Two new natural begomovirus recombinants associated with the tomato yellow leaf curl disease co-exist with parental viruses in tomato epidemics in Italy

Virus Research

Volumn 143, Issue 1, 2009, Pages 15-23

  Davino, Salvatore ^a   Napoli, Chiara ^b   Dellacroce, Chiara ^b   Miozzi, Laura ^b   Noris, Emanuela ^b   Davino, Mario ^c   Accotto, Gian Paolo ^b  

^a UNIVERSITY OF PALERMO   (Italy)

^b INSTITUTE FOR SUSTAINABLE PLANT PROTECTION   (Italy)

^c UNIVERSITY OF CATANIA   (Italy)

Author keywords

Geminiviridae; Recombination; Sicily; Tomato; TYLCSV; TYLCV

Indexed keywords

ARTICLE; BEGOMOVIRUS; ITALY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TOMATO; TOMATO YELLOW LEAF CURL DISEASE; TOMATO YELLOW LEAF CURL SARDINIA VIRUS; TOMATO YELLOW LEAF CURL VIRUS; VIRAL PLANT DISEASE; VIRUS RECOMBINANT; VIRUS STRAIN;

ANIMALS; BASE SEQUENCE; BEGOMOVIRUS; CLONING, MOLECULAR; DNA, INTERGENIC; DNA, RECOMBINANT; DNA, VIRAL; HEMIPTERA; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PLANT DISEASES; SEQUENCE ANALYSIS, DNA; SICILY; VIRULENCE;

ALEYRODIDAE; BEGOMOVIRUS; GEMINIVIRIDAE; LYCOPERSICON ESCULENTUM; TOMATO GEMINIVIRUS; TOMATO YELLOW LEAF CURL SARDINIA VIRUS; TOMATO YELLOW LEAF CURL VIRUS;

EID: 67349096322     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2009.03.001     Document Type: Article

References (37)

1. Castillo A.G., Collinet D., Deret S., Kashoggi A., and Bejarano E.R. Dual interaction of plant PCNA with geminivirus replication accessory protein (REn) and viral replication protein (Rep). Virology 312 (2003) 381-394
2. Crespi S., Noris E., Vaira A.M., and Accotto G.P. Molecular characterization of cloned DNA from tomato yellow leaf curl virus isolate from Sicily. Phytopathologia Mediterr. 34 (1995) 93-99
3. Czosnek H., and Laterrot H. A worldwide survey of Tomato yellow leaf curl viruses. Arch. Virol. 142 (1997) 1391-1406
4. Davino S., Davino M., and Accotto G.P. A single-tube PCR assay for detecting viruses and their recombinants that cause tomato yellow leaf curl disease in the Mediterranean basin. J. Virol. Methods 147 (2008) 93-98
5. Davino S., Napoli C., Davino M., and Accotto G.P. Spread of Tomato yellow leaf curl virus in Sicily: partial displacement of another geminivirus originally present. Eur. J. Plant Pathol. 114 (2006) 293-299
6. Fauquet C.M., Briddon R.W., Brown J.K., Moriones E., Stanley J., Zerbini M., and Zhou X. Geminivirus strain demarcation and nomenclature. Arch. Virol. 153 (2008) 783-821
7. García-Andrés S., Monci F., Navas-Castillo J., and Moriones E. Begomovirus genetic diversity in the native plant reservoir Solanum nigrum: evidence for the presence of a new virus species of recombinant nature. Virology 350 (2006) 433-442
8. García-Andrés S., Accotto G.P., Navas-Castillo J., and Moriones E. Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin. Virology 359 (2007) 302-312
9. García-Andrés S., Tomás D.M., Sánchez-Campos S., Navas-Castillo J., and Moriones E. Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease associated begomoviruses. Virology 365 (2007) 210-219
10. Grimsley N., Hohn T., Davies J.W., and Hohn B. Agrobacterium-mediated delivery of infectious maize streak virus into maize plants. Nature 325 (1987) 177-179
11. Gutierrez C. Geminivirus DNA replication. Cell. Mol. Life Sci. 56 (1999) 313-329
12. Haible D., Kober S., and Jeske H. Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. J. Virol. Methods 135 (2006) 9-16
13. Hanley-Bowdoin L., Settlage S.B., Orozco B.M., Nagar S., and Robertson D. Geminiviruses-models for plant DNA replication, transcription and cell cycle regulation. Crit. Rev. Biochem. Mol. Biol. 35 (2000) 105-140
14. Hofacker I.L. Vienna RNA secondary structure server. Nucleic Acids Res. 31 (2003) 3429-3431
15. Jupin I., Hericourt F., Benz B., and Gronenborn B. DNA replication specificity of TYLCV geminivirus is mediated by the amino-terminal 116 amino acids of the Rep protein. FEBS Lett. 362 (1995) 116-120
16. Kheyr-Pour A., Bendahmane M., Matzeit V., Accotto G.P., Crespi S., and Gronenborn B. Tomato yellow leaf curl virus from Sardinia is a whitefly-transmitted monopartite geminivirus. Nucleic Acids Res. 19 (1991) 6763-6769
17. Laufs J., Traut W., Heyraud F., Matzeit V., Rogers S.G., Schell J., and Gronenborn B. In-vitro cleavage and joining at the viral origin of replication by the replication initiator protein of Tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 3879-3883
18. Lazarowitz S.G. Geminiviruses: genome structure and gene-function. Crit. Rev. Plant Sci. 11 (1992) 327-349
19. Lefeuvre, P., Lett, J.M., Reynaud, B., Martin, D.P., 2007 Avoidance of protein fold disruption in natural virus recombinants. PLoS Pathog 3(11) e181. doi:10.1371/journal.ppat.0030181.
20. Monci F., Sanchez-Campos S., Navas-Castillo J., and Moriones E. A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology 303 (2002) 317-326
21. Morilla G., Krenz B., Jeske H., Bejarano E.R., and Wege C. Tete a tete of Tomato yellow leaf curl virus and Tomato yellow leaf curl Sardinia virus in single nuclei. J. Virol. 78 (2004) 10715-10723
22. Moriones E., and Navas-Castillo J. Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Virus Res. 71 (2000) 123-134
23. Navas-Castillo J., Sanchez-Campos S., Noris E., Louro D., Accotto G.P., and Moriones E. Natural recombination between Tomato yellow leaf curl virus-Is and Tomato leaf curl virus. J. Gen. Virol. 81 (2000) 2797-2801
24. Noris E., Vaira A.M., Caciagli P., Masenga V., Gronenborn B., and Accotto G.P. Amino Acids in the capsid protein of Tomato yellow leaf curl virus that are crucial for systemic infection, particle formation, and insect transmission. J. Virol. 72 (1998) 10050-10057
25. Quinones D., Fonseca D., Martinez Y., and Accotto G.P. First report of Tomato yellow leaf curl virus infecting pepper plants in Cuba. Plant Dis. 86 (2002) 73
26. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual Cold Spring Harbor Laboratory (1989), Cold Spring Harbor, New York
27. Sanz A.I., Fraile A., García-Arenal F., Zhou X., Robinson D.J., Khalid S., Butt T., and Harrison B.D. Multiple infection, recombination and genome relationships among Begomovirus isolates found in cotton and other plants in Pakistan. J. Gen. Virol. 81 (2000) 1839-1849
28. Saunders K., Lucy A., and Stanley J. DNA forms of the geminivirus African cassava mosaic-virus consistent with a rolling circle mechanism of replication. Nucleic Acids Res. 19 (1991) 2325-2330
29. Settlage S.B., See R.G., and Hanley-Bowdoin L. Geminivirus C3 protein: replication enhancement and protein interactions. J. Virol. 15 (2005) 9885-9895
30. Stanley J. Analysis of African cassava mosaic-virus recombinants suggests strand nicking occurs within the conserved nonanucleotide motif during the initiation of rolling circle DNA-replication. Virology 206 (1995) 707-712
31. Stanley J., Bisaro D.M., Briddon R.W., Brown J.K., Fauquet C.M., Harrison B.D., Rybicki E.P., and Stenger D.C. Geminiviridae. In: Fauquet C.M., Mayo M.A., Maniloff J., Desselberge U., and Ball L.A. (Eds). Virus Taxonomy. VIIIth Report of the ICTV (2005), Elsevier/Academic Press, London 301-326
32. Stenger D.C., Revington G.N., Stevenson M.C., and Bisaro D.M. Replicational release of geminivirus genomes from tandemly repeated copies-evidence for rolling-circle replication of a plant viral-DNA. Proc. Natl. Acad. Sci. U.S.A. 88 (1991) 8029-8033
33. Sunter G., and Bisaro D.M. Transactivation of geminivirus AR1 and BR1 gene expression by the viral AL2 gene product occurs at the level of transcription. Plant Cell 4 (1992) 1321-1331
34. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
35. Voinnet O., Pinto Y.M., and Baulcombe D.C. Suppression of gene silencing: a general strategy used by diverse DNA and RNA viruses of plants. Proc. Natl. Acad. Sci. USA 96 (1999) 14147-14152
36. Voinnet O., Rivas S., Mestre P., and Baulcombe D. An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus. Plant J. 33 (2003) 949-956
37. Zhou X., Liu Y., Robinson D.J., and Harrison B.D. Four DNA-A variants among Pakistani isolates of cotton leaf curl virus and their affinities to DNA-A of geminivirus isolates from okra. J. Gen. Virol. 79 (1998) 915-923