002)
Mol. Cell
, vol.10
, pp. 417-426
-
-
Martinon, F.1
Burns, K.2
Tschopp, J.3
-
25
-
-
0042386425
-
The death-domain fold of the ASC PYRIN domain, presenting a basis for PYRIN/PYRIN recognition
-
Liepinsh, E., Barbals, R., Dahl, E., Sharipo, A., Staub, E., and Otting, G. (2003) The death-domain fold of the ASC PYRIN domain, presenting a basis for PYRIN/PYRIN recognition. J. Mol. Biol. 332, 1155-1163
-
(2003)
J. Mol. Biol
, vol.332
, pp. 1155-1163
-
-
Liepinsh, E.1
Barbals, R.2
Dahl, E.3
Sharipo, A.4
Staub, E.5
Otting, G.6
-
26
-
-
70450250064
-
Structure and interdomain dynamics of apoptosis-associated speck-like protein containing a CARD (ASC)
-
de Alba, E. (2009) Structure and interdomain dynamics of apoptosis-associated speck-like protein containing a CARD (ASC). J. Biol. Chem. 284, 32932-32941
-
(2009)
J. Biol. Chem
, vol.284
, pp. 32932-32941
-
-
De Alba, E.1
-
27
-
-
0141817846
-
NMR structure of the apoptosis-and inflammation-related NALP1 pyrin domain
-
Hiller, S., Kohl, A., Fiorito, F., Herrmann, T., Wider, G., Tschopp, J., Grütter, M. G., and Wüthrich, K. (2003) NMR structure of the apoptosis-and inflammation-related NALP1 pyrin domain. Structure 11, 1199-1205
-
(2003)
Structure
, vol.11
, pp. 1199-1205
-
-
Hiller, S.1
Kohl, A.2
Fiorito, F.3
Herrmann, T.4
Wider, G.5
Tschopp, J.6
Grütter, M.G.7
Wüthrich, K.8
-
28
-
-
80655144737
-
Crystal structure of NALP3 protein pyrin domain (PYD) and its implications in inflammasome assembly
-
Bae, J. Y., and Park, H. H. (2011) Crystal structure of NALP3 protein pyrin domain (PYD) and its implications in inflammasome assembly. J. Biol. Chem. 286, 39528-39536
-
(2011)
J. Biol. Chem
, vol.286
, pp. 39528-39536
-
-
Bae, J.Y.1
Park, H.H.2
-
29
-
-
84866386287
-
Structural and functional analysis of the NLRP4 pyrin domain
-
Eibl, C., Grigoriu, S., Hessenberger, M., Wenger, J., Puehringer, S., Pinheiro, A. S., Wagner, R. N., Proell, M., Reed, J. C., Page, R., Diederichs, K., and Peti, W. (2012) Structural and functional analysis of the NLRP4 pyrin domain. Biochemistry 51, 7330-7341
-
(2012)
Biochemistry
, vol.51
, pp. 7330-7341
-
-
Eibl, C.1
Grigoriu, S.2
Hessenberger, M.3
Wenger, J.4
Puehringer, S.5
Pinheiro, A.S.6
Wagner, R.N.7
Proell, M.8
Reed, J.C.9
Page, R.10
Diederichs, K.11
Peti, W.12
-
30
-
-
77956254738
-
Three-dimensional structure of the NLRP7 pyrin domain: Insight into pyrin-pyrin-mediated effector domain signaling in innate immunity
-
Pinheiro, A. S., Proell, M., Eibl, C., Page, R., Schwarzenbacher, R., and Peti, W. (2010) Three-dimensional structure of the NLRP7 pyrin domain: insight into pyrin-pyrin-mediated effector domain signaling in innate immunity. J. Biol. Chem. 285, 27402-27410
-
(2010)
J. Biol. Chem
, vol.285
, pp. 27402-27410
-
-
Pinheiro, A.S.1
Proell, M.2
Eibl, C.3
Page, R.4
Schwarzenbacher, R.5
Peti, W.6
-
31
-
-
80054849114
-
The NLRP12 pyrin domain: Structure, dynamics, and functional insights
-
Pinheiro, A. S., Eibl, C., Ekman-Vural, Z., Schwarzenbacher, R., and Peti, W. (2011) The NLRP12 pyrin domain: structure, dynamics, and functional insights. J. Mol. Biol. 413, 790-803
-
(2011)
J. Mol. Biol
, vol.413
, pp. 790-803
-
-
Pinheiro, A.S.1
Eibl, C.2
Ekman-Vural, Z.3
Schwarzenbacher, R.4
Peti, W.5
-
32
-
-
33845966052
-
Structure and dynamics of ASC2, a pyrin domain-only protein that regulates inflammatory signaling
-
Natarajan, A., Ghose, R., and Hill, J. M. (2006) Structure and dynamics of ASC2, a pyrin domain-only protein that regulates inflammatory signaling. J. Biol. Chem. 281, 31863-31875
-
(2006)
J. Biol. Chem
, vol.281
, pp. 31863-31875
-
-
Natarajan, A.1
Ghose, R.2
Hill, J.M.3
-
33
-
-
80053337957
-
The death-fold superfamily of homotypic interaction motifs
-
Kersse, K., Verspurten, J., Vanden Berghe, T., and Vandenabeele, P. (2011) The death-fold superfamily of homotypic interaction motifs. Trends Biochem. Sci. 36, 541-552
-
(2011)
Trends Biochem. Sci
, vol.36
, pp. 541-552
-
-
Kersse, K.1
Verspurten, J.2
Vanden Berghe, T.3
Vandenabeele, P.4
-
34
-
-
84859986329
-
Structures of the HIN domain:DNA complexes reveal ligand binding and activation mechanisms of the AIM2 inflammasome and IFI16 receptor
-
Jin, T., Perry, A., Jiang, J., Smith, P., Curry, J. A., Unterholzner, L., Jiang, Z., Horvath, G., Rathinam, V. A., Johnstone, R. W., Hornung, V., Latz, E., Bowie, A. G., Fitzgerald, K. A., and Xiao, T. S. (2012) Structures of the HIN domain:DNA complexes reveal ligand binding and activation mechanisms of the AIM2 inflammasome and IFI16 receptor. Immunity 36, 561-571
-
(2012)
Immunity
, vol.36
, pp. 561-571
-
-
Jin, T.1
Perry, A.2
Jiang, J.3
Smith, P.4
Curry, J.A.5
Unterholzner, L.6
Jiang, Z.7
Horvath, G.8
Rathinam, V.A.9
Johnstone, R.W.10
Hornung, V.11
Latz, E.12
Bowie, A.G.13
Fitzgerald, K.A.14
Xiao, T.S.15
-
35
-
-
52949130645
-
Structure of a signal transduction regulator, RACK1, from Arabidopsis thaliana
-
Ullah, H., Scappini, E. L., Moon, A. F., Williams, L. V., Armstrong, D. L., and Pedersen, L. C. (2008) Structure of a signal transduction regulator, RACK1, from Arabidopsis thaliana. Protein Science 17, 1771-1780
-
(2008)
Protein Science
, vol.17
, pp. 1771-1780
-
-
Ullah, H.1
Scappini, E.L.2
Moon, A.F.3
Williams, L.V.4
Armstrong, D.L.5
Pedersen, L.C.6
-
36
-
-
77951587361
-
A synergistic approach to protein crystallization: Combination of a fixedarm carrier with surface entropy reduction
-
Moon, A. F., Mueller, G. A., Zhong, X., and Pedersen, L. C. (2010) A synergistic approach to protein crystallization: combination of a fixedarm carrier with surface entropy reduction. Protein Sci. 19, 901-913
-
(2010)
Protein Sci
, vol.19
, pp. 901-913
-
-
Moon, A.F.1
Mueller, G.A.2
Zhong, X.3
Pedersen, L.C.4
-
37
-
-
0031059866
-
Processing of x-ray diffraction data
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data. Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
38
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674
-
(2007)
J. Appl. Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
39
-
-
0037779018
-
A graphical user interface to the CCP4 program suite
-
Potterton, E., Briggs, P., Turkenburg, M., and Dodson, E. (2003) A graphical user interface to the CCP4 program suite. Acta Crystallogr. D Biol. Crystallogr. 59, 1131-1137
-
(2003)
Acta Crystallogr. D Biol. Crystallogr
, vol.59
, pp. 1131-1137
-
-
Potterton, E.1
Briggs, P.2
Turkenburg, M.3
Dodson, E.4
-
41
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L.-W., Kapral, G. J., Grosse-Kunstleve, R. W., Mc-Coy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.-W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
Mc-Coy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
42
-
-
74549178560
-
Mol probity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) Mol Probity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
43
-
-
16644393507
-
Automated and accurate deposition of structures solved by x-ray diffraction to the Protein Data Bank
-
Yang, H., Guranovic, V., Dutta, S., Feng, Z., Berman, H. M., and Westbrook, J. D. (2004) Automated and accurate deposition of structures solved by x-ray diffraction to the Protein Data Bank. Acta Crystallogr. D Biol. Crystallogr. 60, 1833-1839
-
(2004)
Acta Crystallogr. D Biol. Crystallogr
, vol.60
, pp. 1833-1839
-
-
Yang, H.1
Guranovic, V.2
Dutta, S.3
Feng, Z.4
Berman, H.M.5
Westbrook, J.D.6
-
44
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig, B., and Nicholls, A. (1995) Classical electrostatics in biology and chemistry. Science 268, 1144-1149
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
45
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B., and Richards, F. M. (1971) The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55, 379-400
-
(1971)
J. Mol. Biol
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
46
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739
-
(2011)
Mol. Biol. Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
47
-
-
77954257799
-
Con-Surf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
Ashkenazy, H., Erez, E., Martz, E., Pupko, T., and Ben-Tal, N. (2010) Con-Surf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38, W529-W533
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
48
-
-
77957963055
-
Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19
-
Kozakov, D., Hall, D. R., Beglov, D., Brenke, R., Comeau, S. R., Shen, Y., Li, K., Zheng, J., Vakili, P., Paschalidis, I. Ch., and Vajda, S. (2010) Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19. Proteins 78, 3124-3130
-
(2010)
Proteins
, vol.78
, pp. 3124-3130
-
-
Kozakov, D.1
Hall, D.R.2
Beglov, D.3
Brenke, R.4
Comeau, S.R.5
Shen, Y.6
Li, K.7
Zheng, J.8
Vakili, P.9
Paschalidis, C.I.10
Vajda, S.11
-
49
-
-
77957242885
-
Ultra-fast FFT protein docking on graphics processors
-
Ritchie, D. W., and Venkatraman, V. (2010) Ultra-fast FFT protein docking on graphics processors. Bioinformatics 26, 2398-2405
-
(2010)
Bioinformatics
, vol.26
, pp. 2398-2405
-
-
Ritchie, D.W.1
Venkatraman, V.2
-
50
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman, B., Dantas, G., Ireton, G. C., Varani, G., Stoddard, B. L., and Baker, D. (2003) Design of a novel globular protein fold with atomic-level accuracy. Science 302, 1364-1368
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
51
-
-
41849132440
-
Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain
-
Potter, J. A., Randall, R. E., and Taylor, G. L. (2008) Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain. BMC Struct. Biol. 8, 11
-
(2008)
BMC Struct. Biol
, vol.8
, pp. 11
-
-
Potter, J.A.1
Randall, R.E.2
Taylor, G.L.3
-
52
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L., and Rosenström, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Holm, L.1
Rosenström, P.2
-
53
-
-
29144463250
-
Crystal structure of MC159 reveals molecular mechanism of DISC assembly and FLIP inhibition
-
Yang, J. K., Wang, L., Zheng, L., Wan, F., Ahmed, M., Lenardo, M. J., and Wu, H. (2005) Crystal structure of MC159 reveals molecular mechanism of DISC assembly and FLIP inhibition. Mol. Cell 20, 939-949
-
(2005)
Mol. Cell
, vol.20
, pp. 939-949
-
-
Yang, J.K.1
Wang, L.2
Zheng, L.3
Wan, F.4
Ahmed, M.5
Lenardo, M.J.6
Wu, H.7
-
54
-
-
0033542482
-
Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1
-
Qin, H., Srinivasula, S. M., Wu, G., Fernandes-Alnemri, T., Alnemri, E. S., and Shi, Y. (1999) Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1. Nature 399, 549-557
-
(1999)
Nature
, vol.399
, pp. 549-557
-
-
Qin, H.1
Srinivasula, S.M.2
Wu, G.3
Fernandes-Alnemri, T.4
Alnemri, E.S.5
Shi, Y.6
-
55
-
-
0032580153
-
NMRstructure and mutagenesis of the FADD (Mort1) death-effector domain
-
Eberstadt, M., Huang, B., Chen, Z., Meadows, R. P., Ng, S. C., Zheng, L., Lenardo, M. J., and Fesik, S. W. (1998)NMRstructure and mutagenesis of the FADD (Mort1) death-effector domain. Nature 392, 941-945
-
(1998)
Nature
, vol.392
, pp. 941-945
-
-
Eberstadt, M.1
Huang, B.2
Chen, Z.3
Meadows, R.P.4
Ng, S.C.5
Zheng, L.6
Lenardo, M.J.7
Fesik, S.W.8
-
56
-
-
0035896406
-
Adocking model of key components of the DISC complex: Death domain superfamily interactions redefined
-
Weber, C. H., and Vincenz, C. (2001)Adocking model of key components of the DISC complex: death domain superfamily interactions redefined. FEBS Lett. 492, 171-176
-
(2001)
FEBS Lett.
, vol.492
, pp. 171-176
-
-
Weber, C.H.1
Vincenz, C.2
-
57
-
-
0033601077
-
Threedimensional structure of a complex between the death domains of Pelle and Tube
-
Xiao, T., Towb, P., Wasserman, S. A., and Sprang, S. R. (1999) Threedimensional structure of a complex between the death domains of Pelle and Tube. Cell 99, 545-555
-
(1999)
Cell
, vol.99
, pp. 545-555
-
-
Xiao, T.1
Towb, P.2
Wasserman, S.A.3
Sprang, S.R.4
-
58
-
-
84865753053
-
Crystallographic characterization of mouse AIM2 HIN-200 domain bound to a 15 bp and an 18 bp doublestranded DNA
-
Sung, M. W., Watts, T., and Li, P. (2012) Crystallographic characterization of mouse AIM2 HIN-200 domain bound to a 15 bp and an 18 bp doublestranded DNA. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 68, 1081-1084
-
(2012)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun
, vol.68
, pp. 1081-1084
-
-
Sung, M.W.1
Watts, T.2
Li, P.3
-
59
-
-
80054703126
-
Structural basis for the activation of innate immune pattern-recognition receptor RIG-I by viral RNA
-
Kowalinski, E., Lunardi, T., McCarthy, A. A., Louber, J., Brunel, J., Grigorov, B., Gerlier, D., and Cusack, S. (2011) Structural basis for the activation of innate immune pattern-recognition receptor RIG-I by viral RNA. Cell 147, 423-435
-
(2011)
Cell
, vol.147
, pp. 423-435
-
-
Kowalinski, E.1
Lunardi, T.2
McCarthy, A.A.3
Louber, J.4
Brunel, J.5
Grigorov, B.6
Gerlier, D.7
Cusack, S.8
-
60
-
-
17244368276
-
Structure of the apoptotic protease-activating factor 1 bound to ADP
-
Riedl, S. J., Li, W., Chao, Y., Schwarzenbacher, R., and Shi, Y. (2005) Structure of the apoptotic protease-activating factor 1 bound to ADP. Nature 434, 926-933
-
(2005)
Nature
, vol.434
, pp. 926-933
-
-
Riedl, S.J.1
Li, W.2
Chao, Y.3
Schwarzenbacher, R.4
Shi, Y.5
|