-
1
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, et al. (2005) Diversity of the human intestinal microbial flora. Science 308: 1635-1638.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
-
2
-
-
79957574938
-
Moving pictures of the human microbiome
-
Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, et al. (2011) Moving pictures of the human microbiome. Genome Biol 12: R50.
-
(2011)
Genome Biol
, vol.12
-
-
Caporaso, J.G.1
Lauber, C.L.2
Costello, E.K.3
Berg-Lyons, D.4
Gonzalez, A.5
-
3
-
-
2442616728
-
Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers
-
Vanhoutte T, Huys G, Brandt E, Swings J, (2004) Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol Ecol 48: 437-446.
-
(2004)
FEMS Microbiol Ecol
, vol.48
, pp. 437-446
-
-
Vanhoutte, T.1
Huys, G.2
Brandt, E.3
Swings, J.4
-
4
-
-
0037340434
-
Angiogenins: a new class of microbicidal proteins involved in innate immunity
-
Hooper LV, Stappenbeck TS, Hong CV, Gordon JI, (2003) Angiogenins: a new class of microbicidal proteins involved in innate immunity. Nat Immunol 4: 269-273.
-
(2003)
Nat Immunol
, vol.4
, pp. 269-273
-
-
Hooper, L.V.1
Stappenbeck, T.S.2
Hong, C.V.3
Gordon, J.I.4
-
5
-
-
22144490199
-
An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
-
Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL, (2005) An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122: 107-118.
-
(2005)
Cell
, vol.122
, pp. 107-118
-
-
Mazmanian, S.K.1
Liu, C.H.2
Tzianabos, A.O.3
Kasper, D.L.4
-
6
-
-
33845901507
-
Microbial ecology: human gut microbes associated with obesity
-
Ley RE, Turnbaugh PJ, Klein S, Gordon JI, (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444: 1022-1023.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
7
-
-
84867225799
-
The role of the gut microbiota in nutrition and health
-
Flint HJ, Scott KP, Louis P, Duncan SH, (2012) The role of the gut microbiota in nutrition and health. Nature reviews Gastroenterology & hepatology 9: 577-589.
-
(2012)
Nature Reviews Gastroenterology & Hepatology
, vol.9
, pp. 577-589
-
-
Flint, H.J.1
Scott, K.P.2
Louis, P.3
Duncan, S.H.4
-
8
-
-
34248152283
-
Long-term ecological impacts of antibiotic administration on the human intestinal microbiota
-
Jernberg C, Lofmark S, Edlund C, Jansson JK, (2007) Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. ISME J 1: 56-66.
-
(2007)
ISME J
, vol.1
, pp. 56-66
-
-
Jernberg, C.1
Lofmark, S.2
Edlund, C.3
Jansson, J.K.4
-
9
-
-
33845349674
-
Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes
-
Lofmark S, Jernberg C, Jansson JK, Edlund C, (2006) Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes. J Antimicrob Chemother 58: 1160-1167.
-
(2006)
J Antimicrob Chemother
, vol.58
, pp. 1160-1167
-
-
Lofmark, S.1
Jernberg, C.2
Jansson, J.K.3
Edlund, C.4
-
10
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, et al. (2010) Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A 107: 14691-14696.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
-
11
-
-
67149141502
-
Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota
-
Martinez I, Wallace G, Zhang C, Legge R, Benson AK, et al. (2009) Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota. Appl Environ Microbiol 75: 4175-4184.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4175-4184
-
-
Martinez, I.1
Wallace, G.2
Zhang, C.3
Legge, R.4
Benson, A.K.5
-
12
-
-
33845438587
-
Effect of bowel preparation and colonoscopy on post-procedure intestinal microbiota composition
-
Mai V, Greenwald B, Morris JG Jr, Raufman JP, Stine OC, (2006) Effect of bowel preparation and colonoscopy on post-procedure intestinal microbiota composition. Gut 55: 1822-1823.
-
(2006)
Gut
, vol.55
, pp. 1822-1823
-
-
Mai, V.1
Greenwald, B.2
Morris Jr., J.G.3
Raufman, J.P.4
Stine, O.C.5
-
13
-
-
84863231354
-
Standard colonic lavage alters the natural state of mucosal-associated microbiota in the human colon
-
Harrell L, Wang Y, Antonopoulos D, Young V, Lichtenstein L, et al. (2012) Standard colonic lavage alters the natural state of mucosal-associated microbiota in the human colon. PLoS One 7: e32545.
-
(2012)
PLoS One
, vol.7
-
-
Harrell, L.1
Wang, Y.2
Antonopoulos, D.3
Young, V.4
Lichtenstein, L.5
-
14
-
-
48549097837
-
Biostructure of fecal microbiota in healthy subjects and patients with chronic idiopathic diarrhea
-
Swidsinski A, Loening-Baucke V, Verstraelen H, Osowska S, Doerffel Y, (2008) Biostructure of fecal microbiota in healthy subjects and patients with chronic idiopathic diarrhea. Gastroenterology 135: 568-579.
-
(2008)
Gastroenterology
, vol.135
, pp. 568-579
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Verstraelen, H.3
Osowska, S.4
Doerffel, Y.5
-
15
-
-
0033989325
-
Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers
-
Walter J, Tannock GW, Tilsala-Timisjarvi A, Rodtong S, Loach DM, et al. (2000) Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers. Appl Environ Microbiol 66: 297-303.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 297-303
-
-
Walter, J.1
Tannock, G.W.2
Tilsala-Timisjarvi, A.3
Rodtong, S.4
Loach, D.M.5
-
16
-
-
77953323855
-
PCR-denaturing gradient gel electrophoresis of complex microbial communities: a two-step approach to address the effect of gel-to-gel variation and allow valid comparisons across a large dataset
-
Tourlomousis P, Kemsley EK, Ridgway KP, Toscano MJ, Humphrey TJ, et al. (2010) PCR-denaturing gradient gel electrophoresis of complex microbial communities: a two-step approach to address the effect of gel-to-gel variation and allow valid comparisons across a large dataset. Microb Ecol 59: 776-786.
-
(2010)
Microb Ecol
, vol.59
, pp. 776-786
-
-
Tourlomousis, P.1
Kemsley, E.K.2
Ridgway, K.P.3
Toscano, M.J.4
Humphrey, T.J.5
-
17
-
-
58149395777
-
Common problems in the analyses of microbial community by denaturing gradient gel electrophoresis (DGGE)
-
Xing DF, Ren NQ, (2006) Common problems in the analyses of microbial community by denaturing gradient gel electrophoresis (DGGE). Wei Sheng Wu Xue Bao 46: 331-335.
-
(2006)
Wei Sheng Wu Xue Bao
, vol.46
, pp. 331-335
-
-
Xing, D.F.1
Ren, N.Q.2
-
18
-
-
78449296237
-
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
-
Benson AK, Kelly SA, Legge R, Ma F, Low SJ, et al. (2010) Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proceedings of the National Academy of Sciences of the United States of America 107: 18933-18938.
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 18933-18938
-
-
Benson, A.K.1
Kelly, S.A.2
Legge, R.3
Ma, F.4
Low, S.J.5
-
19
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
20
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ, (2011) Removing noise from pyrosequenced amplicons. BMC bioinformatics 12: 38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
21
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R, (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
22
-
-
34547152047
-
Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities
-
Ashby MN, Rine J, Mongodin EF, Nelson KE, Dimster-Denk D, (2007) Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities. Appl Environ Microbiol 73: 4532-4542.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4532-4542
-
-
Ashby, M.N.1
Rine, J.2
Mongodin, E.F.3
Nelson, K.E.4
Dimster-Denk, D.5
-
23
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, et al. (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci U S A 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark Welch, D.4
Huse, S.M.5
-
24
-
-
64949116162
-
Phylogenetic diversity and vertical distribution of a halobacterial community in the atmosphere of an Asian dust (KOSA) source region, Dunhuang City
-
Maki T, Susuki S, Kobayashi F, Kakikawa M, Yamada M, et al. (2008) Phylogenetic diversity and vertical distribution of a halobacterial community in the atmosphere of an Asian dust (KOSA) source region, Dunhuang City. Air Qual Atmos Health 1: 81-89.
-
(2008)
Air Qual Atmos Health
, vol.1
, pp. 81-89
-
-
Maki, T.1
Susuki, S.2
Kobayashi, F.3
Kakikawa, M.4
Yamada, M.5
-
25
-
-
0031959006
-
Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
-
Muyzer G, Smalla K, (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73: 127-141.
-
(1998)
Antonie Van Leeuwenhoek
, vol.73
, pp. 127-141
-
-
Muyzer, G.1
Smalla, K.2
-
26
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, et al. (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504.
-
(2011)
Genome Res
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
-
27
-
-
0030844080
-
Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes
-
Wang GC, Wang Y, (1997) Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes. Appl Environ Microbiol 63: 4645-4650.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4645-4650
-
-
Wang, G.C.1
Wang, Y.2
-
28
-
-
33846173933
-
Does colonoscopy cause increased ulcerative colitis symptoms?
-
Menees S, Higgins P, Korsnes S, Elta G, (2007) Does colonoscopy cause increased ulcerative colitis symptoms? Inflammatory bowel diseases 13: 12-18.
-
(2007)
Inflammatory Bowel Diseases
, vol.13
, pp. 12-18
-
-
Menees, S.1
Higgins, P.2
Korsnes, S.3
Elta, G.4
-
29
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, et al. (2007) Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A 104: 13780-13785.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
-
30
-
-
78650973052
-
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease
-
Walker AW, Sanderson JD, Churcher C, Parkes GC, Hudspith BN, et al. (2011) High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol 11: 7.
-
(2011)
BMC Microbiol
, vol.11
, pp. 7
-
-
Walker, A.W.1
Sanderson, J.D.2
Churcher, C.3
Parkes, G.C.4
Hudspith, B.N.5
-
31
-
-
44349164525
-
Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease
-
Takaishi H, Matsuki T, Nakazawa A, Takada T, Kado S, et al. (2008) Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease. Int J Med Microbiol 298: 463-472.
-
(2008)
Int J Med Microbiol
, vol.298
, pp. 463-472
-
-
Takaishi, H.1
Matsuki, T.2
Nakazawa, A.3
Takada, T.4
Kado, S.5
-
32
-
-
0036300743
-
Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
-
Zoetendal EG, von Wright A, Vilpponen-Salmela T, Ben-Amor K, Akkermans AD, et al. (2002) Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol 68: 3401-3407.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3401-3407
-
-
Zoetendal, E.G.1
von Wright, A.2
Vilpponen-Salmela, T.3
Ben-Amor, K.4
Akkermans, A.D.5
|