Multiple global radiations in tadpole shrimps challenge the concept of 'living fossils'

PeerJ

Volumn 2013, Issue 1, 2013, Pages

  Mathers, Thomas C ^a   Hammond, Robert L ^b   Jenner, Ronald A ^c   Hänfling, Bernd ^a   Gómez, Africa ^a  

^a UNIVERSITY OF HULL   (United Kingdom)

^b UNIVERSITY OF LEICESTER   (United Kingdom)

^c DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

'Living fossil'; Bayesian analysis; Biogeography; Divergence time; Diversification; Fossil; Lepidurus; Notostraca; Triops

Indexed keywords

CYTOCHROME C OXIDASE;

ARTICLE; EVOLUTION; FOSSIL ANIMAL; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PHYLOGENY; RADIATION; SHRIMP; SPECIES DIFFERENTIATION;

EID: 84877130233     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.62     Document Type: Article

References (56)

1. Avise JC, Nelson WS, Sugita H. 1994. A speciational history of living fossils: molecular evolutionary patterns in horseshoe crabs. Evolution 48:1986-2001 DOI 10.2307/2410522.
2. Barnard KH. 1929. A revision of the South African Branchiopoda Phyllopoda. Annals of the South African Museum 29:181-272.
3. Burbrink FT, Pyron RA. 2010. How does ecological opportunity influence rates of speciation, extinction, and morphological fiversification in New World ratsnakes (tribe Lampropeltini)? Evolution 64:934-943 DOI 10.1111/j.1558-5646.2009.00888.x.
4. Casane D, Laurenti P. 2013. Why coelacanths are not 'living fossils'. BioEssays 35(4):332-338 DOI 10.1002/bies.201200145.
5. Darwin C. 1859. On the origin of species by means of natural selection. London: Murray.
6. Drummond AJ, Ho SYW, Phillips MJ, Rambaut A. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biology 4:e88 DOI 10.1371/journal.pbio.0040088.
7. Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29:1969-1973 DOI 10.1093/molbev/mss075.
8. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792-1797 DOI 10.1093/nar/gkh340.
9. Eldredge N, Gould SJ. 1972. Punctuated equilibria: an alternative to phyletic gradualism. Models in Paleobiology 82-115.
10. Fayers SR, Trewin NH. 2002. A new crustacean from the Early Devonian Rhynie chert, Aberdeenshire, Scotland. Earth and Environmental Science Transactions of the Royal Society of Edinburgh 93:355-382 DOI 10.1017/S026359330000047X.
11. Fedonkin MA, Simonetta A, Ivantsov AY. 2007. New data on Kimberella, the Vendian mollusc-like organism (White Sea region, Russia): palaeoecological and evolutionary implications. London: Geological Society 286:157-179. Special Publications.
12. Fryer G. 1988. Studies on the functional-morphology and biology of the Notostraca (Crustacea, Branchiopoda). Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 321:27-142 DOI 10.1098/rstb.1988.0091.
13. Gall J-C, Grauvogel-Stamm L. 2005. The early middle Triassic 'Grès à Voltzia'NelsonWS; formation of eastern France: a model of environmental refugium. Comptes Rendus Palevol 4:637-652 DOI 10.1016/j.crpv.2005.04.007.
14. Gand G, Garric J, Lapeyrie J. 1997. Biocénoses à triopsidés (Crustacea, Branchiopoda) du Permien du bassin de Lodève (France). Geobios 30:673-700 DOI 10.1016/S0016-6995(97)80157-X.
15. Garrouste R, Nel A, Gand G. 2009. New fossil arthropods (Notostraca and Insecta: Syntonopterida) in the continental Middle Permian of Provence (Bas-Argens Basin, France). Comptes Rendus Palevol 8:49-57 DOI 10.1016/j.crpv.2008.11.008.
16. Gore PJW. 1986. Triassic notostracans in the Newark supergroup, Culpeper Basin, Northern Virginia. Journal of Paleontology 60:1086-1096.
17. Green AJ, Sánchez MI, Amat F, Figuerola J, Hontoria F, Ruiz O, Hortas F. 2005. Dispersal of invasive and native brine shrimps Artemia (Anostraca) via waterbirds. Limnology and Oceanography 50:737-742 DOI 10.4319/lo.2005.50.2.0737.
18. Harvey THP, Vélez MI, Butterfield NJ. 2012. Exceptionally preserved crustaceans from western Canada reveal a cryptic Cambrian radiation. Proceedings of the National Academy of Sciences 109:1589-1594 DOI 10.1073/pnas.1115244109.
19. Haughton S. 1924. The fauna and stratigraphy of the Stormberg series. Annals of the South African Museum 12:323-497.
20. Hegna TA, Dong REN. 2010. Two new Notostracans, Chenops gen. nov. and Jeholops gen. nov.(Crustacea: Branchiopoda:? Notostraca) from the Yixian Formation, northeastern China. Acta Geologica Sinica 84:886-894 (English Edition) DOI 10.1111/j.1755-6724.2010.00232.x.
21. Ho SYW, Phillips MJ. 2009. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Systematic Biology 58:367-380 DOI 10.1093/sysbio/syp035.
22. Kano Y, Kimura S, Kimura T,Warén A. 2012. Living Monoplacophora: morphological conservatism or recent diversification? Zoologica Scripta 41:471-488 DOI 10.1111/j.1463-6409.2012.00550.x.
23. King JL, Hanner R. 1998. Cryptic species in a living fossil lineage: taxonomic and phylogenetic relationships within the genus Lepidurus (Crustacea: Notostraca) in North America. Molecular Phylogenetics and Evolution 10:23-36 DOI 10.1006/mpev.1997.0470.
24. Korn M, Green AJ,Machado M, Garcia-de-Lomas J, Cristo M, da Fonseca LC, Frisch D, Perez-Bote JL, Hundsdoerfer AK. 2010. Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca). Organisms Diversity and Evolution 10:409-440 DOI 10.1007/s13127-010-0026-y.
25. Korn M, Hundsdoerfer AK. 2006. Evidence for cryptic species in the tadpole shrimp Triops granarius (Lucas, 1864) (Crustacea: Notostraca). Zootaxa 1257:57-68.
26. Kotov AA, Taylor DJ. 2011. Mesozoic fossils (>145 Mya) suggest the antiquity of the subgenera of Daphnia and their coevolution with chaoborid predators. BMC Evolutionary Biology 11:129 DOI 10.1186/1471-2148-11-129.
27. Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29:1695-1701 DOI 10.1093/molbev/mss020.
28. Macdonald KS, Sallenave R, Cowley DE. 2011. Morphological and genetic variation in Triops (Branchiopoda: Notostraca) from ephemeral waters of the northern Chihuahuan desert of North America. Journal of Crustacean Biology 31:468-484 DOI 10.1651/10-3411.1.
29. Mantovani B, Cesari M, Luchetti A, Scanabissi F. 2008. Mitochondrial and nuclear DNA variability in the living fossil Triops cancriformis (Bosc, 1801) (Crustacea, Branchiopoda, Notostraca). Heredity 100:496-505 DOI 10.1038/hdy.2008.3.
30. Mathers TC, Hammond RL, Jenner RA, Zierold T, Hänfling B, Gómez A. 2013. High lability of sexual system over 250 million years of evolution in morphologically conservative tadpole shrimps. BMC Evolutionary Biology 13:30 DOI 10.1186/1471-2148-13-30.
31. Nagalingum NS,Marshall CR, Quental TB, Rai HS, Little DP,Mathews S. 2011. Recent synchronous radiation of a living fossil. Science 334:796-799 DOI 10.1126/science.1209926.
32. Obst M, Faurby S, Bussarawit S, Funch P. 2012. Molecular phylogeny of extant horseshoe crabs (Xiphosura, Limulidae) indicates Paleogene diversification of Asian species. Molecular Phylogenetics and Evolution 62:21-26 DOI 10.1016/j.ympev.2011.08.025.
33. Olesen J. 2009. Phylogeny of Branchiopoda (Crustacea)-character evolution and contribution of uniquely preserved fossils. Arthropod Systematics and Phylogeny 67:3-39.
34. Pacheco MA, Battistuzzi FU, Lentino M, Aguilar R, Kumar S, Escalante AA. 2011. Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. Molecular Biology and Evolution 28:1927-1942 DOI 10.1093/molbev/msr014.
35. Phillimore AB, Price TD. 2008. Density-dependent cladogenesis in birds. PLoS Biology 6:e71 DOI 10.1371/journal.pbio.0060071.
36. Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, Hazell S, Kamoun S, Sumlin WD, Vogler AP. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55:595-609 DOI 10.1080/10635150600852011.
37. Rabosky DL. 2006. LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies. Evolutionary Bioinformatics Online 2: 273-276.
38. Rambaut A, Drummond A. 2007. Tracer v1.4 [updated to v1.5] Available at http://beast.bio.ed.ed.ac.uk/Tracer.
39. Regier JC, Shultz JW, Zwick A, Hussey A, Ball B,Wetzer R,Martin JW, Cunningham CW. 2010. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature 463:1079-1083 DOI 10.1038/nature08742.
40. Reznick DN, Ricklefs RE. 2009. Darwin's bridge between microevolution and macroevolution. Nature 457:837-842 DOI 10.1038/nature07894.
41. Rhodes FHT. 1983. Gradualism, punctuated equilibrium and the origin of species. Nature 305:269-272 DOI 10.1038/305269a0.
42. Rogers DC. 2001. Revision of the nearctic Lepidurus (Notostraca). Journal of Crustacean Biology 21:991-1006 DOI 10.1651/0278-0372(2001)021[0991:ROTNLN]2.0.CO;2.
43. Ronquist F, Teslenko M, van derMark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61:539-542 DOI 10.1093/sysbio/sys029.
44. Scotese CR. 2001. Atlas of earth history: University of Texas at Arlington. Department of Geology. PALEOMAP Project.
45. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690 DOI 10.1093/bioinformatics/btl446.
46. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28:2731-2739 DOI 10.1093/molbev/msr121.
47. Trusheim F. 1938. Triopsiden (Crust. Phyll.) aus dem Keuper Frankens. Paläontologische Zeitschrift 19:198-216.
48. van Leeuwen CHA, van der Velde G, van Groenendael JM, Klaassen M. 2012. Gut travellers: internal dispersal of aquatic organisms by waterfowl. Journal of Biogeography 39:2031-2040 DOI 10.1111/jbi.12004.
49. Vanschoenwinkel B, Pinceel T, Vanhove MPM, Denis C, Jocque M, Timms BV, Brendonck L. 2012. Toward a global phylogeny of the living fossil crustacean order of the Notostraca. PLoS ONE 7:e34998 DOI 10.1371/journal.pone.0034998.
50. von Reumont BM, Jenner RA,Wills MA, Dell'Ampio E, Pass G, Ebersberger I,Meyer B, Koenemann S, Iliffe TM, Stamatakis A, Niehuis O,Meusemann K,Misof B. 2012.Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda. Molecular Biology and Evolution 29:1031-1045 DOI 10.1093/molbev/msr270.
51. Waloßek D. 1995. The Upper Cambrian Rehbachiella, its larval development, morphology and significance for the phylogeny of Branchiopoda and Crustacea. Hydrobiologia 298:1-13 DOI 10.1007/BF00033797.
52. Weeks SC. 2012. The role of androdioecy and gynodioecy in mediating evolutionary transitions between dioecy and hermaphroditism in the Animalia. Evolution 66:3670-3686 DOI 10.1111/j.1558-5646.2012.01714.x.
53. Womack T, Slater BJ, Stevens LG, Anderson LI, Hilton J. 2012. First cladoceran fossils from the Carboniferous: palaeoenvironmental and evolutionary implications. Palaeogeography, Palaeoclimatology, Palaeoecology 344-345:39-48 DOI 10.1016/j.palaeo.2012.05.012.
54. Wray CG, Landman NH, Saunders WB, Bonacum J. 1995. Genetic divergence and geographic diversification in Nautilus. Paleobiology 21:220-228.
55. Zierold T, Hanfling B, Gómez A. 2007. Recent evolution of alternative reproductive modes in the 'living fossil' Triops cancriformis. BMC Evolutionary Biology 7:161 DOI 10.1186/1471-2148-7-161.
56. Zierold T, Montero-Pau J, Hänfling B, Gómez A. 2009. Sex ratio, reproductive mode and genetic diversity in Triops cancriformis. Freshwater Biology 54:1392-1405 DOI 10.1111/j.1365-2427.2009.02191.x.