메뉴 건너뛰기




Volumn 319, Issue 9, 2013, Pages 1240-1246

Predicting the future: Towards symbiotic computational and experimental angiogenesis research

Author keywords

Angiogenesis; Computational modelling; Interdisciplinary; Prediction; Simulation

Indexed keywords

ANGIOGENESIS; BIOLOGICAL MODEL; EDUCATION; EXPERIMENTAL DESIGN; FEEDBACK SYSTEM; INTERPERSONAL COMMUNICATION; PRACTICE GUIDELINE; PRIORITY JOURNAL; REVIEW; SYMBIOSIS;

EID: 84877123237     PISSN: 00144827     EISSN: 10902422     Source Type: Journal    
DOI: 10.1016/j.yexcr.2013.02.001     Document Type: Review
Times cited : (28)

References (54)
  • 1
    • 80052933197 scopus 로고    scopus 로고
    • Basic and therapeutic aspects of angiogenesis
    • Potente M., Gerhardt H., Carmeliet P. Basic and therapeutic aspects of angiogenesis. Cell 2011, 146:873-887.
    • (2011) Cell , vol.146 , pp. 873-887
    • Potente, M.1    Gerhardt, H.2    Carmeliet, P.3
  • 2
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: a brief overview
    • Kitano H. Systems biology: a brief overview. Science 2002, 295:1662-1664.
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 3
    • 77649126707 scopus 로고    scopus 로고
    • Dissecting cancer through mathematics: from the cell to the animal model
    • Byrne H.M. Dissecting cancer through mathematics: from the cell to the animal model. Nat. Rev. Cancer 2010, 10:221-230.
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 221-230
    • Byrne, H.M.1
  • 4
    • 34247236577 scopus 로고    scopus 로고
    • Biology by numbers: mathematical modelling in developmental biology
    • Tomlin C.J., Axelrod J.D. Biology by numbers: mathematical modelling in developmental biology. Nat. Rev. Genet. 2007, 8:331-340.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 331-340
    • Tomlin, C.J.1    Axelrod, J.D.2
  • 5
    • 54249105943 scopus 로고    scopus 로고
    • From signals to patterns: space, time, and mathematics in developmental biology
    • Lewis J. From signals to patterns: space, time, and mathematics in developmental biology. Science 2008, 322:399-403.
    • (2008) Science , vol.322 , pp. 399-403
    • Lewis, J.1
  • 7
    • 57149107582 scopus 로고    scopus 로고
    • Computational and mathematical modeling of angiogenesis
    • Peirce S.M. Computational and mathematical modeling of angiogenesis. Microcirculation 2008, 15:739-751.
    • (2008) Microcirculation , vol.15 , pp. 739-751
    • Peirce, S.M.1
  • 9
    • 84859854387 scopus 로고    scopus 로고
    • Integration of experimental and computational approaches to sprouting angiogenesis
    • Peirce S.M., Mac Gabhann F., Bautch V.L. Integration of experimental and computational approaches to sprouting angiogenesis. Curr. Opin. Hematol. 2012, 19:184-191.
    • (2012) Curr. Opin. Hematol. , vol.19 , pp. 184-191
    • Peirce, S.M.1    Mac Gabhann, F.2    Bautch, V.L.3
  • 11
    • 33746260079 scopus 로고    scopus 로고
    • Vascular network remodeling via vessel cooption, regression and growth in tumors
    • Bartha K., Rieger H. Vascular network remodeling via vessel cooption, regression and growth in tumors. J. Theor. Biol. 2006, 241:903-918.
    • (2006) J. Theor. Biol. , vol.241 , pp. 903-918
    • Bartha, K.1    Rieger, H.2
  • 12
    • 77957176863 scopus 로고
    • A model mechanism for the chemotactic response of endothelial cells to tumour angiogenesis factor
    • Chaplain M.A., Stuart A.M. A model mechanism for the chemotactic response of endothelial cells to tumour angiogenesis factor. IMA J. Math. Appl. Med. Biol. 1993, 10:149-168.
    • (1993) IMA J. Math. Appl. Med. Biol. , vol.10 , pp. 149-168
    • Chaplain, M.A.1    Stuart, A.M.2
  • 13
    • 35649006861 scopus 로고    scopus 로고
    • Modelling the role of angiogenesis and vasculogenesis in solid tumour growth
    • Stamper I.J., Byrne H.M., Owen M.R., Maini P.K. Modelling the role of angiogenesis and vasculogenesis in solid tumour growth. Bull. Math. Biol. 2007, 69:2737-2772.
    • (2007) Bull. Math. Biol. , vol.69 , pp. 2737-2772
    • Stamper, I.J.1    Byrne, H.M.2    Owen, M.R.3    Maini, P.K.4
  • 14
    • 80053157310 scopus 로고    scopus 로고
    • An agent-based model for the investigation of neovascularization within porous scaffolds
    • Artel A., Mehdizadeh H., Chiu Y.C., Brey E.M., Cinar A. An agent-based model for the investigation of neovascularization within porous scaffolds. Tissue Eng. A 2011, 17:2133-2141.
    • (2011) Tissue Eng. A , vol.17 , pp. 2133-2141
    • Artel, A.1    Mehdizadeh, H.2    Chiu, Y.C.3    Brey, E.M.4    Cinar, A.5
  • 15
    • 68249103288 scopus 로고    scopus 로고
    • Topography of extracellular matrix mediates vascular morphogenesis and migration speeds in angiogenesis
    • Bauer A.L., Jackson T.L., Jiang Y. Topography of extracellular matrix mediates vascular morphogenesis and migration speeds in angiogenesis. PLoS Comput. Biol. 2009, 5:e1000445.
    • (2009) PLoS Comput. Biol. , vol.5
    • Bauer, A.L.1    Jackson, T.L.2    Jiang, Y.3
  • 16
    • 84868143949 scopus 로고    scopus 로고
    • MOSAIC: a multiscale model of osteogenesis and sprouting angiogenesis with lateral inhibition of endothelial cells
    • Carlier A., Geris L., Bentley K., Carmeliet G., Carmeliet P., Van Oosterwyck H. MOSAIC: a multiscale model of osteogenesis and sprouting angiogenesis with lateral inhibition of endothelial cells. PLoS Comput. Biol. 2012, 8:e1002724.
    • (2012) PLoS Comput. Biol. , vol.8
    • Carlier, A.1    Geris, L.2    Bentley, K.3    Carmeliet, G.4    Carmeliet, P.5    Van Oosterwyck, H.6
  • 19
    • 78650005650 scopus 로고    scopus 로고
    • Physical determinants of vascular network remodeling during tumor growth
    • Welter M., Rieger H. Physical determinants of vascular network remodeling during tumor growth. Eur. Phys. J. E Soft Matter 2010, 33:149-163.
    • (2010) Eur. Phys. J. E Soft Matter , vol.33 , pp. 149-163
    • Welter, M.1    Rieger, H.2
  • 20
    • 84862768329 scopus 로고    scopus 로고
    • Predicting the effects of anti-angiogenic agents targeting specific VEGF isoforms
    • Finley S.D., Popel A.S. Predicting the effects of anti-angiogenic agents targeting specific VEGF isoforms. AAPS J. 2012, 14:500-509.
    • (2012) AAPS J. , vol.14 , pp. 500-509
    • Finley, S.D.1    Popel, A.S.2
  • 21
    • 84859858720 scopus 로고    scopus 로고
    • Computational modeling of interacting VEGF and soluble VEGF receptor concentration gradients
    • Hashambhoy Y.L., Chappell J.C., Peirce S.M., Bautch V.L., Mac Gabhann F. Computational modeling of interacting VEGF and soluble VEGF receptor concentration gradients. Front. Phys. 2011, 2:62.
    • (2011) Front. Phys. , vol.2 , pp. 62
    • Hashambhoy, Y.L.1    Chappell, J.C.2    Peirce, S.M.3    Bautch, V.L.4    Mac Gabhann, F.5
  • 23
    • 84866463851 scopus 로고    scopus 로고
    • A hybrid discrete-continuum mathematical model of pattern prediction in the developing retinal vasculature
    • McDougall S.R., Watson M.G., Devlin A.H., Mitchell C.A., Chaplain M.A. A hybrid discrete-continuum mathematical model of pattern prediction in the developing retinal vasculature. Bull. Math. Biol. 2012, 74:2272-2314.
    • (2012) Bull. Math. Biol. , vol.74 , pp. 2272-2314
    • McDougall, S.R.1    Watson, M.G.2    Devlin, A.H.3    Mitchell, C.A.4    Chaplain, M.A.5
  • 24
    • 65449162276 scopus 로고    scopus 로고
    • Elongation, proliferation and migration differentiate endothelial cell phenotypes and determine capillary sprouting
    • Qutub A.A., Popel A.S. Elongation, proliferation and migration differentiate endothelial cell phenotypes and determine capillary sprouting. BMC Syst. Biol. 2009, 3:13.
    • (2009) BMC Syst. Biol. , vol.3 , pp. 13
    • Qutub, A.A.1    Popel, A.S.2
  • 25
    • 78751551571 scopus 로고    scopus 로고
    • A steering model of endothelial sheet migration recapitulates monolayer integrity and directed collective migration
    • Vitorino P., Hammer M., Kim J., Meyer T. A steering model of endothelial sheet migration recapitulates monolayer integrity and directed collective migration. Mol. Cell. Biol. 2011, 31:342-350.
    • (2011) Mol. Cell. Biol. , vol.31 , pp. 342-350
    • Vitorino, P.1    Hammer, M.2    Kim, J.3    Meyer, T.4
  • 26
    • 33846025118 scopus 로고    scopus 로고
    • Targeting neuropilin-1 to inhibit VEGF signaling in cancer: comparison of therapeutic approaches
    • Mac Gabhann F., Popel A.S. Targeting neuropilin-1 to inhibit VEGF signaling in cancer: comparison of therapeutic approaches. PLoS Comput. Biol. 2006, 2:e180.
    • (2006) PLoS Comput. Biol. , vol.2
    • Mac Gabhann, F.1    Popel, A.S.2
  • 27
    • 33846327237 scopus 로고    scopus 로고
    • Interactions of VEGF isoforms with VEGFR-1, VEGFR-2, and neuropilin in vivo: a computational model of human skeletal muscle
    • Mac Gabhann F., Popel A.S. Interactions of VEGF isoforms with VEGFR-1, VEGFR-2, and neuropilin in vivo: a computational model of human skeletal muscle. Am. J. Physiol. Heart Circ. Physiol. 2007, 292:H459-474.
    • (2007) Am. J. Physiol. Heart Circ. Physiol. , vol.292
    • Mac Gabhann, F.1    Popel, A.S.2
  • 28
    • 53549094683 scopus 로고    scopus 로고
    • A compartment model of VEGF distribution in blood, healthy and diseased tissues
    • Stefanini M.O., Wu F.T., Mac Gabhann F., Popel A.S. A compartment model of VEGF distribution in blood, healthy and diseased tissues. BMC Syst. Biol. 2008, 2:77.
    • (2008) BMC Syst. Biol. , vol.2 , pp. 77
    • Stefanini, M.O.1    Wu, F.T.2    Mac Gabhann, F.3    Popel, A.S.4
  • 29
    • 78649952814 scopus 로고    scopus 로고
    • Increase of plasma VEGF after intravenous administration of bevacizumab is predicted by a pharmacokinetic model
    • Stefanini M.O., Wu F.T., Mac Gabhann F., Popel A.S. Increase of plasma VEGF after intravenous administration of bevacizumab is predicted by a pharmacokinetic model. Cancer Res. 2010, 70:9886-9894.
    • (2010) Cancer Res. , vol.70 , pp. 9886-9894
    • Stefanini, M.O.1    Wu, F.T.2    Mac Gabhann, F.3    Popel, A.S.4
  • 31
    • 36348997609 scopus 로고    scopus 로고
    • Agent-based simulation of notch-mediated tip cell selection in angiogenic sprout initialisation
    • Bentley K., Gerhardt H., Bates P.A. Agent-based simulation of notch-mediated tip cell selection in angiogenic sprout initialisation. J. Theor. Biol. 2008, 250:25-36.
    • (2008) J. Theor. Biol. , vol.250 , pp. 25-36
    • Bentley, K.1    Gerhardt, H.2    Bates, P.A.3
  • 32
    • 73549120589 scopus 로고    scopus 로고
    • Tipping the balance: robustness of tip cell selection, migration and fusion in angiogenesis
    • Bentley K., Mariggi G., Gerhardt H., Bates P.A. Tipping the balance: robustness of tip cell selection, migration and fusion in angiogenesis. PLoS Comput. Biol. 2009, 5:e1000549.
    • (2009) PLoS Comput. Biol. , vol.5
    • Bentley, K.1    Mariggi, G.2    Gerhardt, H.3    Bates, P.A.4
  • 34
    • 84877136294 scopus 로고    scopus 로고
    • A truncation allele in vascular endothelial growth factor C (VEGFC) reveals distinct modes of signaling during lymphatic and vascular development
    • Development, in press.
    • J.A. Villefranc, S. Nicoli, K. Bentley, M. Jeltsch, G. Zarkada, J.C. Moore, H. Gerhardt, K. Alitalo, N.D. Lawson, A truncation allele in vascular endothelial growth factor C (VEGFC) reveals distinct modes of signaling during lymphatic and vascular development, Development, in press.
    • Villefranc, J.A.1    Nicoli, S.2    Bentley, K.3    Jeltsch, M.4    Zarkada, G.5    Moore, J.C.6    Gerhardt, H.7    Alitalo, K.8    Lawson, N.D.9
  • 35
    • 70450196329 scopus 로고    scopus 로고
    • VEGFRs and Notch: a dynamic collaboration in vascular patterning
    • Jakobsson L., Bentley K., Gerhardt H. VEGFRs and Notch: a dynamic collaboration in vascular patterning. Biochem. Soc. Trans. 2009, 37:1233-1236.
    • (2009) Biochem. Soc. Trans. , vol.37 , pp. 1233-1236
    • Jakobsson, L.1    Bentley, K.2    Gerhardt, H.3
  • 36
    • 84865786005 scopus 로고    scopus 로고
    • Observation of a new boson at a mass of 125GeV with the CMS experiment at the LHC
    • Chatrchyan S.E.A., Collaboration C. Observation of a new boson at a mass of 125GeV with the CMS experiment at the LHC. Phys. Lett. B 2012, 716:30-61.
    • (2012) Phys. Lett. B , vol.716 , pp. 30-61
    • Chatrchyan, S.E.A.1    Collaboration, C.2
  • 37
    • 85038109506 scopus 로고    scopus 로고
    • Observation of a new particle in the search for the standard model Higgs boson with the ATLAS detector at the LHC
    • Aad G.E.A., Collaboration A. Observation of a new particle in the search for the standard model Higgs boson with the ATLAS detector at the LHC. Phys. Lett. B 2012, 716:1-29.
    • (2012) Phys. Lett. B , vol.716 , pp. 1-29
    • Aad, G.E.A.1    Collaboration, A.2
  • 40
    • 46249114829 scopus 로고    scopus 로고
    • Scaling of the BMP activation gradient in Xenopus embryos
    • Ben-Zvi D., Shilo B.Z., Fainsod A., Barkai N. Scaling of the BMP activation gradient in Xenopus embryos. Nature 2008, 453:1205-1211.
    • (2008) Nature , vol.453 , pp. 1205-1211
    • Ben-Zvi, D.1    Shilo, B.Z.2    Fainsod, A.3    Barkai, N.4
  • 41
    • 12744280743 scopus 로고    scopus 로고
    • An autoregulatory circuit for long-range self-organization in Dictyostelium cell populations
    • Sawai S., Thomason P.A., Cox E.C. An autoregulatory circuit for long-range self-organization in Dictyostelium cell populations. Nature 2005, 433:323-326.
    • (2005) Nature , vol.433 , pp. 323-326
    • Sawai, S.1    Thomason, P.A.2    Cox, E.C.3
  • 42
    • 84859349606 scopus 로고    scopus 로고
    • Exploiting evolution to treat drug resistance: combination therapy and the double bind
    • Basanta D., Gatenby R.A., Anderson A.R. Exploiting evolution to treat drug resistance: combination therapy and the double bind. Mol. Pharm. 2012, 9:914-921.
    • (2012) Mol. Pharm. , vol.9 , pp. 914-921
    • Basanta, D.1    Gatenby, R.A.2    Anderson, A.R.3
  • 43
    • 0029751950 scopus 로고    scopus 로고
    • A reaction-diffusion model of cancer invasion
    • Gatenby R.A., Gawlinski E.T. A reaction-diffusion model of cancer invasion. Cancer Res. 1996, 56:5745-5753.
    • (1996) Cancer Res. , vol.56 , pp. 5745-5753
    • Gatenby, R.A.1    Gawlinski, E.T.2
  • 46
    • 0037364162 scopus 로고    scopus 로고
    • ADMET in silico modelling: towards prediction paradise?
    • van de Waterbeemd H., Gifford E. ADMET in silico modelling: towards prediction paradise?. Nat. Rev. Drug Discovery 2003, 2:192-204.
    • (2003) Nat. Rev. Drug Discovery , vol.2 , pp. 192-204
    • van de Waterbeemd, H.1    Gifford, E.2
  • 47
    • 0035843902 scopus 로고    scopus 로고
    • The foot-and-mouth epidemic in Great Britain: pattern of spread and impact of interventions
    • Ferguson N.M., Donnelly C.A., Anderson R.M. The foot-and-mouth epidemic in Great Britain: pattern of spread and impact of interventions. Science 2001, 292:1155-1160.
    • (2001) Science , vol.292 , pp. 1155-1160
    • Ferguson, N.M.1    Donnelly, C.A.2    Anderson, R.M.3
  • 48
    • 79958285882 scopus 로고    scopus 로고
    • Rapid analysis of vessel elements (RAVE): a tool for studying physiologic, pathologic and tumor angiogenesis
    • Seaman M.E., Peirce S.M., Kelly K. Rapid analysis of vessel elements (RAVE): a tool for studying physiologic, pathologic and tumor angiogenesis. PLoS One 2011, 6:e20807.
    • (2011) PLoS One , vol.6
    • Seaman, M.E.1    Peirce, S.M.2    Kelly, K.3
  • 49
  • 50
    • 0035671571 scopus 로고    scopus 로고
    • Comparison of three in vitro human 'angiogenesis' assays with capillaries formed in vivo
    • Donovan D., Brown N.J., Bishop E.T., Lewis C.E. Comparison of three in vitro human 'angiogenesis' assays with capillaries formed in vivo. Angiogenesis 2001, 4:113-121.
    • (2001) Angiogenesis , vol.4 , pp. 113-121
    • Donovan, D.1    Brown, N.J.2    Bishop, E.T.3    Lewis, C.E.4
  • 51
    • 1542358728 scopus 로고    scopus 로고
    • A new image analysis method based on topological and fractal parameters to evaluate the angiostatic activity of docetaxel by using the Matrigel assay in vitro
    • Guidolin D., Vacca A., Nussdorfer G.G., Ribatti D. A new image analysis method based on topological and fractal parameters to evaluate the angiostatic activity of docetaxel by using the Matrigel assay in vitro. Microvasc. Res. 2004, 67:117-124.
    • (2004) Microvasc. Res. , vol.67 , pp. 117-124
    • Guidolin, D.1    Vacca, A.2    Nussdorfer, G.G.3    Ribatti, D.4
  • 52
    • 84865706553 scopus 로고    scopus 로고
    • Haemodynamics-driven developmental pruning of brain vasculature in zebrafish
    • Chen Q., Jiang L., Li C., Hu D., Bu J.W., Cai D., Du J.L. Haemodynamics-driven developmental pruning of brain vasculature in zebrafish. PLoS Biol. 2012, 10:e1001374.
    • (2012) PLoS Biol. , vol.10
    • Chen, Q.1    Jiang, L.2    Li, C.3    Hu, D.4    Bu, J.W.5    Cai, D.6    Du, J.L.7
  • 54
    • 77954188894 scopus 로고    scopus 로고
    • Experimentalist meets theoretician: a tale of two scientific cultures
    • Drubin D.G., Oster G. Experimentalist meets theoretician: a tale of two scientific cultures. Mol. Biol. Cell 2010, 21:2099-2101.
    • (2010) Mol. Biol. Cell , vol.21 , pp. 2099-2101
    • Drubin, D.G.1    Oster, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.