-
2
-
-
84861482812
-
Family Geminiviridae
-
King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus Taxonomy. 9th Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, London, United Kingdom.
-
Brown JK, Fauquet CM, Briddon RW, Zerbini FM, Moriones E, Navas- Castillo J. 2012. Family Geminiviridae, p 351-373. In King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus Taxonomy. 9th Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, London, United Kingdom.
-
(2012)
, pp. 351-373
-
-
Brown, J.K.1
Fauquet, C.M.2
Briddon, R.W.3
Zerbini, F.M.4
Moriones, E.5
Navas-Castillo, J.6
-
3
-
-
68449101823
-
Cassava mosaic geminiviruses actual knowledge and perspectives
-
Patil BL, Fauquet CM. 2009. Cassava mosaic geminiviruses: actual knowledge and perspectives. Mol. Plant Pathol. 10:685-701.
-
(2009)
Mol. Plant Pathol.
, vol.10
, pp. 685-701
-
-
Patil, B.L.1
Fauquet, C.M.2
-
4
-
-
30344462984
-
Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control
-
Seal SE, Van den Bosch F, Jeger MJ. 2006. Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Crit. Rev. Plant Sci. 25:23- 46.
-
(2006)
Crit. Rev. Plant Sci.
, vol.25
, pp. 23-46
-
-
Seal, S.E.1
Van den Bosch, F.2
Jeger, M.J.3
-
6
-
-
78449252566
-
The spread of tomato yellow leaf curl virus from the Middle East to the world
-
e1001164 doi:10.1371/journal.ppat.1001164.
-
Lefeuvre P, Martin DP, Harkins G, Lemey P, Gray AJ, Meredith S, Lakay F, Monjane A, Lett JM, Varsani A, Heydarnejad J. 2010. The spread of tomato yellow leaf curl virus from the Middle East to the world. PLoS Pathog. 6:e1001164. doi:10.1371/journal.ppat.1001164.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Lefeuvre, P.1
Martin, D.P.2
Harkins, G.3
Lemey, P.4
Gray, A.J.5
Meredith, S.6
Lakay, F.7
Monjane, A.8
Lett, J.M.9
Varsani, A.10
Heydarnejad, J.11
-
7
-
-
17644370697
-
Diversity and distribution of begomoviruses infecting tomato in India
-
Reddy RVC, Colvin J, Muniyappa V, Seal S. 2005. Diversity and distribution of begomoviruses infecting tomato in India. Arch. Virol. 150:845- 867.
-
(2005)
Arch. Virol.
, vol.150
, pp. 845-867
-
-
Reddy, R.V.C.1
Colvin, J.2
Muniyappa, V.3
Seal, S.4
-
8
-
-
1242292369
-
The ecology and epidemiology of whiteflytransmitted viruses in Latin America
-
Morales FJ, Jones PG. 2004. The ecology and epidemiology of whiteflytransmitted viruses in Latin America. Virus Res. 100:57- 65.
-
(2004)
Virus Res.
, vol.100
, pp. 57-65
-
-
Morales, F.J.1
Jones, P.G.2
-
9
-
-
0030700760
-
The emergence of whitefly-transmitted geminiviruses in tomato in the western hemisphere
-
Polston JE, Anderson PK. 1997. The emergence of whitefly-transmitted geminiviruses in tomato in the western hemisphere. Plant Dis. 81:1358- 1369.
-
(1997)
Plant Dis.
, vol.81
, pp. 1358-1369
-
-
Polston, J.E.1
Anderson, P.K.2
-
10
-
-
0037326920
-
Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil
-
Ribeiro SG, Ambrozevícius LP, Avila AC, Bezerra IC, Calegario RF, Fernandes JJ, Lima MF, de Mello RN, Rocha H, Zerbini FM. 2003. Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil. Arch. Virol. 148:281-295.
-
(2003)
Arch. Virol.
, vol.148
, pp. 281-295
-
-
Ribeiro, S.G.1
Ambrozevícius, L.P.2
Avila, A.C.3
Bezerra, I.C.4
Calegario, R.F.5
Fernandes, J.J.6
Lima, M.F.7
de Mello, R.N.8
Rocha, H.9
Zerbini, F.M.10
-
11
-
-
0001555696
-
Widespread occurrence of eastern Mediterranean "strain" of tomato yellow leaf curl geminivirus in tomatoes in the Dominican Republic
-
Nakhla MK, Maxwell DP, Martinez RT, Carvalho MG, Gilbertson RL. 1994. Widespread occurrence of eastern Mediterranean "strain" of tomato yellow leaf curl geminivirus in tomatoes in the Dominican Republic. Plant Dis. 78:926.
-
(1994)
Plant Dis.
, vol.78
, pp. 926
-
-
Nakhla, M.K.1
Maxwell, D.P.2
Martinez, R.T.3
Carvalho, M.G.4
Gilbertson, R.L.5
-
12
-
-
35948966802
-
Multiple introductions of the Old World Begomovirus Tomato yellow leaf curl virus into the New World
-
Duffy S, Holmes EC. 2007. Multiple introductions of the Old World Begomovirus Tomato yellow leaf curl virus into the New World. Appl. Environ. Microbiol. 73:7114 -7117.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 7114-7117
-
-
Duffy, S.1
Holmes, E.C.2
-
14
-
-
67651230447
-
Tomato yellow leaf distortion virus, a new bipartite begomovirus infecting tomato in Cuba
-
Fiallo-Olivé E, Martinez-Zubiaur Y, Rivera-Bustamante RF. 2009. Tomato yellow leaf distortion virus, a new bipartite begomovirus infecting tomato in Cuba. Plant Pathol. 58:785.
-
(2009)
Plant Pathol.
, vol.58
, pp. 785
-
-
Fiallo-Olivé, E.1
Martinez-Zubiaur, Y.2
Rivera-Bustamante, R.F.3
-
15
-
-
53849115345
-
Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil
-
Castillo-Urquiza GP, Beserra JE, Jr, Bruckner FP, Lima AT, Varsani A, Alfenas-Zerbini P, Murilo Zerbini F. 2008. Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil. Arch. Virol. 153:1985-1989.
-
(2008)
Arch. Virol.
, vol.153
, pp. 1985-1989
-
-
Castillo-Urquiza, G.P.1
Beserra, J.E.2
Bruckner, F.P.J.3
Lima, A.T.4
Varsani, A.5
Alfenas-Zerbini, P.6
Murilo Zerbini, F.7
-
16
-
-
67349093522
-
Evolution of geminiviruses and their satellites
-
Nawaz-ul-Rehman MS, Fauquet CM. 2009. Evolution of geminiviruses and their satellites. FEBS Lett. 583:1825-1832.
-
(2009)
FEBS Lett.
, vol.583
, pp. 1825-1832
-
-
Nawaz-ul-Rehman, M.S.1
Fauquet, C.M.2
-
18
-
-
33746266239
-
Biological and molecular properties of Tomato rugose mosaic virus (ToRMV), a new tomato-infecting begomovirus from Brazil
-
Fernandes JJ, Carvalho MG, Andrade EC, Brommonschenkel SH, Fontes EPB, Zerbini FM. 2006. Biological and molecular properties of Tomato rugose mosaic virus (ToRMV), a new tomato-infecting begomovirus from Brazil. Plant Pathol. 55:513-522.
-
(2006)
Plant Pathol.
, vol.55
, pp. 513-522
-
-
Fernandes, J.J.1
Carvalho, M.G.2
Andrade, E.C.3
Brommonschenkel, S.H.4
Fontes, E.P.B.5
Zerbini, F.M.6
-
19
-
-
34249803834
-
Molecular and biological characterization of Tomato chlorotic mottle virus suggests that recombination underlies the evolution and diversity of Brazilian tomato begomoviruses
-
Ribeiro SG, Martin DP, Lacorte C, Simões IC, Orlandini DRS, Inoue- Nagata AK. 2007. Molecular and biological characterization of Tomato chlorotic mottle virus suggests that recombination underlies the evolution and diversity of Brazilian tomato begomoviruses. Phytopathology 97:702- 711.
-
(2007)
Phytopathology
, vol.97
, pp. 702-711
-
-
Ribeiro, S.G.1
Martin, D.P.2
Lacorte, C.3
Simões, I.C.4
Orlandini, D.R.S.5
Inoue-Nagata, A.K.6
-
20
-
-
35348996578
-
Characterization of Tomato yellow spot virus, (ToYSV), a novel tomato-infecting begomovirus from Brazil
-
Calegario RF, Ferreira SS, Andrade EC, Zerbini FM. 2007. Characterization of Tomato yellow spot virus, (ToYSV), a novel tomato-infecting begomovirus from Brazil. Braz. J. Agric. Res. 42:1335-1343.
-
(2007)
Braz. J. Agric. Res.
, vol.42
, pp. 1335-1343
-
-
Calegario, R.F.1
Ferreira, S.S.2
Andrade, E.C.3
Zerbini, F.M.4
-
21
-
-
39049105458
-
Diversity and prevalence of Brazilian bipartite begomovirus species associated to tomatoes
-
Fernandes FR, de Albuquerque LC, de Britto Giordano L, Boiteux LS, de Avila AC, Inoue-Nagata AK. 2008. Diversity and prevalence of Brazilian bipartite begomovirus species associated to tomatoes. Virus Genes 36:251-258.
-
(2008)
Virus Genes
, vol.36
, pp. 251-258
-
-
Fernandes, F.R.1
De Albuquerque, L.C.2
De Britto Giordano, L.3
Boiteux, L.S.4
De Avila, A.C.5
Inoue-Nagata, A.K.6
-
22
-
-
77149133408
-
Characterization of tomato yellow vein streak virus, a begomovirus from Brazil
-
Albuquerque LC, Martin DP, Avila AC, Inoue-Nagata AK. 2010. Characterization of tomato yellow vein streak virus, a begomovirus from Brazil. Virus Genes 40:140 -147.
-
(2010)
Virus Genes
, vol.40
, pp. 140-147
-
-
Albuquerque, L.C.1
Martin, D.P.2
Avila, A.C.3
Inoue-Nagata, A.K.4
-
23
-
-
84859111231
-
Further characterization of tomato-infecting begomoviruses in Brazil
-
Albuquerque LC, Varsani A, Fernandes FR, Pinheiro B, Martin DP, de Tarso Oliveira Ferreira P, Lemos TO, Inoue-Nagata AK. 2012. Further characterization of tomato-infecting begomoviruses in Brazil. Arch. Virol. 157:747-752.
-
(2012)
Arch. Virol.
, vol.157
, pp. 747-752
-
-
Albuquerque, L.C.1
Varsani, A.2
Fernandes, F.R.3
Pinheiro, B.4
Martin, D.P.5
De Tarso Oliveira Ferreira, P.6
Lemos, T.O.7
Inoue-Nagata, A.K.8
-
24
-
-
0013460825
-
Genetic diversity of begomoviruses infecting tomato and associated weeds in Southeastern Brazil
-
Ambrozevicius LP, Calegario RF, Fontes EPB, Carvalho MG, Zerbini FM. 2002. Genetic diversity of begomoviruses infecting tomato and associated weeds in Southeastern Brazil. Fitopatol. Bras. 27:372-377.
-
(2002)
Fitopatol. Bras.
, vol.27
, pp. 372-377
-
-
Ambrozevicius, L.P.1
Calegario, R.F.2
Fontes, E.P.B.3
Carvalho, M.G.4
Zerbini, F.M.5
-
25
-
-
33750295409
-
New species emergence via recombination among isolates of the Brazilian tomato-infecting begomovirus complex
-
Inoue-Nagata AK, Martin DP, Boiteux LS, Giordano LD, Bezerra IC, de Avila AC. 2006. New species emergence via recombination among isolates of the Brazilian tomato-infecting begomovirus complex. Braz. J. Agric. Res. 41:1329 -1332.
-
(2006)
Braz. J. Agric. Res.
, vol.41
, pp. 1329-1332
-
-
Inoue-Nagata, A.K.1
Martin, D.P.2
Boiteux, L.S.3
Giordano, L.D.4
Bezerra, I.C.5
De Avila, A.C.6
-
26
-
-
0028186290
-
Geminivirus transmission and biological characterization of Bemisia tabaci (Gennadius) biotypes from different geographical regions
-
Bedford ID, Briddon RW, Brown JK, Rosell RC, Markham PG. 1994. Geminivirus transmission and biological characterization of Bemisia tabaci (Gennadius) biotypes from different geographical regions. Ann. Appl. Biol. 125:311-325.
-
(1994)
Ann. Appl. Biol.
, vol.125
, pp. 311-325
-
-
Bedford, I.D.1
Briddon, R.W.2
Brown, J.K.3
Rosell, R.C.4
Markham, P.G.5
-
27
-
-
84860713715
-
Genetic diversity of begomoviruses infecting tomato in Paty do Alferes, Rio de Janeiro state, Brazil
-
Castillo-Urquiza GP, Beserra Junior JEA, Alfenas-Zerbini P, Varsani A, Lima ATM, Barros DR, Zerbini FM. 2007. Genetic diversity of begomoviruses infecting tomato in Paty do Alferes, Rio de Janeiro state, Brazil. Virus Rev. Res. 12:233.
-
(2007)
Virus Rev. Res.
, vol.12
, pp. 233
-
-
Castillo-Urquiza, G.P.1
Beserra Junior, J.E.A.2
Alfenas-Zerbini, P.3
Varsani, A.4
Lima, A.T.M.5
Barros, D.R.6
Zerbini, F.M.7
-
28
-
-
85112361894
-
Genetic diversity of begomoviruses in tomatoes in midwestern São Paulo state
-
In Portuguese.
-
Cotrim MA, Krause-Sakate R, Narita N, Zerbini FM, Pavan MA. 2007. Genetic diversity of begomoviruses in tomatoes in midwestern São Paulo state. Summa Phytopathol. 33:300 -303. (In Portuguese.)
-
(2007)
Summa Phytopathol.
, vol.33
, pp. 300-303
-
-
Cotrim, M.A.1
Krause-Sakate, R.2
Narita, N.3
Zerbini, F.M.4
Pavan, M.A.5
-
29
-
-
52649089553
-
Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen
-
Varsani A, Shepherd DN, Monjane AL, Owor BE, Erdmann JB, Rybicki EP, Peterschmitt M, Briddon RW, Markham PG, Oluwafemi S, Windram OP, Lefeuvre P, Lett JM, Martin DP. 2008. Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. J. Gen. Virol. 89:2063-2074.
-
(2008)
J. Gen. Virol.
, vol.89
, pp. 2063-2074
-
-
Varsani, A.1
Shepherd, D.N.2
Monjane, A.L.3
Owor, B.E.4
Erdmann, J.B.5
Rybicki, E.P.6
Peterschmitt, M.7
Briddon, R.W.8
Markham, P.G.9
Oluwafemi, S.10
Windram, O.P.11
Lefeuvre, P.12
Lett, J.M.13
Martin, D.P.14
-
30
-
-
37849014296
-
Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus
-
Duffy S, Holmes EC. 2008. Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. J. Virol. 82:957-965.
-
(2008)
J. Virol.
, vol.82
, pp. 957-965
-
-
Duffy, S.1
Holmes, E.C.2
-
31
-
-
67649224497
-
Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses
-
Duffy S, Holmes EC. 2009. Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses. J. Gen. Virol. 90:1539 -1547.
-
(2009)
J. Gen. Virol.
, vol.90
, pp. 1539-1547
-
-
Duffy, S.1
Holmes, E.C.2
-
32
-
-
34249787638
-
Genetic structure and population variability of tomato yellow leaf curl China virus
-
Ge LM, Zhang JT, Zhou XP, Li HY. 2007. Genetic structure and population variability of tomato yellow leaf curl China virus. J. Virol. 81:5902- 5907.
-
(2007)
J. Virol.
, vol.81
, pp. 5902-5907
-
-
Ge, L.M.1
Zhang, J.T.2
Zhou, X.P.3
Li, H.Y.4
-
33
-
-
0032434595
-
Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars
-
Isnard M, Granier M, Frutos R, Reynaud B, Peterschmitt M. 1998. Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars. J. Gen. Virol. 79:3091-3099.
-
(1998)
J. Gen. Virol.
, vol.79
, pp. 3091-3099
-
-
Isnard, M.1
Granier, M.2
Frutos, R.3
Reynaud, B.4
Peterschmitt, M.5
-
34
-
-
0034785671
-
Structure and temporal dynamics of populations within wheat streak mosaic virus isolates
-
Hall JS, French R, Morris TJ, Stenger DC. 2001. Structure and temporal dynamics of populations within wheat streak mosaic virus isolates. J. Virol. 75:10231-10243.
-
(2001)
J. Virol.
, vol.75
, pp. 10231-10243
-
-
Hall, J.S.1
French, R.2
Morris, T.J.3
Stenger, D.C.4
-
35
-
-
67349096322
-
Two new natural begomovirus recombinants associated with the tomato yellow leaf curl disease co-exist with parental viruses in tomato epidemics in Italy
-
Davino S, Napoli C, Dellacroce C, Miozzi L, Noris E, Davino M, Accotto GP. 2009. Two new natural begomovirus recombinants associated with the tomato yellow leaf curl disease co-exist with parental viruses in tomato epidemics in Italy. Virus Res. 143:15-23.
-
(2009)
Virus Res.
, vol.143
, pp. 15-23
-
-
Davino, S.1
Napoli, C.2
Dellacroce, C.3
Miozzi, L.4
Noris, E.5
Davino, M.6
Accotto, G.P.7
-
36
-
-
43349101663
-
Evidence of local evolution of tomatoinfecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali
-
Zhou YC, Noussourou M, Kon T, Rojas MR, Jiang H, Chen LF, Gamby K, Foster R, Gilbertson RL. 2008. Evidence of local evolution of tomatoinfecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali. Arch. Virol. 153:693-706.
-
(2008)
Arch. Virol.
, vol.153
, pp. 693-706
-
-
Zhou, Y.C.1
Noussourou, M.2
Kon, T.3
Rojas, M.R.4
Jiang, H.5
Chen, L.F.6
Gamby, K.7
Foster, R.8
Gilbertson, R.L.9
-
37
-
-
34250175133
-
Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses
-
García-Andrés S, Tomas DM, Sanchez-Campos S, Navas-Castillo J, Moriones E. 2007. Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses. Virology 365:210 -219.
-
(2007)
Virology
, vol.365
-
-
García-Andrés, S.1
Tomas, D.M.2
Sanchez-Campos, S.3
Navas-Castillo, J.4
Moriones, E.5
-
38
-
-
0036938933
-
A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations
-
Monci F, Sanchez-Campos S, Navas-Castillo J, Moriones E. 2002. A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology 303:317-326.
-
(2002)
Virology
, vol.303
, pp. 317-326
-
-
Monci, F.1
Sanchez-Campos, S.2
Navas-Castillo, J.3
Moriones, E.4
-
39
-
-
33751415086
-
Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp forms pseudorecombinants with begomoviruses from tomato but not from Sida.
-
Andrade EC, Manhani GG, Alfenas PF, Calegario RF, Fontes EPB, Zerbini FM. 2006. Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp., forms pseudorecombinants with begomoviruses from tomato but not from Sida. J. Gen. Virol. 87:3687-3696.
-
(2006)
J. Gen. Virol.
, vol.87
, pp. 3687-3696
-
-
Andrade, E.C.1
Manhani, G.G.2
Alfenas, P.F.3
Calegario, R.F.4
Fontes, E.P.B.5
Zerbini, F.M.6
-
40
-
-
63949084990
-
Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control
-
Jones RAC. 2009. Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Res. 141:113-130.
-
(2009)
Virus Res.
, vol.141
, pp. 113-130
-
-
Jones, R.A.C.1
-
41
-
-
0002594984
-
A rapid DNA isolation procedure for small amounts of fresh leaf tissue
-
Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem. Bull. 19:11-15.
-
(1987)
Phytochem. Bull.
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
42
-
-
1642523843
-
A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase
-
Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T. 2004. A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase. J. Virol. Methods 116:209 -211.
-
(2004)
J. Virol. Methods
, vol.116
, pp. 209-211
-
-
Inoue-Nagata, A.K.1
Albuquerque, L.C.2
Rocha, W.B.3
Nagata, T.4
-
43
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403- 410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
44
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
doi:10.1186/1471-2105-5-113
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. doi:10 .1186/1471-2105-5-113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
45
-
-
43349089243
-
Inferring evolutionary trees with PAUP
-
doi:10.1002/0471250953.bi0604s00
-
Wilgenbusch JC, Swofford D. 2003. Inferring evolutionary trees with PAUP. Curr. Protoc. Bioinformatics 6:6.4.21- 6.4.28. doi:10.1002 /0471250953.bi0604s00.
-
(2003)
Curr. Protoc. Bioinformatics
, vol.6
, pp. 6421-6428
-
-
Wilgenbusch, J.C.1
Swofford, D.2
-
46
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817- 818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
48
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
49
-
-
33846462244
-
MrModeltest v2, program distributed by the author
-
Uppsala University, Uppsala, Sweden.
-
Nylander JAA. 2004. MrModeltest v2, program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
-
(2004)
Evolutionary Biology Centre
-
-
Nylander, J.A.A.1
-
51
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
52
-
-
1542347067
-
Neighbor-Net: an agglomerative method for the construction of phylogenetic networks
-
Bryant D, Moulton V. 2004. Neighbor-Net: an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 21:255-265.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 255-265
-
-
Bryant, D.1
Moulton, V.2
-
53
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254 -267.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
54
-
-
77957243284
-
RDP3: a flexible and fast computer program for analyzing recombination
-
Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P. 2010. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462-2463.
-
(2010)
Bioinformatics
, vol.26
, pp. 2462-2463
-
-
Martin, D.P.1
Lemey, P.2
Lott, M.3
Moulton, V.4
Posada, D.5
Lefeuvre, P.6
-
55
-
-
72949094542
-
Genetic data analysis II: methods for discrete population genetic data
-
Sunderland, MA.
-
Weir BS. 1996. Genetic data analysis II: methods for discrete population genetic data. Sinauer Associated Inc., Sunderland, MA.
-
(1996)
Sinauer Associated Inc.
-
-
Weir, B.S.1
-
56
-
-
32044468310
-
an integrated software package for population genetics data analysis Evol
-
Arlequin,version 3.0
-
Excoffier L, Laval G, Schneider S. 2007. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinformatics Online 1:47-50.
-
(2007)
Bioinformatics Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
58
-
-
17744396121
-
Not so different after all: a comparison of methods for detecting amino acid sites under selection
-
Kosakovsky Pond SL, Frost SDW. 2005. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22:1208 -1222.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.W.2
-
59
-
-
72049117587
-
Spatio-temporal pattern of a begomovirus disease caused by Tomato yellow vein streak virus in tomato in Campinas region, São Paulo
-
In Portuguese.
-
Della Vecchia MGS, Rosa DD, Bergamin Filho A, Amorim L, Rezende JAM, Ribeiro A. 2007. Spatio-temporal pattern of a begomovirus disease caused by Tomato yellow vein streak virus in tomato in Campinas region, São Paulo. Summa Phytopathol. 33:387-395. (In Portuguese.)
-
(2007)
Summa Phytopathol.
, vol.33
, pp. 387-395
-
-
Della Vecchia, M.G.S.1
Rosa, D.D.2
Bergamin Filho, A.3
Amorim, L.4
Rezende, J.A.M.5
Ribeiro, A.6
-
60
-
-
78650199341
-
Molecular characterisation and relative incidence of bean- and soybean-infecting begomoviruses in northwestern Argentina
-
Rodríguez-Pardina PE, Hanada K, Laguna IG, Zerbini FM, Ducasse DA. 2010. Molecular characterisation and relative incidence of bean- and soybean-infecting begomoviruses in northwestern Argentina. Ann. Appl. Biol. 158:69 -78.
-
(2010)
Ann. Appl. Biol.
, vol.158
-
-
Rodríguez-Pardina, P.E.1
Hanada, K.2
Laguna, I.G.3
Zerbini, F.M.4
Ducasse, D.A.5
-
61
-
-
84877342690
-
Bean golden mosaic in Brazil
-
(In Portuguese.)
-
De Fazio G. 1985. Bean golden mosaic in Brazil. Fitopatol. Bras. 10:41- 48. (In Portuguese.)
-
(1985)
Fitopatol. Bras.
, vol.10
, pp. 41-48
-
-
De Fazio, G.1
-
62
-
-
0028894260
-
Analysis of African cassava mosaic virus recombinants suggest strand nicking occurs within the conserved nonanucleotide motif during the initiation of rolling circle DNA replication
-
Stanley J. 1995. Analysis of African cassava mosaic virus recombinants suggest strand nicking occurs within the conserved nonanucleotide motif during the initiation of rolling circle DNA replication. Virology 206:707- 712.
-
(1995)
Virology
, vol.206
, pp. 707-712
-
-
Stanley, J.1
-
63
-
-
0033590220
-
Possible emergence of new geminiviruses by frequent recombination
-
Padidam M, Sawyer S, Fauquet CM. 1999. Possible emergence of new geminiviruses by frequent recombination. Virology 265:218 -224.
-
(1999)
Virology
, vol.265
, pp. 218-224
-
-
Padidam, M.1
Sawyer, S.2
Fauquet, C.M.3
-
64
-
-
0033278884
-
Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus
-
Sanz AI, Fraile A, Gallego JM, Malpica JM, García-Arenal F. 1999. Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus. J. Mol. Evol. 49:672- 681.
-
(1999)
J. Mol. Evol.
, vol.49
-
-
Sanz, A.I.1
Fraile, A.2
Gallego, J.M.3
Malpica, J.M.4
García-Arenal, F.5
-
65
-
-
37349086780
-
Avoidance of protein fold disruption in natural virus recombinants
-
doi: 10.1371/journal.ppat.0030181
-
Lefeuvre P, Lett JM, Reynaud B, Martin DP. 2007. Avoidance of protein fold disruption in natural virus recombinants. PLoS Pathog. 3:e181. doi: 10.1371/journal.ppat.0030181.
-
(2007)
PLoS Pathog.
, vol.3
-
-
Lefeuvre, P.1
Lett, J.M.2
Reynaud, B.3
Martin, D.P.4
-
66
-
-
36749074393
-
Begomovirus 'melting pot' in the south-west Indian Ocean islands: molecular diversity and evolution through recombination
-
Lefeuvre P, Martin DP, Hoareau M, Naze F, Delatte H, Thierry M, Varsani A, Becker N, Reynaud B, Lett JM. 2007. Begomovirus 'melting pot' in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. J. Gen. Virol. 88:3458 -3468.
-
(2007)
J. Gen. Virol.
, vol.88
, pp. 3458-3468
-
-
Lefeuvre, P.1
Martin, D.P.2
Hoareau, M.3
Naze, F.4
Delatte, H.5
Thierry, M.6
Varsani, A.7
Becker, N.8
Reynaud, B.9
Lett, J.M.10
-
67
-
-
0029946794
-
Increased pathogenicity in a pseudorecombinant bipartite geminivirus correlates with intermolecular recombination
-
Hou YM, Gilbertson RL. 1996. Increased pathogenicity in a pseudorecombinant bipartite geminivirus correlates with intermolecular recombination. J. Virol. 70:5430 -5436.
-
(1996)
J. Virol.
, vol.70
, pp. 5430-5436
-
-
Hou, Y.M.1
Gilbertson, R.L.2
-
68
-
-
77950645032
-
Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses
-
Briddon RW, Patil BL, Bagewadi B, Nawaz-ul-Rehman MS, Fauquet CM. 2010. Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC Evol. Biol. 10:97.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 97
-
-
Briddon, R.W.1
Patil, B.L.2
Bagewadi, B.3
Nawaz-ul-Rehman, M.S.4
Fauquet, C.M.5
-
69
-
-
82455188006
-
High genetic variability and recombination in a begomovirus population infecting the ubiquitous weed Cleome affinis in northeastern Brazil
-
da Silva SJC, Castillo-Urquiza GP, Hora Júnior BT, Assunção IP, Lima GSA, Pio-Ribeiro G, Mizubuti ESG, Zerbini FM. 2011. High genetic variability and recombination in a begomovirus population infecting the ubiquitous weed Cleome affinis in northeastern Brazil. Arch. Virol. 156: 2205-2213.
-
(2011)
Arch. Virol.
, vol.156
, pp. 2205-2213
-
-
Da Silva, S.J.C.1
Castillo-Urquiza, G.P.2
Hora Júnior, B.T.3
Assunção, I.P.4
Lima, G.S.A.5
Pio-Ribeiro, G.6
Mizubuti, E.S.G.7
Zerbini, F.M.8
-
70
-
-
84858754268
-
Circular DNA genomics (circomics) exemplified for geminiviruses in bean crops and weeds of northeastern Brazil
-
Wyant PS, Strohmeier S, Schafer B, Krenz B, Assuncao IP, Lima GSD, Jeske H. 2012. Circular DNA genomics (circomics) exemplified for geminiviruses in bean crops and weeds of northeastern Brazil. Virology 427: 151-157.
-
(2012)
Virology
, vol.427
, pp. 151-157
-
-
Wyant, P.S.1
Strohmeier, S.2
Schafer, B.3
Krenz, B.4
Assuncao, I.P.5
Lima, G.S.D.6
Jeske, H.7
-
71
-
-
77954535850
-
The first DNA 1-like alpha satellites in association with New World begomoviruses in natural infections
-
Paprotka T, Metzler V, Jeske H. 2010. The first DNA 1-like alpha satellites in association with New World begomoviruses in natural infections. Virology 404:148 -157.
-
(2010)
Virology
, vol.404
-
-
Paprotka, T.1
Metzler, V.2
Jeske, H.3
-
72
-
-
63449133264
-
Rapid host adaptation by extensive recombination
-
van der Walt E, Rybicki EP, Varsani A, Polston JE, Billharz R, Donaldson L, Monjane AL, Martin DP. 2009. Rapid host adaptation by extensive recombination. J. Gen. Virol. 90:734 -746.
-
(2009)
J. Gen. Virol.
, vol.90
, pp. 734-746
-
-
Van der Walt, E.1
Rybicki, E.P.2
Varsani, A.3
Polston, J.E.4
Billharz, R.5
Donaldson, L.6
Monjane, A.L.7
Martin, D.P.8
-
73
-
-
40849097775
-
Rates of evolutionary change in viruses: patterns and determinants
-
Duffy S, Shackelton LA, Holmes EC. 2008. Rates of evolutionary change in viruses: patterns and determinants. Nat. Rev. Genet. 9:267-276.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 267-276
-
-
Duffy, S.1
Shackelton, L.A.2
Holmes, E.C.3
-
74
-
-
72049103426
-
Tomato yellow vein streak virus: relationship with Bemisia tabaci biotype B and host range
-
Firmino AC, Yuki VA, Moreira AG, Rezende JAM. 2009. Tomato yellow vein streak virus: relationship with Bemisia tabaci biotype B and host range. Sci. Agric. 66:793-799.
-
(2009)
Sci. Agric.
, vol.66
, pp. 793-799
-
-
Firmino, A.C.1
Yuki, V.A.2
Moreira, A.G.3
Rezende, J.A.M.4
-
75
-
-
62749122244
-
Widely conserved recombination patterns among single-stranded DNA viruses
-
Lefeuvre P, Lett JM, Varsani A, Martin DP. 2009. Widely conserved recombination patterns among single-stranded DNA viruses. J. Virol. 83: 2697-2707.
-
(2009)
J. Virol.
, vol.83
, pp. 2697-2707
-
-
Lefeuvre, P.1
Lett, J.M.2
Varsani, A.3
Martin, D.P.4
-
76
-
-
0033934013
-
Multiple infection, recombination and genome relationships among begomovirus isolates found in cotton and other plants in Pakistan
-
Sanz AI, Fraile A, García-Arenal F, Zhou X, Robinson DJ, Khalid S, Butt T, Harrison BD. 2000. Multiple infection, recombination and genome relationships among begomovirus isolates found in cotton and other plants in Pakistan. J. Gen. Virol. 81:1839 -1849.
-
(2000)
J. Gen. Virol.
, vol.81
, pp. 1839-1849
-
-
Sanz, A.I.1
Fraile, A.2
García-Arenal, F.3
Zhou, X.4
Robinson, D.J.5
Khalid, S.6
Butt, T.7
Harrison, B.D.8
-
77
-
-
0035170568
-
Complete nucleotide sequence and host range of South African cassava mosaic virus: further evidence for recombination amongst begomoviruses
-
Berrie LC, Rybicki EP, Rey MEC. 2001. Complete nucleotide sequence and host range of South African cassava mosaic virus: further evidence for recombination amongst begomoviruses. J. Gen. Virol. 82:53-58.
-
(2001)
J. Gen. Virol.
, vol.82
, pp. 53-58
-
-
Berrie, L.C.1
Rybicki, E.P.2
Rey, M.E.C.3
-
78
-
-
54849442462
-
Experimental observations of rapid Maize streak virus evolution reveal a strand-specific nucleotide substitution bias
-
van der Walt E, Martin DP, Varsani A, Polston JE, Rybicki EP. 2008. Experimental observations of rapid Maize streak virus evolution reveal a strand-specific nucleotide substitution bias. Virol. J. 5:104.
-
(2008)
Virol. J.
, vol.5
, pp. 104
-
-
Van der Walt, E.1
Martin, D.P.2
Varsani, A.3
Polston, J.E.4
Rybicki, E.P.5
-
79
-
-
84860765229
-
Species diversity, phylogeny and genetic variability of begomovirus populations infecting leguminous weeds in northeastern Brazil
-
Silva SJC, Castillo-Urquiza GP, Hora-Junior BT, Assunção IP, Lima GSA, Pio-Ribeiro G, Mizubuti ESG, Zerbini FM. 2012. Species diversity, phylogeny and genetic variability of begomovirus populations infecting leguminous weeds in northeastern Brazil. Plant Pathol. 61:457- 467.
-
(2012)
Plant Pathol.
, vol.61
, pp. 457-467
-
-
Silva, S.J.C.1
Castillo-Urquiza, G.P.2
Hora-Junior, B.T.3
Assunção, I.P.4
Lima, G.S.A.5
Pio-Ribeiro, G.6
Mizubuti, E.S.G.7
Zerbini, F.M.8
-
81
-
-
17744403618
-
Bean dwarf mosaic geminivirus movement proteins recognize DNA in a form- and size-specific manner
-
Rojas MR, Noueiry AO, Lucas WJ, Gilbertson RL. 1998. Bean dwarf mosaic geminivirus movement proteins recognize DNA in a form- and size-specific manner. Cell 95:105-113.
-
(1998)
Cell
, vol.95
, pp. 105-113
-
-
Rojas, M.R.1
Noueiry, A.O.2
Lucas, W.J.3
Gilbertson, R.L.4
-
82
-
-
0031914861
-
Host adaptation and replication properties of two bipartite geminiviruses and their pseudorecombinants
-
Hou YM, Paplomatas EJ, Gilbertson RL. 1998. Host adaptation and replication properties of two bipartite geminiviruses and their pseudorecombinants. Mol. Plant Microbe Interact. 11:208 -217.
-
(1998)
Mol. Plant Microbe Interact.
, vol.11
, pp. 208-217
-
-
Hou, Y.M.1
Paplomatas, E.J.2
Gilbertson, R.L.3
-
83
-
-
0031697791
-
Molecular evolution of a host-range gene in geminiviruses infecting asexual populations of Eupatorium makinoi
-
Yahara T, Ooi K, Oshita S, Ishii I, Ikegami M. 1998. Molecular evolution of a host-range gene in geminiviruses infecting asexual populations of Eupatorium makinoi. Genes Genet. Syst. 73:137-141.
-
(1998)
Genes Genet. Syst.
, vol.73
, pp. 137-141
-
-
Yahara, T.1
Ooi, K.2
Oshita, S.3
Ishii, I.4
Ikegami, M.5
-
84
-
-
79551592145
-
Population genetic analysis of Tomato spotted wilt virus on peanut in North Carolina and Virginia
-
Kaye AC, Moyer JW, Parks EJ, Carbone I, Cubeta MA. 2011. Population genetic analysis of Tomato spotted wilt virus on peanut in North Carolina and Virginia. Phytopathology 101:147-153.
-
(2011)
Phytopathology
, vol.101
, pp. 147-153
-
-
Kaye, A.C.1
Moyer, J.W.2
Parks, E.J.3
Carbone, I.4
Cubeta, M.A.5
-
85
-
-
51949109019
-
Cross-species virus transmission and the emergence of new epidemic diseases
-
Parrish CR, Holmes EC, Morens DM, Park EC, Burke DS, Calisher CH, Laughlin CA, Saif LJ, Daszak P. 2008. Cross-species virus transmission and the emergence of new epidemic diseases. Microbiol. Mol. Biol. Rev. 72:457- 470.
-
(2008)
Microbiol. Mol. Biol. Rev.
, vol.72
, pp. 457-470
-
-
Parrish, C.R.1
Holmes, E.C.2
Morens, D.M.3
Park, E.C.4
Burke, D.S.5
Calisher, C.H.6
Laughlin, C.A.7
Saif, L.J.8
Daszak, P.9
-
86
-
-
0031164829
-
Molecular phylogeny of geminivirus infecting wild plants in Japan
-
Ooi K, Ohshita S, Ishii I, Yahara T. 1997. Molecular phylogeny of geminivirus infecting wild plants in Japan. J. Plant Res. 110:247-257.
-
(1997)
J. Plant Res.
, vol.110
, pp. 247-257
-
-
Ooi, K.1
Ohshita, S.2
Ishii, I.3
Yahara, T.4
-
87
-
-
0346245525
-
Breakdown of resistance in cotton to cotton leaf curl disease in Pakistan
-
doi:10.1111/j.1365-3059.2003.00893.x
-
Mansoor S, Amin I, Iram S, Hussain M, Zafar Y, Malik KA, Briddon RW. 2003. Breakdown of resistance in cotton to cotton leaf curl disease in Pakistan. Plant Pathol. 52:784. doi:10.1111/j.1365-3059.2003.00893.x.
-
(2003)
Plant Pathol.
, vol.52
, pp. 784
-
-
Mansoor, S.1
Amin, I.2
Iram, S.3
Hussain, M.4
Zafar, Y.5
Malik, K.A.6
Briddon, R.W.7
-
88
-
-
77955276651
-
Cotton leaf curl disease in resistant cotton is associated with a single begomovirus that lacks an intact transcriptional activator protein
-
Amrao L, Amin I, Shahid MS, Briddon RW, Mansoor S. 2010. Cotton leaf curl disease in resistant cotton is associated with a single begomovirus that lacks an intact transcriptional activator protein. Virus Res. 152:153- 163.
-
(2010)
Virus Res.
, vol.152
, pp. 153-163
-
-
Amrao, L.1
Amin, I.2
Shahid, M.S.3
Briddon, R.W.4
Mansoor, S.5
|