Collema fasciculare belongs in Arctomiaceae

Lichenologist

Volumn 45, Issue 3, 2013, Pages 295-304

  Otálora, Mónica A G ^a   Wedin, Mats ^a  

^a SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

Arctomia; ascoma ontogeny; Collemataceae; cyanolichens; lichens; taxonomy

Indexed keywords

EID: 84877359955     PISSN: 00242829     EISSN: 10961135     Source Type: Journal    
DOI: 10.1017/S0024282912000849     Document Type: Article

References (46)

1. Degelius, G. (1954) The lichen genus Collema in Europe: morphology, taxonomy, ecology. Symbolae Botanicae Upsalienses 13: 1-499.
2. Degelius, G. (1974) The lichen genus Collema with special reference to the extra-European species. Symbolae Botanicae Upsalienses 20: 1-215.
3. Ekman, S., Andersen, H. L. & Wedin, M. (2008) The limitations of ancestral state reconstruction and the evolution of the ascus in the Lecanorales (lichenized Ascomycota). Systematic Biology 57: 141-156.
4. Filson, R. B. (1992) Collema. Flora of Australia 54: 161-173.
5. Fries, T. M. (1860) Lichenes Arctoi Europae Groenlandiaeque Hactenus Cogniti. Uppsala: Leffler.
6. Henssen, A. (1965) A review of the genera of the Collemataceae with simple spores (excluding Physma). Lichenologist 3: 29-41.
7. Henssen, A. (1969) Eine Studie uber die Gattung Arctomia. Svensk Botanisk Tidskrift 63: 126-138.
8. Henssen, A. & Jahns, H. M. (1973) ('1974') Lichenes. Eine Einführung in die Flechtenkunde. Stuttgart: Georg Thieme Verlag.
9. Henssen, A. & Kantvilas, G. (1985) Wawea fruticulosa, a new genus and species from the Southern Hemisphere. Lichenologist 17: 85-97.
10. Henssen, A., Keuck, G., Renner, B. & Vobis, G. (1981) The lecanoralean centrum. In Ascomycete Systematics. The Luttrellian Concept. (D. R. Reynolds, ed): 138-234. New York, Heidelberg, Berlin: Springer-Verlag.
11. Hibbett, D. S., Binder, M., Bischoff, J. F., Blackwell, M., Cannon, P. F., Eriksson, O. E., Huhndorf, S., James, T., Kirk, P. M., Lucking, R., et al. (2007) A higher level phylogenetic classification of the Fungi. Mycological Research 111: 509-547. (Pubitemid 46915419)
12. Hofstetter, V., Miadlikowska, J., Kauff, F. & Lutzoni, F. (2007) Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota). Molecular Phylogenetics and Evolution 44: 412-426. (Pubitemid 46829899)
13. Jgensen, P. M. (2003) A new species of Arctomia from Sichuan Province, China. Lichenologist 35: 287-289.
14. Jgensen, P. M. (2007) Collemataceae. Nordic Lichen Flora 3: 14-42.
15. Katoh, K. & Toh, H. (2008) Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
16. Kirk, P., Cannon, P. F., Minter, D. W. & Stalpers, J. A. (2008) Ainsworth & Bisby's Dictionary of the Fungi. 10th edn. Wallingford: CAB International.
17. Lumbsch, H. T. & Huhndorf, S. H. (2009) Myconet Volume 14. Fieldiana, Life and Earth Sciences 1: 1-64.
18. Lumbsch, H. T., Prado, R. & Kantvilas, G. (2005) Gregorella, a new genus to accommodate Moelleropsis humida and a molecular phylogeny of Arctomiaceae. Lichenologist 37: 291-302. (Pubitemid 41127689)
19. Lumbsch, H. T., Schmitt, I., Mangold, A. & Wedin, W. (2007) Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota).Mycological Research 111: 1133-1141. (Pubitemid 350101166)
20. Lutzoni, F., Kauff, F., Cox, J. C., McLaughlin, D., Celio, G., Dentinger, B., Padamsee, M., Hibbett, D., James, T. Y., Baloch, E., et al. (2004) Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480. (Pubitemid 43193713)
21. Maddison, W. & Maddison, D. (2001) MacClade: Analysis of Phylogeny and Character Evolution, Version 4.01. Sunderland, Massachusetts: Sinauer Associates.
22. Magain, N. & Seusiaux, E. (2012) A further new species in the lichen genus Arctomia: A. borbonica from Reunion (Mascarene archipelago). MycoKeys 4: 9-21.
23. Mason-Gamer, R. J. & Kellogg, E. A. (1996) Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
24. Miadlikowska, J., Kauff, F., Hofstetter, V., Fraker, E., Grube, M., Hafellner, J., Reeb, V., Hodkinson, B. P., Kukwa, M., Lucking, R., et al. (2006) New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA and two protein-coding genes. Mycologia 98: 1089-1102.
25. Miller, M. A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November, 2010, New Orleans, p. 1-8.
26. Muggia, L., Nelson, P., Wheeler, T., Yakovchenko, L. S., Tsberg, T. & Spribille, T. (2011) Convergent evolution of a symbiotic duet: the case of the lichen genus Polychidium (Peltigerales, Ascomycota). American Journal of Botany 98: 1647-1656.
27. Otaora, M. A. G., Martez, I., Molina, M. C., Arago, G. & Lutzoni, F. (2008) Phylogenetic relationships and taxonomy of the Leptogium lichenoides group (Collemataceae) in Europe. Taxon 57: 907-921.
28. Otaora,M. A. G.,Arago, G.,Molina,M. C.,Martez, I. & Lutzoni, F. (2010) Disentangling the Collema-Leptogium complex through amolecular phylogenetic study of the Collemataceae (Peltigerales, lichen-forming Ascomycota). Mycologia 102: 279-290.
29. Stedal, D. O. & Gremmen, N. J. M. (2001) The lichens of Marion and Prince Edward Islands. South African Journal of Botany 67: 552-572. (Pubitemid 34527167)
30. Stedal, D. O. & Gremmen, N. J. M. (2006) Lichens of sub-Antarctic Heard Island. South African Journal of Botany 72: 353-366. (Pubitemid 44208844)
31. Penn, O., Privman, E., Ashkenazy, H., Landan, G., Graur, D. & Pupko, T. (2010) GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Research 38: W23-W28.
32. Posada, D. (2008) JModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution 25: 1253-1256. (Pubitemid 351882013)
33. Rambaut, A. (2009) FigTree v1.3.1. Edinburgh: Institute of Evolutionary Biology, University of Edinburgh. Available at http://tree.bio.ed.ac.uk/ software/figtree/
34. Rambaut, A. & Drummond, A. J. (2007) Tracer version 1.5. Edinburgh: University of Edinburgh. Available at http://beast.bio.ed.ac.uk/Main
35. Reeb, V., Lutzoni, F. & Roux, C. (2004) Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Molecular Phylogenetics and Evolution 32: 1036-1060. (Pubitemid 39033555)
36. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D., Darling, A., Hona, S., Larget, B., Liu, L., Suchard, M. A. & Huelsenbeck, J. P. (2011) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542.
37. Schmitt, I., Crespo, A., Divakar, P. K., Frankhauser, J. D., Herman-Sackett, E., Kalb, K., Nelsen, M. P., Rivas-Plata, E., Shimp, A. D., Widhelm, T., et al. (2009) New primers for promising single-copy genes in fungal phylogenetics and systematics. Persoonia 23: 35-40.
38. Spribille, T. & Muggia, L. (2012) Expanded taxon sampling disentangles evolutionary relationships and reveals a new family in Peltigerales (Lecanoromycetidae, Ascomycota). Fungal diversity 59: 1-14.
39. Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. (Pubitemid 44642609)
40. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758-771.
41. Stiller, J. W. & Hall, B. D. (1997) The origin of red algae: implications for plastid evolution. Proceedings of the National Academy of Sciences 94: 4520-4525. (Pubitemid 27194274)
42. Wedin, M., Wiklund, E., Crewe, A., Doring, H., Ekman, S., Nyberg, A ., Schmitt, I. & Lumbsch, H. T. (2005) Phylogenetic relationships of Lecanoromycetes (Ascomycota) as revealed by analyses of mtSSU and nLSU rDNA sequence data. Mycological Research 109: 159-172. (Pubitemid 40428304)
43. Wedin, M., Wiklund, E., Jgensen, P. M. & Ekman, S. (2009) Slippery when wet: phylogeny and character evolution in the gelatinous cyanobacterial lichens (Peltigerales, Ascomycetes). Molecular Phylogenetics and Evolution 53: 862-871.
44. Wiens, J. J. (1998) Combining data sets with different phylogenetic histories. Systematic Biology 47: 568-581. (Pubitemid 128370897)
45. Zahlbruckner, A. (1925) Catalogus Lichenum Universalis Vol. 3. Leipzig: Borntraeger.
46. Zoller, S., Scheidegger, C. & Sperisen, C. (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31: 511-516. (Pubitemid 29532221)