The first DNA 1-like α satellites in association with New World begomoviruses in natural infections

Virology

Volumn 404, Issue 2, 2010, Pages 148-157

  Paprotka, T ^a   Metzler, V ^a   Jeske, H ^a  

^a UNIVERSITY OF STUTTGART   (Germany)

Author keywords

Alpha satellite; Arabidopsis thaliana; Begomovirus; DNA 1; Geminivirus; Rolling circle amplification

Indexed keywords

SATELLITE DNA; VIRUS DNA;

ARABIDOPSIS; ARTICLE; BEGOMOVIRUS; CLEOME LEAF CRUMPLE VIRUS; CONTROLLED STUDY; DNA HAIRPIN; DNA SEQUENCE; EUPHORBIA MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; VIRAL GENETICS; VIRAL PLANT DISEASE; VIRUS GENOME; VIRUS ISOLATION; WEED;

AMINO ACID SEQUENCE; BEGOMOVIRUS; BRAZIL; DNA, SATELLITE; DNA, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANTS; VIRAL PROTEINS;

EID: 77954535850     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2010.05.003     Document Type: Article

References (54)

1. Abouzid A.M., Hiebert E., Strandberg J.O. Cloning, identification and partial sequencing of a new geminivirus infecting Brassicaceae. Phytopathology 1992, 82:1070.
2. Akbergenov R., Si-Ammour A., Blevins T., Amin I., Kutter C., Vanderschuren H., Zhang P., Gruissem W., Meins F., Hohn T., Pooggin M.M. Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Res. 2006, 34:462-471.
3. Alberter B., Ali Rezaian M., Jeske H. Replicative intermediates of Tomato leaf curl virus and its satellite DNAs. Virology 2005, 331:441-448.
4. Andrade E.C., Manhani G.G., Alfenas P.F., Calegario R.F., Fontes E.P., Zerbini F.M. Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp., forms pseudorecombinants with begomoviruses from tomato but not from Sida. J. Gen. Virol. 2006, 87:3687-3696.
5. Blevins T., Rajeswaran R., Shivaprasad P.V., Beknazariants D., Si-Ammour A., Park H.S., Vazquez F., Robertson D., Meins F., Hohn T., Pooggin M.M. Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res. 2006, 34:6233-6246.
6. Briddon R.W., Stanley J. Subviral agents associated with plant single-stranded DNA viruses. Virology 2006, 344:198-210.
7. Briddon R.W., Bull S.E., Amin I., Mansoor S., Bedford I.D., Rishi N., Siwatch S.S., Zafar Y., Abdel-Salam A.M., Markham P.G. Diversity of DNA 1: a satellite-like molecule associated with monopartite begomovirus-DNA beta complexes. Virology 2004, 324:462-474.
8. Briddon R.W., Brown J.K., Moriones E., Stanley J., Zerbini M., Zhou X., Fauquet C.M. Recommendations for the classification and nomenclature of the DNA-beta satellites of begomoviruses. Arch. Virol. 2008, 153:763-781.
9. Castillo-Urquiza G.P., Beserra J.E., Bruckner F.P., Lima A.T., Varsani A., Alfenas-Zerbini P., Zerbini M.F. Six novel begomoviruses infecting tomato and associated weeds in southeastern Brazil. Arch. Virol. 2008, 153:1985-1989.
10. Dean F.B., Nelson J.R., Giesler T.L., Lasken R.S. Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 2001, 11:1095-1099.
11. Duffy S., Holmes E.C. Multiple introductions of the Old World begomovirus Tomato yellow leaf curl virus into the New World. Appl. Environ. Microbiol. 2007, 73:7114-7117.
12. Duffy S., Holmes E.C. Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus. J. Virol. 2008, 82:957-965.
13. Fauquet C.M., Briddon R.W., Brown J.K., Moriones E., Stanley J., Zerbini M., Zhou X. Geminivirus strain demarcation and nomenclature. Arch. Virol. 2008, 153:783-821.
14. Fernandes F.R., de Albuquerque L.C., de Britto Giordano L., Boiteux L.S., de Avila A.C., Inoue-Nagata A.K. Diversity and prevalence of Brazilian bipartite Begomovirus species associated to tomatoes. Virus Genes 2008, 36:251-258.
15. Ferreira P.T., Lemos T.O., Nagata T., Inoue-Nagata A.K. One-step cloning approach for construction of agroinfectious begomovirus clones. J. Virol. Methods 2008, 147:351-354.
16. Garcia-Andres S., Accotto G.P., Navas-Castillo J., Moriones E. Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin. Virology 2007, 359:302-312.
17. Greathead A. Bemisia tabaci: a literature survey. Host Plants 1986, CABI, Inst Biol Control, Silwood Park. C. MJW (Ed.).
18. Grigoras I., Timchenko T., Katul L., Grande-Perez A., Vetten H.J., Gronenborn B. Reconstitution of authentic nanovirus from multiple cloned DNAs. J. Virol. 2009, 83:10778-10787.
19. Gronenborn B. Nanoviruses: genome organisation and protein function. Vet. Microbiol. 2004, 98:103-109.
20. Haible D., Kober S., Jeske H. Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. J. Virol. Methods 2006, 135:9-16.
21. Homs M., Kober S., Kepp G., Jeske H. Mitochondrial plasmids of sugar beet amplified via rolling circle method detected during curtovirus screening. Virus Res. 2008, 136:124-129.
22. Inoue-Nagata A.K., Albuquerque L.C., Rocha W.B., Nagata T. A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. J. Virol. Methods 2004, 116:209-211.
23. Jeske H. Geminiviruses. Curr. Top. Microbiol. Immunol. 2009, Vol. 331:185-226. Springer, Berlin; Heidelberg. E.-M. De Villiers, H. zur Hausen (Eds.).
24. Jeske H., Gotthardt D., Kober S. In planta cloning of geminiviral DNA: the true Sida micrantha mosaic virus. J. Virol. Methods 2010, 163:301-308.
25. Jovel J., Preiss W., Jeske H. Characterization of DNA intermediates of an arising geminivirus. Virus Res. 2007, 130:63-70.
26. Jovel J., Reski G., Rothenstein D., Ringel M., Frischmuth T., Jeske H. Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus. Arch Virol 2004, 149:829-841.
27. Knierim D., Maiss E. Application of Phi29 DNA polymerase in identification and full-length clone inoculation of tomato yellow leaf curl Thailand virus and tobacco leaf curl Thailand virus. Arch. Virol. 2007, 152:941-954.
28. Lee S., Stenger D.C., Bisaro D.M., Davis K.R. Identification of loci in Arabidopsis that confer resistance to geminivirus infection. Plant J. 1994, 6:525-535.
29. Liu L., van Tonder T., Pietersen G., Davies J.W., Stanley J. Molecular characterization of a subgroup I geminivirus from a legume in South Africa. J. Gen. Virol. 1997, 78:2113-2117.
30. Mansoor S., Khan S.H., Bashir A., Saeed M., Zafar Y., Malik K.A., Briddon R., Stanley J., Markham P.G. Identification of a novel circular single-stranded DNA associated with cotton leaf curl disease in Pakistan. Virology 1999, 259:190-199.
31. Mansoor S., Briddon R.W., Zafar Y., Stanley J. Geminivirus disease complexes: an emerging threat. Trends Plant Sci. 2003, 8:128-134.
32. Morales F.J. History and current distribution of begomoviruses in Latin America. Adv. Virus Res. 2006, 67:127-162.
33. Morales F.J., Anderson P.K. The emergence and dissemination of whitefly-transmitted geminiviruses in Latin America. Arch. Virol. 2001, 146:415-441.
34. Morales F.J., Jones P.G. The ecology and epidemiology of whitefly-transmitted viruses in Latin America. Virus Res. 2004, 100:57-65.
35. Nawaz-ul-Rehman M.S., Mansoor S., Briddon R.W., Fauquet C.M. Maintenance of an old world betasatellite by a new world helper begomovirus and possible rapid adaptation of the betasatellite. J. Virol. 2009, 83:9347-9355.
36. Ndunguru J., Taylor N.J., Yadav J., Aly H., Legg J.P., Aveling T., Thompson G., Fauquet C.M. Application of FTA technology for sampling, recovery and molecular characterization of viral pathogens and virus-derived transgenes from plant tissues. Virol. J. 2005, 2:45.
37. Okunade A.L. Ageratum conyzoides L. (Asteraceae). Fitoterapia 2002, 73:1-16.
38. Owor B.E., Shepherd D.N., Taylor N.J., Edema R., Monjane A.L., Thomson J.A., Martin D.P., Varsani A. Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. J. Virol. Methods 2007, 140:100-105.
39. Paprotka T., Boiteux L.S., Fonseca M.E., Resende R.O., Jeske H., Faria J.C., Ribeiro S.G. Genomic diversity of sweet potato geminiviruses in a Brazilian germplasm bank. Virus Res. 2010, 149:224-233.
40. Paprotka T., Metzler V., Jeske H. The complete nucleotide sequence of a new bipartite Begomovirus species from Brazil infecting Abutilon. Arch. Virol. 2010, 155:813-816.
41. Parrella G., Scassillo L., Crescenzi A., Nappo A.G. Typing of tomato yellow leaf curl viruses and their vector in Italy. Commun. Agric. Appl. Biol. Sci. 2006, 71:1229-1236.
42. Pita J.S., Fondong V.N., Sangare A., Otim-Nape G.W., Ogwal S., Fauquet C.M. Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda. J. Gen. Virol. 2001, 82:655-665.
43. Raja P., Sanville B.C., Buchmann R.C., Bisaro D.M. Viral genome methylation as an epigenetic defense against geminiviruses. J. Virol. 2008, 82:8997-9007.
44. Ribeiro S.G., Ambrozevicius L.P., Avila A.C., Bezerra I.C., Calegario R.F., Fernandes J.J., Lima M.F., de Mello R.N., Rocha H., Zerbini F.M. Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil. Arch. Virol. 2003, 148:281-295.
45. Saunders K., Stanley J. A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: evidence for interfamilial recombination between plant DNA viruses. Virology 1999, 264:142-152.
46. Saunders K., Bedford I.D., Briddon R.W., Markham P.G., Wong S.M., Stanley J. A unique virus complex causes Ageratum yellow vein disease. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:6890-6895.
47. Saunders K., Bedford I.D., Stanley J. Adaptation from whitefly to leafhopper transmission of an autonomously replicating nanovirus-like DNA component associated with Ageratum yellow vein disease. J. Gen. Virol. 2002, 83:907-913.
48. Schubert J., Habekuss A., Kazmaier K., Jeske H. Surveying cereal-infecting geminiviruses in Germany-diagnostics and direct sequencing using rolling circle amplification. Virus Res. 2007, 127:61-70.
49. Simmons A.M., Harrison H.F., Ling K.S. Forty-nine new host plant species for Bemisia tabaci (Hemiptera: Aleyrodidae). Entomol. Sci. 2008, 11:385-390.
50. Stanley J. Subviral DNAs associated with geminivirus disease complexes. Vet. Microbiol. 2004, 98:121-129.
51. Valverde R.A., Clark C.A., Valkonen J.P. Virus and virus disease complexes of sweetpotato. Plant Viruses 2007, 1:116-126.
52. Wege C., Gotthardt R.D., Frischmuth T., Jeske H. Fulfilling Koch's postulates for Abutilon mosaic virus. Arch. Virol. 2000, 145:2217-2225.
53. Wisler G.C., Duffus J.E. A century of plant virus management in the Salinas Valley of California, 'East of Eden'. Virus Res. 2000, 71:161-169.
54. Wu C.Y., Lai Y.C., Lin N.S., Hsu Y.H., Tsai H.T., Liao J.Y., Hu C.C. A simplified method of constructing infectious clones of begomovirus employing limited restriction enzyme digestion of products of rolling circle amplification. J. Virol. Methods 2008, 147:355-359.