-
1
-
-
84855554695
-
Defning the boundaries and characterizing the landscape of functional genome expression in vascular tissues of Populus using shotgun proteomics
-
Abraham P, Adams R, Giannone R, Kalluri U, Ranjan P, Erickson B, Shah M, Tuskan G, Hettich R (2012) Defning the boundaries and characterizing the landscape of functional genome expression in vascular tissues of Populus using shotgun proteomics. J Proteome Res 11:449-460.
-
(2012)
J Proteome Res
, vol.11
, pp. 449-460
-
-
Abraham, P.1
Adams, R.2
Giannone, R.3
Kalluri, U.4
Ranjan, P.5
Erickson, B.6
Shah, M.7
Tuskan, G.8
Hettich, R.9
-
2
-
-
77951640946
-
A method and server for predicting damaging missense mutations
-
Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR (2010) A method and server for predicting damaging missense mutations. Nat Methods 7:248-249.
-
(2010)
Nat Methods
, vol.7
, pp. 248-249
-
-
Adzhubei, I.A.1
Schmidt, S.2
Peshkin, L.3
Ramensky, V.E.4
Gerasimova, A.5
Bork, P.6
Kondrashov, A.S.7
Sunyaev, S.R.8
-
4
-
-
0242361521
-
Regulation of fowering time and foral organ identify by a microRNA and its APETALA2-like target genes
-
Aukerman MJ, Sakai H (2003) Regulation of fowering time and foral organ identify by a microRNA and its APETALA2-like target genes. Plant Cell 15:2730-2741.
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
5
-
-
79955930975
-
Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression
-
Beaulieu J, Doerksen T, Boyle B, et al. (2011) Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression. Genetics 188:U197-U329.
-
(2011)
Genetics
, vol.188
-
-
Beaulieu, J.1
Doerksen, T.2
Boyle, B.3
-
6
-
-
80052883349
-
Reproductive competence from an annual and a perennial perspective
-
Bergonze S, Albani MC (2011) Reproductive competence from an annual and a perennial perspective. J Exp Bot 62:4415-4422.
-
(2011)
J Exp Bot
, vol.62
, pp. 4415-4422
-
-
Bergonze, S.1
Albani, M.C.2
-
7
-
-
33646720488
-
CO/FT regulatory module controls timing of fowering and seasonal growth cessation in trees
-
Bohlenius H, Huang T, Charbonnel-Campaa L, Brunner AM, Jansson S, Strauss SH, Nilsson O (2006) CO/FT regulatory module controls timing of fowering and seasonal growth cessation in trees. Science 312:1040-1043.
-
(2006)
Science
, vol.312
, pp. 1040-1043
-
-
Bohlenius, H.1
Huang, T.2
Charbonnel-Campaa, L.3
Brunner, A.M.4
Jansson, S.5
Strauss, S.H.6
Nilsson, O.7
-
8
-
-
65249085515
-
Nucleotide diversity among natural populations of a North American poplar (Populus bal-samifera, Salicaceae)
-
Breen AL, Glenn E, Yeager A, Olson MS (2009) Nucleotide diversity among natural populations of a North American poplar (Populus bal-samifera, Salicaceae). New Phytol 182:763-773.
-
(2009)
New Phytol
, vol.182
, pp. 763-773
-
-
Breen, A.L.1
Glenn, E.2
Yeager, A.3
Olson, M.S.4
-
9
-
-
33646153882
-
Gene expression and metabolite profling of Populus euphratica growing in the Negev Desert
-
Brosche M, Vinocur B, Alatalo ER, et al. (2005) Gene expression and metabolite profling of Populus euphratica growing in the Negev Desert. Genome Biol 6:R101.
-
(2005)
Genome Biol
, vol.6
-
-
Brosche, M.1
Vinocur, B.2
Alatalo, E.R.3
-
10
-
-
84861205566
-
Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides
-
Brown SD, Klingeman DM, Lu TS, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA (2012) Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. J Bacteriol 194:2382-2384.
-
(2012)
J Bacteriol
, vol.194
, pp. 2382-2384
-
-
Brown, S.D.1
Klingeman, D.M.2
Lu, T.S.3
Johnson, C.M.4
Utturkar, S.M.5
Land, M.L.6
Schadt, C.W.7
Doktycz, M.J.8
Pelletier, D.A.9
-
11
-
-
4644280905
-
Revisiting tree maturation and foral initiation in the poplar functional genomics era
-
Brunner AM, Nilsson O (2004) Revisiting tree maturation and foral initiation in the poplar functional genomics era. New Phytol 164:43-51.
-
(2004)
New Phytol
, vol.164
, pp. 43-51
-
-
Brunner, A.M.1
Nilsson, O.2
-
12
-
-
0036236913
-
Secondary xylem development in Arabidopsis: A model for wood formation
-
Chaffey N, Cholewa E, Regan S, Sundberg B (2002) Secondary xylem development in Arabidopsis: a model for wood formation. Physiol Plant 114:594-607.
-
(2002)
Physiol Plant
, vol.114
, pp. 594-607
-
-
Chaffey, N.1
Cholewa, E.2
Regan, S.3
Sundberg, B.4
-
13
-
-
77449121081
-
Populus community mega-genomics: Coming of age
-
Cheng Z-M, Tuskan GA (2009) Populus community mega-genomics: coming of age. Crit Rev Plant Sci 28:282-284.
-
(2009)
Crit Rev Plant Sci
, vol.28
, pp. 282-284
-
-
Cheng, Z.-M.1
Tuskan, G.A.2
-
14
-
-
77952367484
-
In the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus
-
Drost DR, Benedict CI, Berg A, et al. (2010) Diversifcation in the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus. Proc Natl Acad Sci USA 107:8492-8497.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8492-8497
-
-
Drost, D.R.1
Benedict, C.I.2
Berg, A.3
-
15
-
-
79959340303
-
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
-
Duplessis S, Cuomo CA, Lin Y-C, et al. (2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci USA 108:9166-9171.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 9166-9171
-
-
Duplessis, S.1
Cuomo, C.A.2
Lin, Y.-C.3
-
16
-
-
77956091699
-
Back to nature: Ecological genomics of loblolly pine (Pinus taeda, Pinaceae)
-
Eckert AJ, Bower AD, Gonzalez-Martinez SC, Wegrzyn JL, Coop G, Neale DB (2010) Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae). Mol Ecol 19:3789-3805.
-
(2010)
Mol Ecol
, vol.19
, pp. 3789-3805
-
-
Eckert, A.J.1
Bower, A.D.2
Gonzalez-Martinez, S.C.3
Wegrzyn, J.L.4
Coop, G.5
Neale, D.B.6
-
17
-
-
84856528872
-
Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome
-
Eckert AJ, Wegrzyn JL, Cumbie WP, Goldfarb B, Huber DA, Tolstikov V, Fiehn O, Neale DB (2012) Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome. New Phytol 193:890-902.
-
(2012)
New Phytol
, vol.193
, pp. 890-902
-
-
Eckert, A.J.1
Wegrzyn, J.L.2
Cumbie, W.P.3
Goldfarb, B.4
Huber, D.A.5
Tolstikov, V.6
Fiehn, O.7
Neale, D.B.8
-
19
-
-
79951748075
-
SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing
-
Geraldes A, Pang J, Thiesen N, Cezardt T, Moore R, Zhao Y, Tam A, Wang S, Friedmann M, Birol I (2011) SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing. Mol Ecol Res 11:81-92.
-
(2011)
Mol Ecol Res
, vol.11
, pp. 81-92
-
-
Geraldes, A.1
Pang, J.2
Thiesen, N.3
Cezardt, T.4
Moore, R.5
Zhao, Y.6
Tam, A.7
Wang, S.8
Friedmann, M.9
Birol, I.10
-
20
-
-
80052769418
-
Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types
-
Gottel NR, Castro HF, Kerley M, et al. (2011) Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Appl Environ Microbiol 77:5934-5944.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 5934-5944
-
-
Gottel, N.R.1
Castro, H.F.2
Kerley, M.3
-
21
-
-
18144387300
-
What genes make a tree a tree?
-
Groover AT (2005) What genes make a tree a tree? Trends Plant Sci 10:210-214.
-
(2005)
Trends Plant Sci
, vol.10
, pp. 210-214
-
-
Groover, A.T.1
-
22
-
-
79953043079
-
Adaptive evolution of the Populus tremula photoperiod pathway
-
Hall D, Ma X-F, Ingvarsson PK (2011) Adaptive evolution of the Populus tremula photoperiod pathway. Mol Ecol 20:1463-1474.
-
(2011)
Mol Ecol
, vol.20
, pp. 1463-1474
-
-
Hall, D.1
Ma, X.-F.2
Ingvarsson, P.K.3
-
23
-
-
79959726531
-
Genome-wide responses to drought in forest trees
-
Hamanishi ET, Campbell MM (2011) Genome-wide responses to drought in forest trees. Forestry 84:273-283.
-
(2011)
Forestry
, vol.84
, pp. 273-283
-
-
Hamanishi, E.T.1
Campbell, M.M.2
-
24
-
-
79551515472
-
Clonal reproduction and natural variation of Populus canescens patches
-
He CY, Zheng SX, Zhang JG, Duan AG, Zeng YF, Cui K (2010) Clonal reproduction and natural variation of Populus canescens patches. Tree Physiol 30:1383-1390.
-
(2010)
Tree Physiol
, vol.30
, pp. 1383-1390
-
-
He, C.Y.1
Zheng, S.X.2
Zhang, J.G.3
Duan, A.G.4
Zeng, Y.F.5
Cui, K.6
-
25
-
-
33747475595
-
Poplar FT2 shortens the juvenile phase and promotes seasonal fowering
-
Hsu C-Y, Liu Y, Luthe DS, Yuceer C (2006) Poplar FT2 shortens the juvenile phase and promotes seasonal fowering. Plant Cell 18:1846-1861.
-
(2006)
Plant Cell
, vol.18
, pp. 1846-1861
-
-
Hsu, C.-Y.1
Liu, Y.2
Luthe, D.S.3
Yuceer, C.4
-
26
-
-
79960615345
-
FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar
-
Hsu C-Y, Adams JP, Kim H, et al. (2011) FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. Proc Natl Acad Sci USA 108:10756-10761.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 10756-10761
-
-
Hsu, C.-Y.1
Adams, J.P.2
Kim, H.3
-
27
-
-
80052443858
-
The control of developmental phase transitions in plants
-
Huijser P, Schmid M (2011) The control of developmental phase transitions in plants. Development 138:4117-4129.
-
(2011)
Development
, vol.138
, pp. 4117-4129
-
-
Huijser, P.1
Schmid, M.2
-
28
-
-
33644874404
-
Gramene: A bird's eye view of cereal genomes
-
Jaiswal P, Ni J, Yap I, et al. (2006) Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res 34:D717-723.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Jaiswal, P.1
Ni, J.2
Yap, I.3
-
29
-
-
34250809009
-
Populus: A model system for plant biology
-
Jansson S, Douglas CJ (2007) Populus: a model system for plant biology. Annu Rev Plant Biol 58:435-458.
-
(2007)
Annu Rev Plant Biol
, vol.58
, pp. 435-458
-
-
Jansson, S.1
Douglas, C.J.2
-
30
-
-
80155178898
-
EST analysis of functional genes associated with cell wall biosynthesis and modif-cation in the secondary xylem of the yellow poplar (Liriodendron tulipifera) stem during early stage of tension wood formation
-
Jin H, Do J, Moon D, Noh EW, Kim W, Kwon M (2011) EST analysis of functional genes associated with cell wall biosynthesis and modif-cation in the secondary xylem of the yellow poplar (Liriodendron tulipifera) stem during early stage of tension wood formation. Planta 234:959-977.
-
(2011)
Planta
, vol.234
, pp. 959-977
-
-
Jin, H.1
Do, J.2
Moon, D.3
Noh, E.W.4
Kim, W.5
Kwon, M.6
-
31
-
-
80051500868
-
Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar, Populus balsamifera L
-
318
-
Keller SR, Levsen N, Ingvarsson PK, Olson MS, Tiffn P (2011) Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar, Populus balsamifera L. Genetics 188: 941-U 318.
-
(2011)
Genetics
, vol.188
-
-
Keller, S.R.1
Levsen, N.2
Ingvarsson, P.K.3
Olson, M.S.4
Tiffn, P.5
-
32
-
-
79956127892
-
1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa
-
1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa. Tree Genet Genom 7:617-627.
-
(2011)
Tree Genet Genom
, vol.7
, pp. 617-627
-
-
Labbe, J.1
Jorge, V.2
Kohler, A.3
Vion, P.4
Marcais, B.5
Bastien, C.6
Tuskan, G.A.7
Martin, F.8
Le Tacon, F.9
-
33
-
-
1642547069
-
Symbiotic sequencing for the Populus mesocosm
-
Martin E, Tuskan GA, DiFazio SP, Lammers P, Newcombe G, Podila GK (2004) Symbiotic sequencing for the Populus mesocosm. New Phytol 161:330-335.
-
(2004)
New Phytol
, vol.161
, pp. 330-335
-
-
Martin, E.1
Tuskan, G.A.2
Difazio, S.P.3
Lammers, P.4
Newcombe, G.5
Podila, G.K.6
-
34
-
-
40449120632
-
Symbiosis insights from the genome of the mycorrhizal basidiomycete Laccaria bicolor
-
Martin F, Aerts A, Ahren D, et al. (2008) Symbiosis insights from the genome of the mycorrhizal basidiomycete Laccaria bicolor. Nature 452:88-93.
-
(2008)
Nature
, vol.452
, pp. 88-93
-
-
Martin, F.1
Aerts, A.2
Ahren, D.3
-
35
-
-
0030691831
-
Floral induction in woody angiosperms
-
Meilan R (1997) Floral induction in woody angiosperms. New For 14:179-202.
-
(1997)
New for
, vol.14
, pp. 179-202
-
-
Meilan, R.1
-
36
-
-
77952175312
-
Populus CEN/TFL1 regulates frst onset of fowering, axillary meristem identity and dormancy release in Populus
-
Mohamed R, Wang CT, Ma C, et al. (2010) Populus CEN/TFL1 regulates frst onset of fowering, axillary meristem identity and dormancy release in Populus. Plant J 62:674-688.
-
(2010)
Plant J
, vol.62
, pp. 674-688
-
-
Mohamed, R.1
Wang, C.T.2
Ma, C.3
-
37
-
-
28244489048
-
A genomic approach to investigate developmental cell death in woody tissues of Populus trees
-
Moreau C, Aksenov N, Lorenzo MG, Segerman B, Funk C, Nilsson P, Jansson S, Tuominen H (2005) A genomic approach to investigate developmental cell death in woody tissues of Populus trees. Genome Biol 6:R34.
-
(2005)
Genome Biol
, vol.6
-
-
Moreau, C.1
Aksenov, N.2
Lorenzo, M.G.3
Segerman, B.4
Funk, C.5
Nilsson, P.6
Jansson, S.7
Tuominen, H.8
-
38
-
-
79953858658
-
No-nonsense functions for long noncoding RNAs
-
Nagano T, Fraser P (2011) No-nonsense functions for long noncoding RNAs. Cell 145:178-181.
-
(2011)
Cell
, vol.145
, pp. 178-181
-
-
Nagano, T.1
Fraser, P.2
-
39
-
-
78751550555
-
Forest genomics: Growing resources and applications
-
Neale DB, Kremer A (2011) Forest genomics: growing resources and applications. Nat Rev Genet 12:111-122.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 111-122
-
-
Neale, D.B.1
Kremer, A.2
-
40
-
-
48249122414
-
Genomic and physiological approaches to advancing forest tree improvement
-
Nelson CD, Johnsen KH (2008) Genomic and physiological approaches to advancing forest tree improvement. Tree Physiol 28:1135-1143.
-
(2008)
Tree Physiol
, vol.28
, pp. 1135-1143
-
-
Nelson, C.D.1
Johnsen, K.H.2
-
41
-
-
79952038026
-
The sucrose transporter family in Populus: The importance of a tonoplast PtaSUT4 to biomass and carbon partitioning
-
Payyavula RS, Tay KHC, Tsai CJ, Harding SA (2011) The sucrose transporter family in Populus: the importance of a tonoplast PtaSUT4 to biomass and carbon partitioning. Plant J 65:757-770.
-
(2011)
Plant J
, vol.65
, pp. 757-770
-
-
Payyavula, R.S.1
Tay, K.H.C.2
Tsai, C.J.3
Harding, S.A.4
-
42
-
-
33845467444
-
Some evolutionary consequences of being a tree
-
Petit RJ, Hampe A (2006) Some evolutionary consequences of being a tree. Annu Rev Ecol Evol Syst 37:187-214.
-
(2006)
Annu Rev Ecol Evol Syst
, vol.37
, pp. 187-214
-
-
Petit, R.J.1
Hampe, A.2
-
43
-
-
77952532061
-
The molecular physiology of poplars: Paving the way for knowledge-based biomass production
-
Polle A, Douglas C (2012) The molecular physiology of poplars: paving the way for knowledge-based biomass production. Plant Biol 12:239-241.
-
(2012)
Plant Biol
, vol.12
, pp. 239-241
-
-
Polle, A.1
Douglas, C.2
-
44
-
-
47049097043
-
An effcient method to identify differentially expressed genes in microarray experiments
-
Qin H, Feng T, Harding SA, Tsai CJ, Zhang S (2008) An effcient method to identify differentially expressed genes in microarray experiments. Bioinformatics 24:1583-1589.
-
(2008)
Bioinformatics
, vol.24
, pp. 1583-1589
-
-
Qin, H.1
Feng, T.2
Harding, S.A.3
Tsai, C.J.4
Zhang, S.5
-
45
-
-
33645502070
-
Genomics of hybrid poplar (Populus trichocarpa × deltoides) interacting with forest tent caterpillars (Malacosoma disstria): Normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defenses in poplar
-
Ralph S, Oddy C, Cooper D, et al. (2006) Genomics of hybrid poplar (Populus trichocarpa × deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defenses in poplar. Mol Ecol 15:1275-1297.
-
(2006)
Mol Ecol
, vol.15
, pp. 1275-1297
-
-
Ralph, S.1
Oddy, C.2
Cooper, D.3
-
46
-
-
79957891161
-
Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
-
Rampant PF, Lesur I, Boussardon C, et al. (2011) Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome. BMC Genomics 12:292.
-
(2011)
BMC Genomics
, vol.12
, pp. 292
-
-
Rampant, P.F.1
Lesur, I.2
Boussardon, C.3
-
48
-
-
80052392610
-
A white spruce gene catalog for conifer genome analyses
-
Rigault P, Boyle B, Lepage P, Cooke JEK, Bousquet J, MacKay JJ (2011) A white spruce gene catalog for conifer genome analyses. Plant Physiol 157:14-28.
-
(2011)
Plant Physiol
, vol.157
, pp. 14-28
-
-
Rigault, P.1
Boyle, B.2
Lepage, P.3
Cooke, J.E.K.4
Bousquet, J.5
MacKay, J.J.6
-
49
-
-
84855318177
-
Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus
-
Rodgers-Melnick E, Mane SP, Dharmawardhana P, Slavov GT, Crasta OR, Strauss SH, Brunner AM, DiFazio SP (2012) Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus. Genome Res 22:95-105.
-
(2012)
Genome Res
, vol.22
, pp. 95-105
-
-
Rodgers-Melnick, E.1
Mane, S.P.2
Dharmawardhana, P.3
Slavov, G.T.4
Crasta, O.R.5
Strauss, S.H.6
Brunner, A.M.7
Difazio, S.P.8
-
51
-
-
44949198553
-
Global expression profling in leaves of free-growing aspen
-
Sjodin A, Wissel K, Bylesjo M, Trygg J, Jansson S (2008) Global expression profling in leaves of free-growing aspen. BMC Plant Biol 8:61.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 61
-
-
Sjodin, A.1
Wissel, K.2
Bylesjo, M.3
Trygg, J.4
Jansson, S.5
-
52
-
-
84867402003
-
Resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
-
(in press). doi:10.1111/j.1469-8137.2012.04258.x
-
Slavov GT, DiFazio SP, Martin J, et al. (2012) Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. New Phytol (in press). doi:10.1111/j.1469- 8137.2012.04258.x.
-
(2012)
New Phytol
-
-
Slavov, G.T.1
Difazio, S.P.2
Martin, J.3
-
53
-
-
0036898429
-
Populus: Arabidopsis for forestry. Do we need a model tree?
-
Taylor G (2002) Populus: Arabidopsis for forestry. Do we need a model tree? Ann Bot 90:681-689.
-
(2002)
Ann Bot
, vol.90
, pp. 681-689
-
-
Taylor, G.1
-
54
-
-
84855792250
-
The transcrip-tome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional trade offs in an obligate symbi-ont
-
Tisserant E, Kohler A, Dozolme-Seddas P et al. (2012) The transcrip-tome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional trade offs in an obligate symbi-ont. New Phytol 193:755-769.
-
(2012)
New Phytol
, vol.193
, pp. 755-769
-
-
Tisserant, E.1
Kohler, A.2
Dozolme-Seddas, P.3
-
55
-
-
79959565517
-
Poplar genome microarrays
-
Joshi CS, DiFazio SP, Kole C (eds), Science Publishers, Enfeld, NH
-
Tsai CJ, Ranjan P, DiFazio S P, Tuskan GA, Johnson V (2011) Poplar genome microarrays. In: Joshi CS, DiFazio SP, Kole C (eds) Genetics, genomics and breeding of poplar. Science Publishers, Enfeld, NH, p p 112-127.
-
(2011)
Genetics, Genomics and Breeding of Poplar
, pp. 112-127
-
-
Tsai, C.J.1
Ranjan, P.2
Difazio, S.P.3
Tuskan, G.A.4
Johnson, V.5
-
56
-
-
1442291078
-
Poplar genomics is getting popular: The impact of the poplar genome project on tree research
-
Tuskan GA, DiFazio SP, Teichmann T (2004) Poplar genomics is getting popular: the impact of the poplar genome project on tree research. Plant Biol 6:2-4.
-
(2004)
Plant Biol
, vol.6
, pp. 2-4
-
-
Tuskan, G.A.1
Difazio, S.P.2
Teichmann, T.3
-
57
-
-
33748760611
-
The genome of black cottonwood. Populus trichocarpa (Torr & Gray)
-
Tuskan GA, DiFazio S, Jansson S et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr & Gray). Science 313:1596-1604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
-
58
-
-
78549262404
-
Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: Oak
-
Ueno S, Le Provost G, Leger V, et al. (2010) Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. BMC Genomics 11:24.
-
(2010)
BMC Genomics
, vol.11
, pp. 24
-
-
Ueno, S.1
Le Provost, G.2
Leger, V.3
-
59
-
-
77449143418
-
Poplar and its bacterial endophytes: Coexistence and harmony
-
van der Lelie D, Taghavi S, Monchy S, et al. (2009) Poplar and its bacterial endophytes: coexistence and harmony. Crit Rev Plant Sci 28:346-358.
-
(2009)
Crit Rev Plant Sci
, vol.28
, pp. 346-358
-
-
Van Der Lelie, D.1
Taghavi, S.2
Monchy, S.3
-
60
-
-
79952261472
-
MiRNA control of vegetative phase change in trees
-
Wang JW, Park MY, Wang LJ, Koo Y, Chen XY, Weigel D, Poethig RS (2011) miRNA control of vegetative phase change in trees. PLoS Genet 7:e1002012.
-
(2011)
PLoS Genet
, vol.7
-
-
Wang, J.W.1
Park, M.Y.2
Wang, L.J.3
Koo, Y.4
Chen, X.Y.5
Weigel, D.6
Poethig, R.S.7
-
61
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
62
-
-
77957107435
-
Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem
-
Wegrzyn JL, Eckert AJ, Choi M, Lee JM, Stanton BJ, Sykes R, Davis MF, Tsai C-J, Neale DB (2010) Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem. New Phytol 188:515-532.
-
(2010)
New Phytol
, vol.188
, pp. 515-532
-
-
Wegrzyn, J.L.1
Eckert, A.J.2
Choi, M.3
Lee, J.M.4
Stanton, B.J.5
Sykes, R.6
Davis, M.F.7
Tsai, C.-J.8
Neale, D.B.9
-
63
-
-
80051585495
-
Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa. Arabidopsis thaliana and Glycine max
-
Weston DJ, Karve AA, Gunter LE, Jawdy SA, Yang X, Allen SM, Wullschleger SD (2011) Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max. Plant Cell Environ 34:1488-1506.
-
(2011)
Plant Cell Environ
, vol.34
, pp. 1488-1506
-
-
Weston, D.J.1
Karve, A.A.2
Gunter, L.E.3
Jawdy, S.A.4
Yang, X.5
Allen, S.M.6
Wullschleger, S.D.7
-
64
-
-
84860995838
-
From systems biology to photosynthesis and whole-plant physiology: A conceptual model for integrating multi-scale networks
-
Weston DJ, Hanson PJ, Norby RJ, Tuskan GA, Wullschleger SD (2012a) From systems biology to photosynthesis and whole-plant physiology: a conceptual model for integrating multi-scale networks. Plant Signal Behav 7:260-262.
-
(2012)
Plant Signal Behav
, vol.7
, pp. 260-262
-
-
Weston, D.J.1
Hanson, P.J.2
Norby, R.J.3
Tuskan, G.A.4
Wullschleger, S.D.5
-
65
-
-
84860672312
-
Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis and ftness
-
Weston DJ, Pelletier DA, Morrell-Falvey JL, et al. (2012b) Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis and ftness. Mol Plant Microbe Interact 25:765-778.
-
(2012)
Mol Plant Microbe Interact
, vol.25
, pp. 765-778
-
-
Weston, D.J.1
Pelletier, D.A.2
Morrell-Falvey, J.L.3
-
66
-
-
42549161069
-
Extending genomics to natural communities and ecosystems
-
Whitham TG, DiFazio SP, Schweitzer JA, Shuster SM, Allan GJ, Bailey JK, Woolbright SA (2008) Extending genomics to natural communities and ecosystems. Science 320:492-495.
-
(2008)
Science
, vol.320
, pp. 492-495
-
-
Whitham, T.G.1
Difazio, S.P.2
Schweitzer, J.A.3
Shuster, S.M.4
Allan, G.J.5
Bailey, J.K.6
Woolbright, S.A.7
-
67
-
-
0036846814
-
Genomics and the forest biology: Populus emerges as the perennial favorite
-
Wullschleger SD, Jansson S, Taylor G (2002a) Genomics and the forest biology: Populus emerges as the perennial favorite. Plant Cell 14:2651-2655.
-
(2002)
Plant Cell
, vol.14
, pp. 2651-2655
-
-
Wullschleger, S.D.1
Jansson, S.2
Taylor, G.3
-
69
-
-
77449141901
-
Populus responses to edaphic and climatic cues: Emerging evidence from systems biology research
-
Wullschleger SD, Weston DJ, Davis JM (2009) Populus responses to edaphic and climatic cues: emerging evidence from systems biology research. Crit Rev Plant Sci 28:368-374.
-
(2009)
Crit Rev Plant Sci
, vol.28
, pp. 368-374
-
-
Wullschleger, S.D.1
Weston, D.J.2
Davis, J.M.3
-
70
-
-
79957907391
-
Genes to ecosystems: Exploring the frontiers of ecology with one of the smallest biological units
-
Wymore AS, Keeley ATH, Yturralde KM, Schroer ML, Popper CR, Whitham TG (2011) Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units. New Phytol 191:19-36.
-
(2011)
New Phytol
, vol.191
, pp. 19-36
-
-
Wymore, A.S.1
Keeley, A.T.H.2
Yturralde, K.M.3
Schroer, M.L.4
Popper, C.R.5
Whitham, T.G.6
-
71
-
-
77449106478
-
Poplar genomics: State of the science
-
Yang X, Kalluri UC, DiFazio S P, Wullschleger SD, Tschaplinski TJ, Cheng ZM, Tuskan GA (2009) Poplar genomics: state of the science. Crit Rev Plant Sci 28:285-308.
-
(2009)
Crit Rev Plant Sci
, vol.28
, pp. 285-308
-
-
Yang, X.1
Kalluri, U.C.2
Difazio, S.P.3
Wullschleger, S.D.4
Tschaplinski, T.J.5
Cheng, Z.M.6
Tuskan, G.A.7
-
72
-
-
80053219980
-
Identifcation of candidate genes in Populus cell wall biosynthesis using text-mining, co-expression network and comparative genomics
-
Yang X, Ye C-Y, Bisaria A, Tuskan GA, Kalluri UC (2011a) Identifcation of candidate genes in Populus cell wall biosynthesis using text-mining, co-expression network and comparative genomics. Plant Sci 181:675-687.
-
(2011)
Plant Sci
, vol.181
, pp. 675-687
-
-
Yang, X.1
Ye, C.-Y.2
Bisaria, A.3
Tuskan, G.A.4
Kalluri, U.C.5
-
73
-
-
57749114494
-
The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants
-
Yang X, Kalluri UC, Jawdy S, Gunter LE, Yin TM, Tschaplinski TJ, Weston DJ, Ranjan P, Tuskan GA (2011b) The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants. Plant Physiol 148:1189-1200.
-
(2011)
Plant Physiol
, vol.148
, pp. 1189-1200
-
-
Yang, X.1
Kalluri, U.C.2
Jawdy, S.3
Gunter, L.E.4
Yin, T.M.5
Tschaplinski, T.J.6
Weston, D.J.7
Ranjan, P.8
Tuskan, G.A.9
-
74
-
-
79953331944
-
Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
-
Yang X, Tschaplinski TJ, Hurst GB, et al. (2011c) Discovery and annotation of small proteins using genomics, proteomics, and computational approaches. Genome Res 21:634-641.
-
(2011)
Genome Res
, vol.21
, pp. 634-641
-
-
Yang, X.1
Tschaplinski, T.J.2
Hurst, G.B.3
-
75
-
-
40449120616
-
Genome structure and emerging evidence of an incipient sex chromosome in Populus
-
Yin T, DiFazio SP, Gunter LE, et al. (2008) Genome structure and emerging evidence of an incipient sex chromosome in Populus. Genome Res 18:422-430.
-
(2008)
Genome Res
, vol.18
, pp. 422-430
-
-
Yin, T.1
Difazio, S.P.2
Gunter, L.E.3
|