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Volumn 121, Issue 6, 2010, Pages 1151-1170

Population structure and linkage disequilibrium unravelled in tetraploid potato

Author keywords

[No Author keywords available]

Indexed keywords

ASSOCIATION ANALYSIS; ASSOCIATION MAPPING; BAYESIAN APPROACHES; DISTANCE-BASED; GENETIC RELATIONSHIPS; GERMPLASMS; HIERARCHICAL CLUSTERING APPROACH; INFORMATION CONTENTS; LATIN AMERICANS; LINKAGE DISEQUILIBRIUM; MARKET SEGMENT; MICROSATELLITE ALLELES; POPULATION STRUCTURES; POTATO CULTIVARS; PRIMER COMBINATIONS; PRINCIPAL COORDINATE ANALYSIS; PROCESSING INDUSTRY; QTL MAPPING; QUANTITATIVE TRAIT LOCUS;

EID: 78649629456     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1379-5     Document Type: Article
Times cited : (87)

References (61)
  • 1
    • 33947323124 scopus 로고    scopus 로고
    • Association mapping of yield and its components in rice cultivars
    • Agrama H, Eizenga G, Yan W (2007) Association mapping of yield and its components in rice cultivars. Mol Breed 19: 341-356.
    • (2007) Mol Breed , vol.19 , pp. 341-356
    • Agrama, H.1    Eizenga, G.2    Yan, W.3
  • 3
    • 8544249196 scopus 로고    scopus 로고
    • Interval mapping of quantitative trait loci for resistance to late blight [Phytophthora infestans (Mont.) de Bary], height and maturity in a tetraploid population of potato (Solanum tuberosum subsp tuberosum)
    • Bradshaw JE, Pande B, Bryan GJ, Hackett CA, McLean K, Stewart HE, Waugh R (2004) Interval mapping of quantitative trait loci for resistance to late blight [Phytophthora infestans (Mont.) de Bary], height and maturity in a tetraploid population of potato (Solanum tuberosum subsp tuberosum). Genetics 168: 983-995.
    • (2004) Genetics , vol.168 , pp. 983-995
    • Bradshaw, J.E.1    Pande, B.2    Bryan, G.J.3    Hackett, C.A.4    McLean, K.5    Stewart, H.E.6    Waugh, R.7
  • 4
    • 37349012161 scopus 로고    scopus 로고
    • QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp tuberosum)
    • Bradshaw JE, Hackett CA, Pande B, Waugh R, Bryan GJ (2008) QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp tuberosum). Theor Appl Genet 116: 193-211.
    • (2008) Theor Appl Genet , vol.116 , pp. 193-211
    • Bradshaw, J.E.1    Hackett, C.A.2    Pande, B.3    Waugh, R.4    Bryan, G.J.5
  • 5
    • 33644781694 scopus 로고    scopus 로고
    • Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
    • Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172: 1165-1177.
    • (2006) Genetics , vol.172 , pp. 1165-1177
    • Breseghello, F.1    Sorrells, M.E.2
  • 6
    • 0001506104 scopus 로고    scopus 로고
    • Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping
    • Brownstein MJ, Carpten JD, Smith JR (1996) Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. Biotechniques 20: 1004-1010.
    • (1996) Biotechniques , vol.20 , pp. 1004-1010
    • Brownstein, M.J.1    Carpten, J.D.2    Smith, J.R.3
  • 7
    • 23944441980 scopus 로고    scopus 로고
    • QTL analysis of late blight resistance in a diploid potato family of Solanum phureja × S. stenotomum
    • Costanzo S, Simko I, Christ BJ, Haynes KG (2005) QTL analysis of late blight resistance in a diploid potato family of Solanum phureja × S. stenotomum. Theor Appl Genet 111: 609-617.
    • (2005) Theor Appl Genet , vol.111 , pp. 609-617
    • Costanzo, S.1    Simko, I.2    Christ, B.J.3    Haynes, K.G.4
  • 8
    • 42149113457 scopus 로고    scopus 로고
    • Association mapping of quality traits in potato (Solanum tuberosum L.)
    • D'hoop B, Paulo M, Mank R, van Eck H, van Eeuwijk F (2008) Association mapping of quality traits in potato (Solanum tuberosum L.). Euphytica 161: 47-60.
    • (2008) Euphytica , vol.161 , pp. 47-60
    • D'hoop, B.1    Paulo, M.2    Mank, R.3    van Eck, H.4    van Eeuwijk, F.5
  • 9
    • 4043171933 scopus 로고    scopus 로고
    • Assignment of allelic configuration in polyploids using the MAC-PR (microsatellite DNA allele counting-peak ratios) method
    • Esselink GD, Nybom H, Vosman B (2004) Assignment of allelic configuration in polyploids using the MAC-PR (microsatellite DNA allele counting-peak ratios) method. Theor Appl Genet 109: 402-408.
    • (2004) Theor Appl Genet , vol.109 , pp. 402-408
    • Esselink, G.D.1    Nybom, H.2    Vosman, B.3
  • 10
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software structure: a simulation study
    • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 11
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: an integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3. 0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
    • (2005) Evol Bioinform Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 12
    • 23944433157 scopus 로고    scopus 로고
    • Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.)
    • Feingold S, Lloyd J, Norero N, Bonierbale M, Lorenzen J (2005) Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.). Theor Appl Genet 111: 456-466.
    • (2005) Theor Appl Genet , vol.111 , pp. 456-466
    • Feingold, S.1    Lloyd, J.2    Norero, N.3    Bonierbale, M.4    Lorenzen, J.5
  • 13
    • 27744595871 scopus 로고    scopus 로고
    • Genetic diversity among alfalfa (Medicago sativa) cultivars coming from a breeding program, using SSR markers
    • Flajoulot S, Ronfort J, Baudouin P, Barre P, Huguet T, Huyghe C, Julier B (2005) Genetic diversity among alfalfa (Medicago sativa) cultivars coming from a breeding program, using SSR markers. Theor Appl Genet 111: 1420-1429.
    • (2005) Theor Appl Genet , vol.111 , pp. 1420-1429
    • Flajoulot, S.1    Ronfort, J.2    Baudouin, P.3    Barre, P.4    Huguet, T.5    Huyghe, C.6    Julier, B.7
  • 15
    • 0037705665 scopus 로고    scopus 로고
    • The lowdown on linkage disequilibrium
    • Gaut BS, Long AD (2003) The lowdown on linkage disequilibrium. Plant Cell 15: 1502-1506.
    • (2003) Plant Cell , vol.15 , pp. 1502-1506
    • Gaut, B.S.1    Long, A.D.2
  • 16
    • 1242265516 scopus 로고    scopus 로고
    • Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type
    • Gebhardt C, Ballvora A, Walkemeier B, Oberhagemann P, Schuler K (2004) Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type. Mol Breed 13: 93-102.
    • (2004) Mol Breed , vol.13 , pp. 93-102
    • Gebhardt, C.1    Ballvora, A.2    Walkemeier, B.3    Oberhagemann, P.4    Schuler, K.5
  • 19
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • Hudson RR, Slatkin M, Maddison WP (1992) Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 20
    • 3943085617 scopus 로고    scopus 로고
    • Association mapping in plant populations
    • M. S. Kang (Ed.), Wallingford: CAB International Publishing
    • Jannink J-L, Walsh B (2002) Association mapping in plant populations. In: Kang MS (ed) Quantitative genetics, genomics and plant breeding. CAB International Publishing, Wallingford, pp 59-68.
    • (2002) Quantitative Genetics, Genomics and Plant Breeding , pp. 59-68
    • Jannink, J.-L.1    Walsh, B.2
  • 21
    • 0029911935 scopus 로고    scopus 로고
    • Characterization of Solanum tuberosum simple sequence repeats and application to potato cultivar identification
    • Kawchuk LM, Lynch DR, Thomas J, Penner B, Sillito D, Kulcsar F (1996) Characterization of Solanum tuberosum simple sequence repeats and application to potato cultivar identification. Am Potato J 73: 325-335.
    • (1996) Am Potato J , vol.73 , pp. 325-335
    • Kawchuk, L.M.1    Lynch, D.R.2    Thomas, J.3    Penner, B.4    Sillito, D.5    Kulcsar, F.6
  • 22
    • 50949109921 scopus 로고    scopus 로고
    • Interval mapping of quantitative trait loci for corky ringspot disease resistance in a tetraploid population of potato (Solanum tuberosum subsp tuberosum)
    • Khu DM, Lorenzen J, Hackett CA, Love SL (2008) Interval mapping of quantitative trait loci for corky ringspot disease resistance in a tetraploid population of potato (Solanum tuberosum subsp tuberosum). Am J Potato Res 85: 129-139.
    • (2008) Am J Potato Res , vol.85 , pp. 129-139
    • Khu, D.M.1    Lorenzen, J.2    Hackett, C.A.3    Love, S.L.4
  • 23
    • 0027184458 scopus 로고
    • Automated DNA profiling employing multiplex amplification of short tandem repeat loci
    • Kimpton CP, Gill P, Walton A, Urquhart A, Millican ES, Adams M (1993) Automated DNA profiling employing multiplex amplification of short tandem repeat loci. Genome Res 3: 13-22.
    • (1993) Genome Res , vol.3 , pp. 13-22
    • Kimpton, C.P.1    Gill, P.2    Walton, A.3    Urquhart, A.4    Millican, E.S.5    Adams, M.6
  • 24
    • 5144221069 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars
    • Kraakman ATW, Niks RE, van den Berg PMMM, Stam P, van Eeuwijk FA (2004) Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168: 435-446.
    • (2004) Genetics , vol.168 , pp. 435-446
    • Kraakman, A.T.W.1    Niks, R.E.2    van den Berg, P.M.M.M.3    Stam, P.4    van Eeuwijk, F.A.5
  • 25
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • Kruglyak L (1999) Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat Genet 22: 139-144.
    • (1999) Nat Genet , vol.22 , pp. 139-144
    • Kruglyak, L.1
  • 26
    • 33846933954 scopus 로고    scopus 로고
    • Methods for linkage disequilibrium mapping in crops
    • Mackay I, Powell W (2007) Methods for linkage disequilibrium mapping in crops. Trends Plant Sci 12: 57-63.
    • (2007) Trends Plant Sci , vol.12 , pp. 57-63
    • Mackay, I.1    Powell, W.2
  • 27
    • 33745489468 scopus 로고    scopus 로고
    • QTL methodology for response curves on the basis of non-linear mixed models, with an illustration to senescence in potato
    • Malosetti M, Visser RGF, Celis-Gamboa C, van Eeuwijk FA (2006) QTL methodology for response curves on the basis of non-linear mixed models, with an illustration to senescence in potato. Theor Appl Genet 113: 288-300.
    • (2006) Theor Appl Genet , vol.113 , pp. 288-300
    • Malosetti, M.1    Visser, R.G.F.2    Celis-Gamboa, C.3    van Eeuwijk, F.A.4
  • 28
    • 34247853365 scopus 로고    scopus 로고
    • A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato
    • Malosetti M, van der Linden CG, Vosman B, van Eeuwijk FA (2007) A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato. Genetics 175: 879-889.
    • (2007) Genetics , vol.175 , pp. 879-889
    • Malosetti, M.1    van der Linden, C.G.2    Vosman, B.3    van Eeuwijk, F.A.4
  • 29
    • 33645067401 scopus 로고    scopus 로고
    • Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.)
    • Malysheva-Otto L, Ganal M, Roder M (2006) Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.). BMC Genet 7: 6.
    • (2006) BMC Genet , vol.7 , pp. 6
    • Malysheva-Otto, L.1    Ganal, M.2    Roder, M.3
  • 30
    • 0027290437 scopus 로고
    • A cytometric exercise in plant DNA histograms, with 2C values for 70 species
    • Marie D, Brown SC (1993) A cytometric exercise in plant DNA histograms, with 2C values for 70 species. Biol Cell 78: 41-51.
    • (1993) Biol Cell , vol.78 , pp. 41-51
    • Marie, D.1    Brown, S.C.2
  • 31
    • 0035983453 scopus 로고    scopus 로고
    • Sampling within the genome for measuring within-population diversity: trade-offs between markers
    • Mariette S, Le Corre V, Austerlitz F, Kremer A (2002) Sampling within the genome for measuring within-population diversity: trade-offs between markers. Mol Ecol 11: 1145-1156.
    • (2002) Mol Ecol , vol.11 , pp. 1145-1156
    • Mariette, S.1    Le Corre, V.2    Austerlitz, F.3    Kremer, A.4
  • 32
    • 0034128259 scopus 로고    scopus 로고
    • A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm
    • McGregor CE, Lambert CA, Greyling MM, Louw JH, Warnich L (2000) A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm. Euphytica 113: 135-144.
    • (2000) Euphytica , vol.113 , pp. 135-144
    • McGregor, C.E.1    Lambert, C.A.2    Greyling, M.M.3    Louw, J.H.4    Warnich, L.5
  • 33
    • 33847786259 scopus 로고    scopus 로고
    • Almost forgotten or latest practice? AFLP applications, analyses and advances
    • Meudt HM, Clarke AC (2007) Almost forgotten or latest practice? AFLP applications, analyses and advances. Trends Plant Sci 12: 106-117.
    • (2007) Trends Plant Sci , vol.12 , pp. 106-117
    • Meudt, H.M.1    Clarke, A.C.2
  • 35
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 36
    • 4344669547 scopus 로고    scopus 로고
    • In silico mapping of quantitative trait loci in maize
    • Parisseaux B, Bernardo R (2004) In silico mapping of quantitative trait loci in maize. Theor Appl Genet 109: 508-514.
    • (2004) Theor Appl Genet , vol.109 , pp. 508-514
    • Parisseaux, B.1    Bernardo, R.2
  • 38
    • 0035709514 scopus 로고    scopus 로고
    • Utilization of potato genetic resources in variety development
    • Pavek J, Corsini D (2001) Utilization of potato genetic resources in variety development. Am J Potato Res 78: 433-441.
    • (2001) Am J Potato Res , vol.78 , pp. 433-441
    • Pavek, J.1    Corsini, D.2
  • 40
    • 0034891633 scopus 로고    scopus 로고
    • Exploiting quantitative information in the analysis of dominant markers
    • Piepho H-P (2001) Exploiting quantitative information in the analysis of dominant markers. Theor Appl Genet 103: 462-468.
    • (2001) Theor Appl Genet , vol.103 , pp. 462-468
    • Piepho, H.-P.1
  • 41
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price AL (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904.
    • (2006) Nat Genet , vol.38 , pp. 904
    • Price, A.L.1
  • 42
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 45
    • 34548181563 scopus 로고    scopus 로고
    • What is the origin of the European potato? Evidence from Canary island landraces
    • Rios D, Ghislain M, Rodriguez F, Spooner DM (2007) What is the origin of the European potato? Evidence from Canary island landraces. Crop Sci 47: 1271-1280.
    • (2007) Crop Sci , vol.47 , pp. 1271-1280
    • Rios, D.1    Ghislain, M.2    Rodriguez, F.3    Spooner, D.M.4
  • 46
    • 0842330762 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of a Verticillium dahliae resistance quantitative trait locus in tetraploid potato (Solanum tuberosum) through a candidate gene approach
    • Simko I, Costanzo S, Haynes KG, Christ BJ, Jones RW (2004a) Linkage disequilibrium mapping of a Verticillium dahliae resistance quantitative trait locus in tetraploid potato (Solanum tuberosum) through a candidate gene approach. Theor Appl Genet 108: 217-224.
    • (2004) Theor Appl Genet , vol.108 , pp. 217-224
    • Simko, I.1    Costanzo, S.2    Haynes, K.G.3    Christ, B.J.4    Jones, R.W.5
  • 47
    • 3142703727 scopus 로고    scopus 로고
    • Mapping genes for resistance to Verticillium albo-atrum in tetraploid and diploid potato populations using haplotype association tests and genetic linkage analysis
    • Simko I, Haynes KG, Ewing EE, Costanzo S, Christ BJ, Jones RW (2004b) Mapping genes for resistance to Verticillium albo-atrum in tetraploid and diploid potato populations using haplotype association tests and genetic linkage analysis. Mol Genet Genomics 271: 522-531.
    • (2004) Mol Genet Genomics , vol.271 , pp. 522-531
    • Simko, I.1    Haynes, K.G.2    Ewing, E.E.3    Costanzo, S.4    Christ, B.J.5    Jones, R.W.6
  • 48
    • 33747850182 scopus 로고    scopus 로고
    • Assessment of linkage disequilibrium in potato genome with single nucleotide polymorphism markers
    • Simko I, Haynes KG, Jones RW (2006) Assessment of linkage disequilibrium in potato genome with single nucleotide polymorphism markers. Genetics 173: 2237-2245.
    • (2006) Genetics , vol.173 , pp. 2237-2245
    • Simko, I.1    Haynes, K.G.2    Jones, R.W.3
  • 50
    • 11244349699 scopus 로고    scopus 로고
    • Rapid individual identification by minisatellite variant repeat (MVR)-PCR at D1S8 locus using exponential law
    • Suenaga E, Nakamura H (2004) Rapid individual identification by minisatellite variant repeat (MVR)-PCR at D1S8 locus using exponential law. Anal Sci 20: 1629-1633.
    • (2004) Anal Sci , vol.20 , pp. 1629-1633
    • Suenaga, E.1    Nakamura, H.2
  • 52
    • 44449095982 scopus 로고    scopus 로고
    • Diversity and linkage disequilibrium analysis within a selected set of cultivated tomatoes
    • van Berloo R, Zhu A, Ursem R, Verbakel H, Gort G, van Eeuwijk F (2008) Diversity and linkage disequilibrium analysis within a selected set of cultivated tomatoes. Theor Appl Genet 117: 89-101.
    • (2008) Theor Appl Genet , vol.117 , pp. 89-101
    • van Berloo, R.1    Zhu, A.2    Ursem, R.3    Verbakel, H.4    Gort, G.5    van Eeuwijk, F.6
  • 53
    • 7144240003 scopus 로고
    • Mapping strategy for resistance genes in tomato based on RFLPs between cultivars: Cf9 (resistance to Cladosporium fulvum) on chromosome 1
    • van der Beek JG, Verkerk R, Zabel P, Lindhout P (1992) Mapping strategy for resistance genes in tomato based on RFLPs between cultivars: Cf9 (resistance to Cladosporium fulvum) on chromosome 1. Theor Appl Genet 84: 106-112.
    • (1992) Theor Appl Genet , vol.84 , pp. 106-112
    • van der Beek, J.G.1    Verkerk, R.2    Zabel, P.3    Lindhout, P.4
  • 58
    • 18244370820 scopus 로고    scopus 로고
    • Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions
    • Woodhead M, Russell J, Squirrell J, Hollingsworth PM, Mackenzie K, Gibby M, Powell W (2005) Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Mol Ecol 14: 1681-1695.
    • (2005) Mol Ecol , vol.14 , pp. 1681-1695
    • Woodhead, M.1    Russell, J.2    Squirrell, J.3    Hollingsworth, P.M.4    Mackenzie, K.5    Gibby, M.6    Powell, W.7
  • 60
    • 26444599671 scopus 로고    scopus 로고
    • Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL
    • Zhao H, Nettleton D, Soller M, Dekkers JCM (2005) Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL. Genet Res 86: 77-87.
    • (2005) Genet Res , vol.86 , pp. 77-87
    • Zhao, H.1    Nettleton, D.2    Soller, M.3    Dekkers, J.C.M.4
  • 61
    • 85164502327 scopus 로고    scopus 로고
    • Status and prospects of association mapping in plants
    • Zhu C, Gore M, Buckler ES, Yu J (2008) Status and prospects of association mapping in plants. Plant Genome 1: 5-20.
    • (2008) Plant Genome , vol.1 , pp. 5-20
    • Zhu, C.1    Gore, M.2    Buckler, E.S.3    Yu, J.4


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