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Volumn 8, Issue 5, 2013, Pages

Ammonium Transport Proteins with Changes in One of the Conserved Pore Histidines Have Different Performance in Ammonia and Methylamine Conduction

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; AMMONIUM TRANSPORT PROTEIN; CARRIER PROTEIN; HISTIDINE; HISTIDINE 168A; HISTIDINE 318A; METHYLAMINE; UNCLASSIFIED DRUG;

EID: 84877122767     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0062745     Document Type: Article
Times cited : (19)

References (70)
  • 1
    • 0021796811 scopus 로고
    • Bacterial ammonium transport
    • Kleiner D, (1985) Bacterial ammonium transport. FEMS Microbiol Lett 32: 87-100.
    • (1985) FEMS Microbiol Lett , vol.32 , pp. 87-100
    • Kleiner, D.1
  • 2
    • 0029989297 scopus 로고    scopus 로고
    • Functional and genetic characterization of the (methyl) ammonium uptake carrier of Corynebacterium glutamicum
    • Siewe RM, Weil B, Burkovski A, Eikmanns BJ, Eikmanns M, et al. (1996) Functional and genetic characterization of the (methyl) ammonium uptake carrier of Corynebacterium glutamicum. J Biol Chem 271: 5398-5403.
    • (1996) J Biol Chem , vol.271 , pp. 5398-5403
    • Siewe, R.M.1    Weil, B.2    Burkovski, A.3    Eikmanns, B.J.4    Eikmanns, M.5
  • 3
    • 0035154822 scopus 로고    scopus 로고
    • Multiplicity of ammonium uptake systems in Corynebacterium glutamicum: role of Amt and AmtB
    • Meier-Wagner J, Nolden L, Jakoby M, Siewe R, Kramer R, et al. (2001) Multiplicity of ammonium uptake systems in Corynebacterium glutamicum: role of Amt and AmtB. Microbiology 147: 135-143.
    • (2001) Microbiology , vol.147 , pp. 135-143
    • Meier-Wagner, J.1    Nolden, L.2    Jakoby, M.3    Siewe, R.4    Kramer, R.5
  • 4
    • 0033968928 scopus 로고    scopus 로고
    • The glnKamtB operon. A conserved gene pair in prokaryotes
    • Thomas G, Coutts G, Merrick M, (2000) The glnKamtB operon. A conserved gene pair in prokaryotes. Trends Genet 16: 11-14.
    • (2000) Trends Genet , vol.16 , pp. 11-14
    • Thomas, G.1    Coutts, G.2    Merrick, M.3
  • 5
    • 0028070870 scopus 로고
    • Identification of a high affinity NH4+ transporter from plants
    • Ninnemann O, Jauniaux J, Frommer W, (1994) Identification of a high affinity NH4+ transporter from plants. EMBO J 13: 3464-3471.
    • (1994) EMBO J , vol.13 , pp. 3464-3471
    • Ninnemann, O.1    Jauniaux, J.2    Frommer, W.3
  • 7
    • 0036919072 scopus 로고    scopus 로고
    • Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane
    • Sohlenkamp C, Wood CC, Roeb GW, Udvardi MK, (2002) Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane. Plant Physiol 130: 1788-1796.
    • (2002) Plant Physiol , vol.130 , pp. 1788-1796
    • Sohlenkamp, C.1    Wood, C.C.2    Roeb, G.W.3    Udvardi, M.K.4
  • 8
  • 9
    • 0242580829 scopus 로고    scopus 로고
    • Homo- and hetero-oligomerization of ammonium transporter-1 NH4+ uniporters
    • Ludewig U, Wilken S, Wu BH, Jost W, Obrdlik P, et al. (2003) Homo- and hetero-oligomerization of ammonium transporter-1 NH4+ uniporters. J Biol Chem 278: 45603-45610.
    • (2003) J Biol Chem , vol.278 , pp. 45603-45610
    • Ludewig, U.1    Wilken, S.2    Wu, B.H.3    Jost, W.4    Obrdlik, P.5
  • 10
    • 33644508650 scopus 로고    scopus 로고
    • Rh proteins: key structural and functional components of the red cell membrane
    • Van Kim CL, Colin Y, Cartron JP, (2006) Rh proteins: key structural and functional components of the red cell membrane. Blood Rev 20: 93-110.
    • (2006) Blood Rev , vol.20 , pp. 93-110
    • Van Kim, C.L.1    Colin, Y.2    Cartron, J.P.3
  • 11
    • 33845802657 scopus 로고    scopus 로고
    • Ammonium homeostasis and human Rhesus glycoproteins
    • Planelles G, (2007) Ammonium homeostasis and human Rhesus glycoproteins. Nephron Physiol 105: p11-p17.
    • (2007) Nephron Physiol , vol.105
    • Planelles, G.1
  • 12
    • 10344262632 scopus 로고    scopus 로고
    • The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli
    • Zheng L, Kostrewa D, Berneche S, Winkler FK, Li XD, (2004) The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli. Proc Natl Acad Sci USA 101: 17090-17095.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17090-17095
    • Zheng, L.1    Kostrewa, D.2    Berneche, S.3    Winkler, F.K.4    Li, X.D.5
  • 14
    • 27244444582 scopus 로고    scopus 로고
    • Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus
    • Andrade SL, Dickmanns A, Ficner R, Einsle O, (2005) Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus. Proc Natl Acad Sci USA 102: 14994-14999.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 14994-14999
    • Andrade, S.L.1    Dickmanns, A.2    Ficner, R.3    Einsle, O.4
  • 15
    • 37649023285 scopus 로고    scopus 로고
    • The 1.3- Å resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins
    • Lupo D, Li X-D, Durand A, Tomizaki T, Cherif-Zahar B, et al. (2007) The 1.3- Å resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins. Proc Natl Acad Sci USA 104: 19303-19308.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19303-19308
    • Lupo, D.1    Li, X.-D.2    Durand, A.3    Tomizaki, T.4    Cherif-Zahar, B.5
  • 19
    • 34248546419 scopus 로고    scopus 로고
    • Structural and mechanistic aspects of Amt/Rh proteins
    • Javelle A, Lupo D, Li XD, Merrick M, Chami M, et al. (2007) Structural and mechanistic aspects of Amt/Rh proteins. J Struct Biol 158: 472-481.
    • (2007) J Struct Biol , vol.158 , pp. 472-481
    • Javelle, A.1    Lupo, D.2    Li, X.D.3    Merrick, M.4    Chami, M.5
  • 20
    • 0037133694 scopus 로고    scopus 로고
    • Ammonium/methylammonium transport (Amt) proteins facilitate diffusion of NH3 bidirectionally
    • Soupene E, Lee H, Kustu S, (2002) Ammonium/methylammonium transport (Amt) proteins facilitate diffusion of NH3 bidirectionally. Proc Natl Acad Sci USA 99: 3926-3931.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 3926-3931
    • Soupene, E.1    Lee, H.2    Kustu, S.3
  • 21
    • 0036267364 scopus 로고    scopus 로고
    • Gas channels for NH(3): proteins from hyperthermophiles complement an Escherichia coli mutant
    • Soupene E, Chu T, Corbin RW, Hunt DF, Kustu S, (2002) Gas channels for NH(3): proteins from hyperthermophiles complement an Escherichia coli mutant. J Bacteriol 184: 3396-3400.
    • (2002) J Bacteriol , vol.184 , pp. 3396-3400
    • Soupene, E.1    Chu, T.2    Corbin, R.W.3    Hunt, D.F.4    Kustu, S.5
  • 22
    • 23944497571 scopus 로고    scopus 로고
    • In vivo functional characterization of the Escherichia coli ammonium channel AmtB: evidence for metabolic coupling of AmtB to glutamine synthetase
    • Javelle A, Thomas G, Marini AM, Kramer R, Merrick M, (2005) In vivo functional characterization of the Escherichia coli ammonium channel AmtB: evidence for metabolic coupling of AmtB to glutamine synthetase. Biochem J 390: 215-222.
    • (2005) Biochem J , vol.390 , pp. 215-222
    • Javelle, A.1    Thomas, G.2    Marini, A.M.3    Kramer, R.4    Merrick, M.5
  • 23
    • 42449099887 scopus 로고    scopus 로고
    • Substrate binding, deprotonation, and selectivity at the periplasmic entrance of the Escherichia coli ammonia channel AmtB
    • Javelle A, Lupo D, Ripoche P, Fulford T, Merrick M, et al. (2008) Substrate binding, deprotonation, and selectivity at the periplasmic entrance of the Escherichia coli ammonia channel AmtB. Proc Natl Acad Sci USA 105: 5040-5045.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 5040-5045
    • Javelle, A.1    Lupo, D.2    Ripoche, P.3    Fulford, T.4    Merrick, M.5
  • 24
    • 0032499682 scopus 로고    scopus 로고
    • Ammonia acquisition in enteric bacteria: physiological role of the ammonium/methylammonium transport B (AmtB) protein
    • Soupene E, He L, Yan D, Kustu S, (1998) Ammonia acquisition in enteric bacteria: physiological role of the ammonium/methylammonium transport B (AmtB) protein. Proc Natl Acad Sci USA 95: 7030-7034.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 7030-7034
    • Soupene, E.1    He, L.2    Yan, D.3    Kustu, S.4
  • 25
    • 34247648064 scopus 로고    scopus 로고
    • A stable water chain in the hydrophobic pore of the AmtB ammonium transporter
    • Lamoureux G, Klein ML, Berneche S, (2007) A stable water chain in the hydrophobic pore of the AmtB ammonium transporter. Biophys J 92: L82-84.
    • (2007) Biophys J , vol.92
    • Lamoureux, G.1    Klein, M.L.2    Berneche, S.3
  • 26
    • 33646029103 scopus 로고    scopus 로고
    • Ion transport versus gas conduction: function of AMT/Rh-type proteins
    • Ludewig U, (2006) Ion transport versus gas conduction: function of AMT/Rh-type proteins. Transfu Clin Biol 13: 111-116.
    • (2006) Transfu Clin Biol , vol.13 , pp. 111-116
    • Ludewig, U.1
  • 27
    • 84863448946 scopus 로고    scopus 로고
    • Ammonium transporters achieve charge transfer by fragmenting their substrate
    • Wang S, Orabi EA, Baday S, Berneche S, Lamoureux G, (2012) Ammonium transporters achieve charge transfer by fragmenting their substrate. J Am Chem Soc 134: 10419-10427.
    • (2012) J Am Chem Soc , vol.134 , pp. 10419-10427
    • Wang, S.1    Orabi, E.A.2    Baday, S.3    Berneche, S.4    Lamoureux, G.5
  • 28
    • 36749060099 scopus 로고    scopus 로고
    • The W148L substitution in the Escherichia coli ammonium channel AmtB increases flux and indicates that the substrate is an ion
    • Fong RN, Kim KS, Yoshihara C, Inwood WB, Kustu S, (2007) The W148L substitution in the Escherichia coli ammonium channel AmtB increases flux and indicates that the substrate is an ion. Proc Natl Acad Sci USA 104: 18706-18711.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 18706-18711
    • Fong, R.N.1    Kim, K.S.2    Yoshihara, C.3    Inwood, W.B.4    Kustu, S.5
  • 29
  • 30
    • 33746536161 scopus 로고    scopus 로고
    • Role of AMT1; 1 in NH4+ acquisition in Arabidopsis thaliana
    • Mayer M, Ludewig U, (2006) Role of AMT1; 1 in NH4+ acquisition in Arabidopsis thaliana. Plant Biol 8: 522-528.
    • (2006) Plant Biol , vol.8 , pp. 522-528
    • Mayer, M.1    Ludewig, U.2
  • 31
    • 31744432898 scopus 로고    scopus 로고
    • Different transport mechanisms in plant and human AMT/Rh-type ammonium transporters
    • Mayer M, Schaaf G, Mouro I, Lopez C, Colin Y, et al. (2006) Different transport mechanisms in plant and human AMT/Rh-type ammonium transporters. J Gen Physiol 127: 133-144.
    • (2006) J Gen Physiol , vol.127 , pp. 133-144
    • Mayer, M.1    Schaaf, G.2    Mouro, I.3    Lopez, C.4    Colin, Y.5
  • 32
    • 79952762852 scopus 로고    scopus 로고
    • Periplasmic vestibule plays an important role for solute recruitment, selectivity, and gating in the Rh/Amt/MEP superfamily
    • Akgun U, Khademi S, (2011) Periplasmic vestibule plays an important role for solute recruitment, selectivity, and gating in the Rh/Amt/MEP superfamily. Proc Natl Acad Sci USA 108: 3970-3975.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 3970-3975
    • Akgun, U.1    Khademi, S.2
  • 33
    • 78649619396 scopus 로고    scopus 로고
    • Molecular Dynamics Simulations on the Mechanism of Transporting Methylamine and Ammonia by Ammonium Transporter AmtB
    • Wang J, Yang H, Zuo Z, Yan X, Wang Y, et al. (2010) Molecular Dynamics Simulations on the Mechanism of Transporting Methylamine and Ammonia by Ammonium Transporter AmtB. J Phys Chem B 114: 15172-15179.
    • (2010) J Phys Chem B , vol.114 , pp. 15172-15179
    • Wang, J.1    Yang, H.2    Zuo, Z.3    Yan, X.4    Wang, Y.5
  • 34
    • 77956536454 scopus 로고    scopus 로고
    • Substrate Recognition in the Escherichia coli Ammonia Channel AmtB: A QM/MM Investigation
    • Nygaard TP, Alfonso-Prieto M, Peters GH, Jensen MO, Rovira C, (2010) Substrate Recognition in the Escherichia coli Ammonia Channel AmtB: A QM/MM Investigation. J Phys Chem B 114: 11859-11865.
    • (2010) J Phys Chem B , vol.114 , pp. 11859-11865
    • Nygaard, T.P.1    Alfonso-Prieto, M.2    Peters, G.H.3    Jensen, M.O.4    Rovira, C.5
  • 35
    • 65249185794 scopus 로고    scopus 로고
    • Functional role of Asp160 and the deprotonation mechanism of ammonium in the Escherichia coli ammonia channel protein AmtB
    • Lin Y, Cao Z, Mo Y, (2009) Functional role of Asp160 and the deprotonation mechanism of ammonium in the Escherichia coli ammonia channel protein AmtB. J Phys Chem B 113: 4922-4929.
    • (2009) J Phys Chem B , vol.113 , pp. 4922-4929
    • Lin, Y.1    Cao, Z.2    Mo, Y.3
  • 36
    • 33846842303 scopus 로고    scopus 로고
    • Detailed mechanism for AmtB conducting NH4+/NH3: molecular dynamics simulations
    • Yang H, Xu Y, Zhu W, Chen K, Jiang H, (2007) Detailed mechanism for AmtB conducting NH4+/NH3: molecular dynamics simulations. Biophys J 92: 877-885.
    • (2007) Biophys J , vol.92 , pp. 877-885
    • Yang, H.1    Xu, Y.2    Zhu, W.3    Chen, K.4    Jiang, H.5
  • 37
    • 33846796146 scopus 로고    scopus 로고
    • Protonation states of ammonia/ammonium in the hydrophobic pore of ammonia transporter protein AmtB
    • Ishikita H, Knapp EW, (2007) Protonation states of ammonia/ammonium in the hydrophobic pore of ammonia transporter protein AmtB. J Am Chem Soc 129: 1210-1215.
    • (2007) J Am Chem Soc , vol.129 , pp. 1210-1215
    • Ishikita, H.1    Knapp, E.W.2
  • 38
    • 34548726314 scopus 로고    scopus 로고
    • Deprotonation mechanism of NH4+ in the Escherichia coli ammonium transporter AmtB: insight from QM and QM/MM calculations
    • Cao Z, Mo Y, Thiel W, (2007) Deprotonation mechanism of NH4+ in the Escherichia coli ammonium transporter AmtB: insight from QM and QM/MM calculations. Angew Chem Int Ed Engl 46: 6811-6815.
    • (2007) Angew Chem Int Ed Engl , vol.46 , pp. 6811-6815
    • Cao, Z.1    Mo, Y.2    Thiel, W.3
  • 39
    • 33847311716 scopus 로고    scopus 로고
    • Deprotonation by dehydration: the origin of ammonium sensing in the AmtB channel
    • Bostick DL, Brooks CL, 3rd (2007) Deprotonation by dehydration: the origin of ammonium sensing in the AmtB channel. PLoS Comput Biol 3: e22.
    • (2007) PLoS Comput Biol , vol.3
    • Bostick, D.L.1    Brooks 3rd, C.L.2
  • 40
    • 34250313708 scopus 로고    scopus 로고
    • On the equivalence point for ammonium (de)protonation during its transport through the AmtB channel
    • Bostick DL, Brooks CL, 3rd (2007) On the equivalence point for ammonium (de)protonation during its transport through the AmtB channel. Biophys J 92: L103-105.
    • (2007) Biophys J , vol.92
    • Bostick, D.L.1    Brooks 3rd, C.L.2
  • 41
    • 33845461593 scopus 로고    scopus 로고
    • Ammonium recruitment and ammonia transport by E. coli ammonia channel AmtB
    • Nygaard TP, Rovira C, Peters GH, Jensen MO, (2006) Ammonium recruitment and ammonia transport by E. coli ammonia channel AmtB. Biophys J 91: 4401-4412.
    • (2006) Biophys J , vol.91 , pp. 4401-4412
    • Nygaard, T.P.1    Rovira, C.2    Peters, G.H.3    Jensen, M.O.4
  • 42
    • 32544443795 scopus 로고    scopus 로고
    • Molecular determinants for binding of ammonium ion in the ammonia transporter AmtB-A quantum chemical analysis
    • Liu Y, Hu X, (2006) Molecular determinants for binding of ammonium ion in the ammonia transporter AmtB-A quantum chemical analysis. J Phys Chem A 110: 1375-1381.
    • (2006) J Phys Chem A , vol.110 , pp. 1375-1381
    • Liu, Y.1    Hu, X.2
  • 43
    • 33748098179 scopus 로고    scopus 로고
    • Molecular dynamics simulations on the Escherichia coli ammonia channel protein AmtB: mechanism of ammonia/ammonium transport
    • Lin Y, Cao Z, Mo Y, (2006) Molecular dynamics simulations on the Escherichia coli ammonia channel protein AmtB: mechanism of ammonia/ammonium transport. J Am Chem Soc 128: 10876-10884.
    • (2006) J Am Chem Soc , vol.128 , pp. 10876-10884
    • Lin, Y.1    Cao, Z.2    Mo, Y.3
  • 44
    • 33845981511 scopus 로고    scopus 로고
    • An unusual twin-his arrangement in the pore of ammonia channels is essential for substrate conductance
    • Javelle A, Lupo D, Zheng L, Li XD, Winkler FK, et al. (2006) An unusual twin-his arrangement in the pore of ammonia channels is essential for substrate conductance. J Biol Chem 281: 39492-39498.
    • (2006) J Biol Chem , vol.281 , pp. 39492-39498
    • Javelle, A.1    Lupo, D.2    Zheng, L.3    Li, X.D.4    Winkler, F.K.5
  • 45
    • 0029154658 scopus 로고
    • Ntr1 Encodes a High-Affinity Oligopeptide Transporter in Arabidopsis
    • Rentsch D, Laloi M, Rouhara I, Schmelzer E, Delrot S, et al. (1995) Ntr1 Encodes a High-Affinity Oligopeptide Transporter in Arabidopsis. FEBS Lett 370: 264-268.
    • (1995) FEBS Lett , vol.370 , pp. 264-268
    • Rentsch, D.1    Laloi, M.2    Rouhara, I.3    Schmelzer, E.4    Delrot, S.5
  • 46
    • 1542275558 scopus 로고    scopus 로고
    • Ammonium sensing in Escherichia coli. Role of the ammonium transporter AmtB and AmtB-GlnK complex formation
    • Javelle A, Severi E, Thornton J, Merrick M, (2004) Ammonium sensing in Escherichia coli. Role of the ammonium transporter AmtB and AmtB-GlnK complex formation. J Biol Chem 279: 8530-8538.
    • (2004) J Biol Chem , vol.279 , pp. 8530-8538
    • Javelle, A.1    Severi, E.2    Thornton, J.3    Merrick, M.4
  • 47
    • 37449009084 scopus 로고    scopus 로고
    • Evolution and functional characterization of the RH50 gene from the ammonia-oxidizing bacterium Nitrosomonas europaea
    • Cherif-Zahar B, Durand A, Schmidt I, Hamdaoui N, Matic I, et al. (2007) Evolution and functional characterization of the RH50 gene from the ammonia-oxidizing bacterium Nitrosomonas europaea. J Bacteriol 189: 9090-9100.
    • (2007) J Bacteriol , vol.189 , pp. 9090-9100
    • Cherif-Zahar, B.1    Durand, A.2    Schmidt, I.3    Hamdaoui, N.4    Matic, I.5
  • 49
    • 46249092554 scopus 로고    scopus 로고
    • GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
    • Hess B, Kutzner C, Van Der Spoel D, Lindahl E, (2008) GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation. J Chem Theory Comput 4: 435-447.
    • (2008) J Chem Theory Comput , vol.4 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    van der Spoel, D.3    Lindahl, E.4
  • 50
    • 3142714765 scopus 로고    scopus 로고
    • Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
    • Mackerell AD, Feig M, Brooks CL, (2004) Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J Comput Chem 25: 1400-1415.
    • (2004) J Comput Chem , vol.25 , pp. 1400-1415
    • Mackerell, A.D.1    Feig, M.2    Brooks, C.L.3
  • 51
    • 77950106854 scopus 로고    scopus 로고
    • Implementation of the CHARMM force field in GROMACS: Analysis of protein stability effects from correction maps, virtual interaction sites, and water models
    • Bjelkmar P, Larsson P, Cuendet MA, Hess B, Lindahl E, (2010) Implementation of the CHARMM force field in GROMACS: Analysis of protein stability effects from correction maps, virtual interaction sites, and water models. J Chem Theory Comput 6: 459-466.
    • (2010) J Chem Theory Comput , vol.6 , pp. 459-466
    • Bjelkmar, P.1    Larsson, P.2    Cuendet, M.A.3    Hess, B.4    Lindahl, E.5
  • 52
    • 79958841703 scopus 로고    scopus 로고
    • SwissParam: A fast force field generation tool for small organic molecules
    • Zoete V, Cuendet MA, Grosdidier A, Michielin O, (2011) SwissParam: A fast force field generation tool for small organic molecules. J Comput Chem 32: 2359-2368.
    • (2011) J Comput Chem , vol.32 , pp. 2359-2368
    • Zoete, V.1    Cuendet, M.A.2    Grosdidier, A.3    Michielin, O.4
  • 53
    • 33645903407 scopus 로고
    • Solvation thermodynamics of nonionic solutes
    • Ben-Naim A, Marcus Y, (1984) Solvation thermodynamics of nonionic solutes. J Chem Phys 81: 2016-2027.
    • (1984) J Chem Phys , vol.81 , pp. 2016-2027
    • Ben-Naim, A.1    Marcus, Y.2
  • 55
    • 33846823909 scopus 로고
    • Particle Mesh Ewald - an N.Log(N) Method for Ewald Sums in Large Systems
    • Darden T, York D, Pedersen L, (1993) Particle Mesh Ewald- an N.Log(N) Method for Ewald Sums in Large Systems. J Chem Phys 98: 10089-10092.
    • (1993) J Chem Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 56
    • 33846086933 scopus 로고    scopus 로고
    • Canonical sampling through velocity rescaling
    • Bussi G, Donadio D, Parrinello M, (2007) Canonical sampling through velocity rescaling. J Chem Phys 126: 014101.
    • (2007) J Chem Phys , vol.126 , pp. 014101
    • Bussi, G.1    Donadio, D.2    Parrinello, M.3
  • 58
    • 0001538909 scopus 로고
    • Canonical dynamics: Equilibrium phase-space distributions
    • Hoover WG, (1985) Canonical dynamics: Equilibrium phase-space distributions. Phys Rev A 31: 1695-1697.
    • (1985) Phys Rev A , vol.31 , pp. 1695-1697
    • Hoover, W.G.1
  • 59
    • 84943502952 scopus 로고
    • A molecular dynamics method for simulations in the canonical ensemble
    • Nosé S, (1984) A molecular dynamics method for simulations in the canonical ensemble. Mol Phys 52: 255-268.
    • (1984) Mol Phys , vol.52 , pp. 255-268
    • Nosé, S.1
  • 60
    • 0019707626 scopus 로고
    • Polymorphic transitions in single crystals: A new molecular dynamics method
    • Parrinello M, Rahman A, (1981) Polymorphic transitions in single crystals: A new molecular dynamics method. J Appl Phys 52: 7182-7190.
    • (1981) J Appl Phys , vol.52 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 61
    • 77957110065 scopus 로고    scopus 로고
    • Potentials of Mean Force and Permeabilities for Carbon Dioxide, Ammonia, and Water Flux across a Rhesus Protein Channel and Lipid Membranes
    • Hub JS, Winkler FK, Merrick M, de Groot BL, (2010) Potentials of Mean Force and Permeabilities for Carbon Dioxide, Ammonia, and Water Flux across a Rhesus Protein Channel and Lipid Membranes. J Am Chem Soc 132: 13251-13263.
    • (2010) J Am Chem Soc , vol.132 , pp. 13251-13263
    • Hub, J.S.1    Winkler, F.K.2    Merrick, M.3    de Groot, B.L.4
  • 62
    • 84986519238 scopus 로고
    • The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
    • Kumar S, Rosenberg JM, Bouzida D, Swendsen RH, Kollman PA, (1992) The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method. J Comput Chem 13: 1011-1021.
    • (1992) J Comput Chem , vol.13 , pp. 1011-1021
    • Kumar, S.1    Rosenberg, J.M.2    Bouzida, D.3    Swendsen, R.H.4    Kollman, P.A.5
  • 63
    • 78651282170 scopus 로고    scopus 로고
    • g_wham-A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates
    • Hub JS, de Groot BL, van der Spoel D, (2011) g_wham-A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates. J Chem Theory Comput 6: 3713-3720.
    • (2011) J Chem Theory Comput , vol.6 , pp. 3713-3720
    • Hub, J.S.1    de Groot, B.L.2    van der Spoel, D.3
  • 64
    • 0033757434 scopus 로고    scopus 로고
    • The human Rhesus-associated RhAG protein and a kidney homologue promote ammonium transport in yeast
    • Marini AM, Matassi G, Raynal V, André B, Cartron JP, et al. (2000) The human Rhesus-associated RhAG protein and a kidney homologue promote ammonium transport in yeast. Nature Genet 26: 341-344.
    • (2000) Nature Genet , vol.26 , pp. 341-344
    • Marini, A.M.1    Matassi, G.2    Raynal, V.3    André, B.4    Cartron, J.P.5
  • 65
    • 0028922586 scopus 로고
    • LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions
    • Wallace AC, Laskowski RA, Thornton JM, (1995) LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Eng 8: 127-134.
    • (1995) Protein Eng , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 66
    • 39749184089 scopus 로고    scopus 로고
    • Ammonia-induced formation of an AmtB-GlnK complex is not sufficient for nitrogenase regulation in the photosynthetic bacterium Rhodobacter capsulatus
    • Tremblay PL, Hallenbeck PC, (2008) Ammonia-induced formation of an AmtB-GlnK complex is not sufficient for nitrogenase regulation in the photosynthetic bacterium Rhodobacter capsulatus. J Bacteriol 190: 1588-1594.
    • (2008) J Bacteriol , vol.190 , pp. 1588-1594
    • Tremblay, P.L.1    Hallenbeck, P.C.2
  • 67
    • 33846106811 scopus 로고    scopus 로고
    • Inhibitory complex of the transmembrane ammonia channel, AmtB, and the cytosolic regulatory protein, GlnK, at 1.96 A
    • Gruswitz F, O'Connell J, 3rd, Stroud RM (2007) Inhibitory complex of the transmembrane ammonia channel, AmtB, and the cytosolic regulatory protein, GlnK, at 1.96 A. Proc Natl Acad Sci USA. 104: 42-47.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 42-47
    • Gruswitz, F.1    O'Connell 3rd, J.2    Stroud, R.M.3
  • 68
    • 80052019711 scopus 로고    scopus 로고
    • The pivotal twin histidines and aromatic triad of the Escherichia coli ammonium channel AmtB can be replaced
    • Hall JA, Kustu S, (2011) The pivotal twin histidines and aromatic triad of the Escherichia coli ammonium channel AmtB can be replaced. Proc Natl Acad Sci USA 108: 13270-13274.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 13270-13274
    • Hall, J.A.1    Kustu, S.2
  • 69
    • 51349144690 scopus 로고    scopus 로고
    • A Mep2-dependent Transcriptional Profile Links Permease Function to Gene Expression during Pseudohyphal Growth in Saccharomyces cerevisiae
    • Rutherford JC, Chua G, Hughes T, Cardenas ME, Heitman J, (2008) A Mep2-dependent Transcriptional Profile Links Permease Function to Gene Expression during Pseudohyphal Growth in Saccharomyces cerevisiae. Mol Biol Cell 19: 3028-3039.
    • (2008) Mol Biol Cell , vol.19 , pp. 3028-3039
    • Rutherford, J.C.1    Chua, G.2    Hughes, T.3    Cardenas, M.E.4    Heitman, J.5
  • 70
    • 52049107109 scopus 로고    scopus 로고
    • Distinct transport mechanisms in yeast ammonium transport/sensor proteins of the Mep/Amt/Rh family and impact on filamentation
    • Boeckstaens M, Andre B, Marini AM, (2008) Distinct transport mechanisms in yeast ammonium transport/sensor proteins of the Mep/Amt/Rh family and impact on filamentation. J Biol Chem 283: 21362-21370.
    • (2008) J Biol Chem , vol.283 , pp. 21362-21370
    • Boeckstaens, M.1    Andre, B.2    Marini, A.M.3


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