Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa

New Phytologist

Volumn 196, Issue 3, 2012, Pages 713-725

  Slavov, Gancho T ^a,b   Difazio, Stephen P ^a   Martin, Joel ^c   Schackwitz, Wendy ^c   Muchero, Wellington ^d   Rodgers Melnick, Eli ^a   Lipphardt, Mindie F ^a   Pennacchio, Christa P ^c   Hellsten, Uffe ^c   Pennacchio, Len A ^c   Gunter, Lee E ^d   Ranjan, Priya ^d   Vining, Kelly ^e   Pomraning, Kyle R ^e   Wilhelm, Larry J ^f   Pellegrini, Matteo ^g   Mockler, Todd C ^h   Freitag, Michael ^e   Geraldes, Armando ⁱ   El Kassaby, Yousry A ⁱ   Mansfield, Shawn D ⁱ   Cronk, Quentin C B ⁱ   Douglas, Carl J ⁱ   Strauss, Steven H ^e   Rokhsar, Dan ^c   Tuskan, Gerald A ^d   more..

^a WEST VIRGINIA UNIVERSITY   (United States)

^b ABERYSTWYTH UNIVERSITY   (United Kingdom)

^c DOE JOINT GENOME INSTITUTE   (United States)

^d OAK RIDGE NATIONAL LABORATORY   (United States)

^e OREGON STATE UNIVERSITY   (United States)

^f OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^g UNIVERSITY OF CALIFORNIA   (United States)

^h DONALD DANFORTH PLANT SCIENCE CENTER   (United States)

ⁱ UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Allele frequency gradients; Black cottonwood (Populus trichocarpa); Genome resequencing; Linkage disequilibrium (LD); Population structure; Recombination

Indexed keywords

PLANT DNA;

ALLELE; CONSERVATION GENETICS; DICOTYLEDON; EVOLUTIONARY BIOLOGY; GENETIC DRIFT; GENOME; GENOMICS; GEOGRAPHICAL DISTRIBUTION; LIFE HISTORY THEORY; POLYMORPHISM; POPULATION SIZE; POPULATION STRUCTURE; RECOMBINATION; REPRODUCTIVE BIOLOGY; SUBPOPULATION;

ARTICLE; DNA METHYLATION; DNA SEQUENCE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENETIC DRIFT; GENETIC RECOMBINATION; GENETIC SELECTION; GENETICS; GENOMICS; GENOTYPING TECHNIQUE; GEOGRAPHY; METHODOLOGY; MOLECULAR EVOLUTION; PLANT GENOME; POPULUS; PRINCIPAL COMPONENT ANALYSIS; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM;

DNA METHYLATION; DNA, PLANT; EVOLUTION, MOLECULAR; GENE FREQUENCY; GENETIC ASSOCIATION STUDIES; GENETIC DRIFT; GENOME, PLANT; GENOMICS; GENOTYPING TECHNIQUES; GEOGRAPHY; LINKAGE DISEQUILIBRIUM; POLYMORPHISM, SINGLE NUCLEOTIDE; POPULUS; PRINCIPAL COMPONENT ANALYSIS; RECOMBINATION, GENETIC; SELECTION, GENETIC; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA;

POPULUS; POPULUS TRICHOCARPA;

EID: 84867402003     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2012.04258.x     Document Type: Article

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