Phylogeny and origins of holoparasitism in Orobanchaceae

American Journal of Botany

Volumn 100, Issue 5, 2013, Pages 971-983

  Mcneal, Joel R ^a   Bennett, Jonathan R ^b   Wolfe, Andrea D ^c   Mathews, Sarah ^d  

^a KENNESAW STATE UNIVERSITY   (United States)

^b Department of Biology   (United Kingdom)

^c OHIO STATE UNIVERSITY   (United States)

^d HARVARD UNIVERSITY   (United States)

Author keywords

Hemiparasite; Orobanchaceae; Parasitism; Phylogeny; Phytochrome

Indexed keywords

PHYTOCHROME; PLANT DNA; SPACER DNA;

CLADISTICS; DIVERGENCE; HEMIPARASITE; MOLECULAR ANALYSIS; PARASITIC PLANT; PARASITISM; PHOTOSYNTHESIS; PHYLOGENY; PHYSIOLOGY; PIGMENT; PLASTID; TROPHIC INTERACTION;

ANIMAL; ARTICLE; GENE EXPRESSION REGULATION; GENETICS; HEMIPARASITE; OROBANCHACEAE; PARASITISM; PARASITOLOGY; PHYLOGENY; SPECIES DIFFERENCE;

HEMIPARASITE; OROBANCHACEAE; PARASITISM; PHYLOGENY; PHYTOCHROME;

ANIMALS; DNA, INTERGENIC; DNA, PLANT; GENE EXPRESSION REGULATION, PLANT; OROBANCHACEAE; PHYLOGENY; SPECIES SPECIFICITY;

EID: 84877246976     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1200448     Document Type: Article

References (60)

1. APG III. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161: 105-121.
2. Armstrong, J. E., and A. W. Douglas. 1989. The ontogenetic basis for corolla aestivation in Scrophulariaceae. Bulletin of the Torrey Botanical Club 116: 378-389.
3. Baldwin, B. G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositae. Molecular Phylogenetics and Evolution 1: 3-16.
4. Beck, G. 1930. Orobanchaceae. In A. Engler [ed.], Das Pflanzenreich, vol. 4, 261. Engelmann, Leipzig, Germany.
5. Bellini, R. 1907. Criteri per una nuova classificazione delle Personatae (Scrophulariaceae et Rhinathaceae). Annals of Botany 6: 131-145.
6. Bennett, J. R., and S. Mathews. 2006; Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A. American Journal of Botany 93: 1039-1051.
7. Bentham, G. 1846. Scrophulariaceae. In A. De Candolle [ed.], Prodromus systematis naturalis regni vegetabilis, vol. 10, 180-586. Treutell & Wurtz, Paris, France.
8. Bentham, G. 1876. Scrophulariaceae. In G. Bentham and J. D. Hooker [eds.], Genera plantarum, 913-980. Reeve and Co., London, UK.
9. Boeshore, I. 1920. The morphological continuity of Scrophulariaceae and orobanchaceae. Contributions of the Botanical Laboratory of the Morris Arboretum 5: 139-177.
10. Bremer, K., A. Backlund, B. Sennblad, U. Swenson, K. Andreasen, M. Hjerston, M. Backlund, and B. Bremer. 2001. A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data with notes on possible higher level morphological synapomorphies. Plant Systematics and Evolution 229: 137-169.
11. Bruhl, P. 1919. On the systematic position of Lindenbergia, Lehmann. Journal of the Department of Science, University of Calcutta 2: 11-16.
12. Chuang, T. I., and L. R. Heckard. 1991. Generic realignment and synopsis of subtribe Castillejinae Scrophulariaceae-tribe Pediculareae. Systematic Botany 16: 644-666.
13. De La Harpe, A. C., N. Grobbelaar, and J. H. Visser. 1980. The ultrastructure of the chloroplast and the chlorophyll content of various South African parasitic flowering plants. Zeitschrift fur Pflanzenphysiologie 100: 85-90.
14. dePamphilis, C. W., N. D. Young, and A. D. Wolfe. 1997. Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: Many losses of photosynthesis and complex patterns of rate variation. Proceedings ofthe National Academy ofSciences, USA 94: 7367-7372.
15. Dong, L.-N., H. Wang, A. H. Wortley, L. Lu, and D.-Z. Li. 2013. Phylogenetic relationships in the Pterygiella complex (Orobanchaceae) inferred from molecular and morphological evidence. Botanical Journal of the Linnean Society 171: 491-507.
16. Fischer, E. 2004. Scrophulariaceae. In J. W. Kadereit [ed.], The families and genera of vascular plants, 333-432. Springer-Verlag, Berlin, Germany.
17. Franklin, K. A., and G. C. Whitelam. 2005. Phytochromes and shade- avoidance responses in plants. Annals of Botany 96: 169-175.
18. Gussarova, G., M. Popp, E. Vitek, and C. Brochmann. 2008. Molecular phylogeny and biogeography of the bipolar Euphrasia (Orobanchaceae): Recent radiations in an old genus. Molecular Phylogenetics and Evolution 48: 444-460.
19. Heide-Jorgensen, H. S. 2008. Parasitic flowering plants. Koninklijke Brill, Leiden, Netherlands.
20. Heide-J0rgensen, H. S., and J. Kuijt. 1995. The haustorium of the root parasite Triphysaria (Scrophulariaceae), with special reference to xy- lem bridge ultrastructure. American Journal of Botany 82: 782-797.
21. Hjertson, M. L. 1995. Taxonomy, phylogeny, and biogeography of Lindenbergia (scrophulariaceae). Botanical Journal of the Linnean Society 119: 265-321.
22. Kuijt, J. 1969. Biology of parasitic flowering plants. University of California Press, Berkeley, California, USA.
23. Larkin, M., G. Blackshields, N. Brown, R. Chenna, P. McGettigan, H. McWilliam, F. Valentin, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
24. Leslie, A. B., J. M. Beaulieu, H. S. Rai, P. R. Crane, M. J. Donoghue, and S. Mathews. 2012. Hemisphere-scale differences in conifer evolutionary dynamics. Proceedings of the National Academy of Sciences, USA 109: 16217-16221.
25. Maddison, D. R., and W. P. Maddison. 2003. MacClade 4.06: Analysis of phylogeny and character evolution. Sinauer, Sunderland, Massachusetts, USA.
26. Manen, J., C. Habashi, D. Jeanmonod, J. Park, and G. M. Schneeweiss.2004. Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences. Molecular Phylogenetics and Evolution 33: 482-500.
27. Marais, W. 1980. Two new gamopetalous families, Cyclocheilaceae and Nesogenaceae, for extra-Australian 'Dicrastylidaceae'. Kew Bulletin 35: 797-812.
28. Mathews, S. 2010. Evolutionary studies illuminate the structural-functional model of plant phytochromes. Plant Cell 22: 4-16.
29. Mathews, S., G. M. Schneeweiss, and G. Yatskievych. 2008. Phylogenetic affinities of a new holoparasitic genus of orobanchaceae endemic to Guerrero, Mexico, inferred from molecular data. In Proceedings of Botany 2008, Botany Without Borders, Vancouver, British Columbia, Canada. Botanical Society of American, St. Louis, Missouri, USA. Available at http://2008.botanyconference.org/engine/search/index.php?func=detail&aid=858.
30. Mathews, S., C. Tsai, and E. A. Kellogg. 2000. Phylogenetic structure in the grass family (Poaceae): Evidence from the nuclear gene phytochrome B. American Journal of Botany 87: 96-107.
31. Molau, U. 1990. The genus Bartsia Scrophulariaceae-Rhinanthoideae. Opera Botanica 1990: 1-99.
32. Morawetz, J. J., C. P. Randle, and A. D. Wolfe. 2010. Phylogenetic relationships within the tropical clade of Orobanchaceae. Taxon 59: 416-426.
33. Neel, M. C., and M. P. Cummings. 2004. Section-level relationships of North American Agalinis (Orobanchaceae) based on DNA sequence analysis of three chloroplast gene regions. BMC Evolutionary Biology 4: 15.
34. Olmstead, R. G., C. W. dePamphilis, A. D. Wolfe, N. D. Young, W. J. Elisons, and P. A. Reeves. 2001. Disintegration of the Scrophulariaceae. American Journal ofBotany 88: 348-361.
35. Oxelman, B., P. Kornhall, R. G. Olmstead, and B. Bremer. 2005. Further disintegration of the Scrophulariaceae. Taxon 54: 411-425.
36. Posada, D. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14: 817-818.
37. Press, M. C. 1989. Autotrophy and heterotrophy in root hemiparasites. Trends in Ecology & Evolution 4: 258-263.
38. Press, M. C., and J. D. Graves. 1995. Parasitic plants. Chapman & Hall, London, UK.
39. Press, M. C., and G. K. Phoenix. 2005. Effects of climate change on parasitic plants: The root hemiparasitic Orobanchaceae. Folia Geobotanica 40: 205-216.
40. Press, M. C., S. Smith, and G. R. Stewart. 1991. Carbon acquisition and assimilation in parasitic plants. Functional Ecology 5: 278-283.
41. Ree, R. 2005. Phylogeny and the evolution of floral diversity in Pedicularis (orobanchaceae). International Journal of Plant Sciences 166: 595-613.
42. Scheunert, A., A. Fleischmann, C. Olano-Marín, C. BrAuchler, and G. Heubl; 2012; Phylogeny of tribe Rhinantheae (Orobanchaceae) with a focus on biogeography, cytology and re-examination of generic concepts . Taxon 61: 1269-1285.
43. Schneeweiss, G. M., A. Colwell, J. Park, C. Jang, and T. F. Steussy. 2004. Phylogeny of holoparasitic Orobanche (orobanchaceae) inferred from nuclear iTs sequences. Molecular Phylogenetics and Evolution 30: 465-478.
44. Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Systematic Biology 51: 492-508.
45. Shimodaira, H. 2008. Testing regions with nonsmooth boundaries via multiscale bootstrap. Journal of Statistical Planning and Inference 138: 1227-1241.
46. Stamatakis, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
47. Tank, D. C., and R. G. Olmstead. 2008. From annuals to perennials: Phylogeny of subtribe Castillejinae (Orobanchaceae). American Journal of Botany 95: 608-625.
48. Tank, D. C., and R. G. Olmstead. 2009. The evolutionary origin of a second radiation of annual Castilleja (Orobanchaceae) species in South America: The role of long distance dispersal and allopolyploidy. American Journal of Botany 96: 1907-1921.
49. Těšitel, J., P. Říha, S. Svobodová, T. Malinová, and M. Stech. 2010. Phylogeny, life history evolution and biogeography of the rhinanthoid Orobanchaceae. Folia Geobotanica 45: 347-367.
50. Ventenat, É. P. 1799. Orobanchoideae. Tableau du Regne Vegetal 2: 292.
51. von Wettstein, R. 1891. Scrophulariaceae. In A. Engler and K. Prantle [eds.], Die Naturlichen Pflanzenfamilien, 39-107. Engelmann, Leipzig, Germany.
52. Wickett, N. J., L. A. Honaas, E. K. Wafula, M. Das, K. Huang, B. Wu, L. Landherr, M. P. Timko, J. Yoder, J. H. Westwood, and C. W. dePamphilis. 2011. Transcriptomes of the parasitic plant family orobanchaceae reveal surprising conservation of chlorophyll synthesis. CurrentBiology 21: 2098-2104.
53. Wolfe, A. D. 2005. ISSR techniques for evolutionary biology. In E. A. Zimmer and E. H. Roalson [eds.], Molecular evolution: Producing the biochemical data, part B, 134-144. Elsevier Academic Press, San Diego, California, USA.
54. Wolfe, A. D., and C. W. dePamphilis. 1998. The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants. Molecular Biology and Evolution 15: 1243-1258.
55. Wolfe, A. D., C. P. Randle, L. Liu, and K. E. Steiner. 2005. Phylogeny and biogeography of Orobanchaceae. Folia Geobotanica 40: 115-134.
56. Wu, M., T. Huang, and S. Huang. 2009. Phylogenetic biogeography of Euphrasia section Malesianae (Orobanchaceae) in Taiwan and Malesia. Blumea-Biodiversity, Evolution and Biogeography of Plants 54: 242-247.
57. Xia, Z., W. Yin-Zheng, and J. F. Smith. 2009. Familial placement and relations of Rehmannia and Triaenophora (Scrophulariaceae s.l.) inferred from five gene regions. American Journal of Botany 96: 519-530.
58. Yoder, J. I., and J. D. Scholes. 2010. Host plant resistance to parasitic weeds recent progress and bottlenecks. Current Opinion in Plant Biology 13: 478-484.
59. Young, N. D., K. E. Steiner, and C. W. dePamphilis. 1999. The evolution of parasitism in scrophulariaceae/orobanchaceae: Plastid gene sequences refute an evolutionary transition series. Annals of the Missouri Botanical Garden 86: 876-893.
60. Zimmer, E. A., and J. WEN; 2012; Using nuclear gene data for plant phylogenetics: Progress and prospects. Molecular Phylogenetics and Evolution 65: 774-785.