Evaluating the challenges associated with time-of-fight secondary ion mass spectrometry for metabolomics using pure and mixed metabolites

Metabolomics

Volumn 9, Issue 3, 2013, Pages 535-544

  Fletcher, John S ^a   Kotze, Helen L ^b   Armitage, Emily G ^b   Lockyer, Nicholas P ^c   Vickerman, John C ^b  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Matrix effects; Metabolite; Metabolomics; MSMS; Secondary ion mass spectrometry; ToF SIMS

Indexed keywords

ARTICLE; CONTROLLED STUDY; DESORPTION; IONIZATION; LIQUID CHROMATOGRAPHY; MASS FRAGMENTOGRAPHY; MASS SPECTROMETRY; METABOLITE; METABOLOMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; RADIATION BEAM; TANDEM MASS SPECTROMETRY; TIME OF FLIGHT MASS SPECTROMETRY;

EID: 84877610108     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-012-0487-4     Document Type: Article

References (41)

1. Armitage, E. G., et al. (2012). Time-of-flight SIMS as a novel approach to unlocking the hypoxic properties of cancer. Surface and Interface Analysis,. doi: 10. 1002/sia. 5050.
2. Breitenstein, D., Rommel, C. E., Stolwijk, J., Wegener, J., & Hagenhoff, B. (2008). The chemical composition of animal cells reconstructed from 2D and 3D ToF-SIMS analysis. Applied Surface Science, 255, 1249-1256. doi: 10. 1002/anie. 200604468.
3. Brison, J., Benoit, D. S. W., Muramoto, S., Robinson, M., Stayton, P. S., & Castner, D. G. (2011). ToF-SIMS imaging and depth profiling of HeLa cells treated with bromodeoxyuridine. Surface and Interface Analysis, 43, 354-357. doi: 10. 1002/sia. 3415.
4. Brunelle, A., Touboul, D., & Laprévote, O. (2005). Biological tissue imaging with time-of-flight secondary ion mass spectrometry and cluster ion sources. Journal of Mass Spectrometry, 40, 985-999. doi: 10. 1002/jms. 902.
5. Cappiello, A., Famiglini, G., Palma, P., Pierini, E., Termopoli, V., & Trufelli, H. (2010). Direct-EI in LC-MS: Towards a universal detector for small-molecule applications. Mass Spectrometry Reviews, 30, 1242-1255. doi: 10. 1002/mas. 20329.
6. Caprioli, R. M., Farmer, T. B., & Gile, J. (1997). Molecular imaging of biological samples: Localization of peptides and proteins using MALDI-TOF MS. Analytical Chemistry, 69, 4751-4760. doi: 10. 1021/ac970888i.
7. Carado, A., Passarelli, M. K., Kozole, J., Wingate, J. E., Winograd, N., & Loboda, A. V. (2008). C60 secondary ion mass spectrometry with a hybrid-quadrupole orthogonal time-of-flight mass spectrometer. Analytical Chemistry, 80, 7921-7929. doi: 10. 1021/ac801712s.
8. Davies, N., Weibel, D. E., Blenkinsopp, P., Lockyer, N., Hill, R., & Vickerman, J. C. (2003). Development and experimental application of a gold liquid metal ion source. Applied Surface Science, 203-204, 223-227. doi: 10. 1016/S0169-4332(02)00631-1.
9. Fiehn, O., et al. (2007). The metabolomics standards initiative (MSI). Metabolomics, 3, 175-178. doi: 10. 1007/s11306-007-0070-6.
10. Fletcher, J. S. (2009). Cellular imaging with secondary ion mass spectrometry. Analyst, 134, 2204-2215. doi: 10. 1039/b913575h.
11. Fletcher, J. S., Henderson, A., Biddulph, G. X., Vaidyanathan, S., Lockyer, N. P., & Vickerman, J. C. (2008a). Uncovering new challenges in bio-analysis with ToF-SIMS. Applied Surface Science, 255, 1264-1270. doi: 10. 1016/j. apsusc. 2008. 05. 253.
12. Fletcher, J. S., Lockyer, N. P., Vaidyanathan, S., & Vickerman, J. C. (2007). TOF-SIMS 3D biomolecular imaging of Xenopus laevis oocytes using buckminsterfullerene (C60) primary ions. Analytical Chemistry, 79, 2199-2206. doi: 10. 1021/ac061370u.
13. Fletcher, J. S., Lockyer, N. P., & Vickerman, J. C. (2011). Developments in molecular SIMS depth profiling and 3D imaging of biological systems using polyatomic primary ions. Mass Spectrometry Reviews, 30, 142-174. doi: 10. 1002/mas. 20275.
14. Fletcher, J. S., et al. (2008b). A new dynamic in mass spectral imaging of single biological cells. Analytical Chemistry, 80, 9058-9064. doi: 10. 1021/ac8015278.
15. Garrison, B. J., & Postawa, Z. (2008). Computational view of surface based organic mass spectrometry. Mass Spectrometry Reviews, 27, 289-315. doi: 10. 1002/mas. 20165.
16. Goodacre, R., Vaidyanathan, S., Dunn, W. B., Harrigan, G. G., & Kell, D. B. (2004). Metabolomics by numbers: Acquiring and understanding global metabolite data. Trends in Biotechnology, 22, 245-252. doi: 10. 1016/j. tibtech. 2004. 03. 007.
17. Heinemann, M., & Zenobi, R. (2011). Single cell metabolomics. Current Opinion in Biotechnology, 22, 26-31. doi: 10. 1016/j. copbio. 2010. 09. 008.
18. Horai, H., et al. (2010). MassBank: A public repository for sharing mass spectral data for life sciences. Journal of Mass Spectrometry, 45, 703-714. doi: 10. 1002/jms. 1777.
19. Jones, E. A., Lockyer, N. P., & Vickerman, J. C. (2006). Suppression and enhancement of non-native molecules within biological systems. Applied Surface Science, 252, 6727-6730. doi: 10. 1016/j. apsusc. 2006. 02. 158.
20. Knochenmuss, R., & Zenobi, R. (2003). MALDI ionization: The role of in-plume processes. Chemical Reviews, 103, 441-452. doi: 10. 1021/cr0103773.
21. Kollmer, F. (2004). Cluster primary ion bombardment of organic materials. Applied Surface Science, 231, 153-158. doi: 10. 1016/j. apsusc. 2004. 03. 101.
22. Kopka, J., et al. (2005). GMD@CSB. DB: The Golm Metabolome Database. Bioinformatics, 21, 1635-1638. doi: 10. 1093/bioinformatics/bti236.
23. Kotze, H. L., et al. (2012). ToF-SIMS as a tool for metabolic profiling small biomolecules in cancer systems. Surface and Interface Analysis,. doi: 10. 1002/sia. 5055.
24. Leggett, G. J., & Vickerman, J. C. (1992). An empirical-model for ion formation from polymer surfaces during analysis by secondary ion mass-spectrometry. International Journal of Mass Spectrometry and Ion Processes, 122, 281-319. doi: 10. 1016/0168-1176(92)87021-6.
25. MacAleese, L., Stauber, J., & Heeren, R. M. A. (2009). Perspectives for imaging mass spectrometry in the proteomics landscape. Proteomics, 9, 819-834. doi: 10. 1002/pmic. 200800363.
26. McDonnell, L. A., Heeren, R. M. A., de Lange, R. P. J., & Fletcher, I. W. (2006). Higher sensitivity secondary ion mass spectrometry of biological molecules for high resolution, chemically specific imaging. Journal of the American Society for Mass Spectrometry, 17, 1195-1202. doi: 10. 1016/j. jasms. 2006. 05. 003.
27. Mouhib, T., Delcorte, A., Poleunis, C., & Bertrand, P. (2010). Organic secondary ion mass spectrometry: Signal enhancement by water vapor injection. Journal of the American Society for Mass Spectrometry, 21, 2005-2010. doi: 10. 1016/j. jasms. 2010. 08. 013.
28. Passarelli, M. K., & Winograd, N. (2011). Lipid imaging with time-of-flight secondary ion mass spectrometry (ToF-SIMS). Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids, 1811, 976-990.
29. Piwowar, A. M., Fletcher, J. S., Kordys, J., Lockyer, N. P., Winograd, N., & Vickerman, J. C. (2010). Effects of cryogenic sample analysis on molecular depth profiles with TOF-secondary ion mass spectrometry. Analytical Chemistry, 82, 8291-8299. doi: 10. 1021/ac101746h.
30. Rubakhin, S. S., Romanova, E. V., Nemes, P., & Sweedler, J. V. (2011). Profiling metabolites and peptides in single cells. Nature Methods, 8, S20-S29. doi: 10. 1038/nmeth. 1549.
31. Sabatine, M. S., et al. (2005). Metabolomic identification of novel biomarkers of myocardial ischemia. Circulation, 112, 3868-3875. doi: 10. 1161/circulationaha. 105. 569137.
32. Sjovall, P., Lausmaa, J., & Johansson, B. R. (2004). Mass spectrometric imaging of lipids in brain tissue. Analytical Chemistry, 76, 4271-4278. doi: 10. 1021/ac049389p.
33. Smith, D. F., Robinson, E. W., Tolmachev, A. V., Heeren, R. M. A., & Pasa-Tolic, L. (2011). C-60 secondary ion Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry, 83, 9552-9556. doi: 10. 1021/ac2023348.
34. Smith, C. A., et al. (2005). METLIN-A metabolite mass spectral database. Therapeutic Drug Monitoring, 27, 747-751. doi: 10. 1097/01. ftd. 0000179845. 53213. 39.
35. Sreekumar, A., et al. (2009). Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature, 457, 910-914. doi: 10. 1038/nature07762.
36. Takáts, Z., Wiseman, J. M., Gologan, B., & Cooks, R. G. (2004). Mass spectrometry sampling under ambient conditions with desorption electrospray ionization. Science, 306, 471-473. doi: 10. 1126/science. 1104404.
37. Vaidyanathan, S., Fletcher, J. S., Goodacre, R., Lockyer, N. P., Micklefield, J., & Vickerman, J. C. (2008). Subsurface biomolecular imaging of Streptomyces coelicolor using secondary ion mass spectrometry. Analytical Chemistry, 80, 1942-1951. doi: 10. 1021/ac701921e.
38. Vickerman, J. C. (2011). Molecular imaging and depth profiling by mass spectrometry-SIMS, MALDI or DESI? Analyst, 136, 2199-2217. doi: 10. 1039/C1AN00008J.
39. Vickerman, J. C., Briggs, D., & Henderson, A. (2006). The static SIMS library version 4. Manchester: Surfacespectra Ltd.
40. Weibel, D., Wong, S., Lockyer, N., Blenkinsopp, P., Hill, R., & Vickerman, J. C. (2003). A C60 primary ion beam system for time of flight secondary ion mass spectrometry: Its development and secondary ion yield characteristics. Analytical Chemistry, 75, 1754-1764. doi: 10. 1021/ac026338o.
41. Wishart, D. S., et al. (2007). HMDB: The human metabolome database. Nucleic Acids Research, 35, D521-D526. doi: 10. 1093/nar/gkl923.