메뉴 건너뛰기




Volumn 10, Issue , 2013, Pages

A mobile genetic element with unknown function found in distantly related viruses

Author keywords

Astroviruses; Caliciviruses; Coronaviruses; Mobile genetic element; Picornaviruses; s2m

Indexed keywords

RNA DIRECTED RNA POLYMERASE;

EID: 84876996381     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-132     Document Type: Article
Times cited : (40)

References (23)
  • 1
    • 0030981902 scopus 로고    scopus 로고
    • Molecular characterisation of the 3'-end of the astrovirus genome
    • DOI 10.1007/s007050050112
    • Molecular characterisation of the 3′-end of the astrovirus genome. Monceyron C, Grinde B, Jonassen TO, Arch Virol 1997 142 699 706 10.1007/s007050050112 9170498 (Pubitemid 27185676)
    • (1997) Archives of Virology , vol.142 , Issue.4 , pp. 699-706
    • Monceyron, C.1    Grinde, B.2    Jonassen, T.O.3
  • 2
    • 6844266251 scopus 로고    scopus 로고
    • A common RNA motif in the 3' end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus
    • A common RNA motif in the 3′ end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. Jonassen CM, Jonassen TO, Grinde B, J Gen Virol 1998 79 Pt 4 715 718 9568965 (Pubitemid 28161944)
    • (1998) Journal of General Virology , vol.79 , Issue.4 , pp. 715-718
    • Jonassen, C.M.1    Jonassen, T.O.2    Grinde, B.3
  • 3
    • 80054735130 scopus 로고    scopus 로고
    • Screening of feral and wood pigeons for viruses harbouring a conserved mobile viral element: Characterization of novel Astroviruses and Picornaviruses
    • 10.1371/journal.pone.0025964 22043297
    • Screening of feral and wood pigeons for viruses harbouring a conserved mobile viral element: characterization of novel Astroviruses and Picornaviruses. Kofstad T, Jonassen CM, PLoS One 2011 6 25964 10.1371/journal.pone.0025964 22043297
    • (2011) PLoS One , vol.6 , pp. 525964
    • Kofstad, T.1    Jonassen, C.M.2
  • 4
    • 14644402508 scopus 로고    scopus 로고
    • The structure of a rigorously conserved RNA element within the SARS virus genome
    • DOI 10.1371/journal.pbio.0030005
    • The structure of a rigorously conserved RNA element within the SARS virus genome. Robertson MP, Igel H, Baertsch R, Haussler D, Ares M Jr, Scott WG, PLoS Biol 2005 3 5 10.1371/journal.pbio.0030005 15630477 (Pubitemid 40318110)
    • (2005) PLoS Biology , vol.3 , Issue.1
    • Robertson, M.P.1    Igel, H.2    Baertsch, R.3    Haussler, D.4    Ares Jr., M.5    Scott, W.G.6
  • 5
    • 84934439827 scopus 로고    scopus 로고
    • Detection and sequence characterization of the 3′-end of coronavirus genomes harboring the highly conserved RNA motif s2m
    • 10.1007/978-1-59745-181-9-3 19057866
    • Detection and sequence characterization of the 3′-end of coronavirus genomes harboring the highly conserved RNA motif s2m. Jonassen CM, Methods Mol Biol 2008 454 27 34 10.1007/978-1-59745-181-9-3 19057866
    • (2008) Methods Mol Biol , vol.454 , pp. 27-34
    • Jonassen, C.M.1
  • 6
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Mfold web server for nucleic acid folding and hybridization prediction. Zuker M, Nucleic Acids Res 2003 31 3406 3415 10.1093/nar/gkg595 12824337 (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 7
    • 0347126300 scopus 로고    scopus 로고
    • ACLAME: A CLAssification of mobile genetic elements
    • 10.1093/nar/gkh084 14681355
    • ACLAME: a CLAssification of mobile genetic elements. Leplae R, Hebrant A, Wodak SJ, Toussaint A, Nucleic Acids Res 2004 32 45 D49 10.1093/nar/gkh084 14681355
    • (2004) Nucleic Acids Res , vol.32
    • Leplae, R.1    Hebrant, A.2    Wodak, S.J.3    Toussaint, A.4
  • 8
    • 75549086985 scopus 로고    scopus 로고
    • ACLAME: A CLAssification of mobile genetic elements, update 2010
    • 10.1093/nar/gkp938 19933762
    • ACLAME: a CLAssification of mobile genetic elements, update 2010. Leplae R, Lima-Mendez G, Toussaint A, Nucleic Acids Res 2010 38 57 D61 10.1093/nar/gkp938 19933762
    • (2010) Nucleic Acids Res , vol.38
    • Leplae, R.1    Lima-Mendez, G.2    Toussaint, A.3
  • 9
    • 33645972304 scopus 로고    scopus 로고
    • A phylogenetic survey of recombination frequency in plant RNA viruses
    • 10.1007/s00705-005-0675-x 16292597
    • A phylogenetic survey of recombination frequency in plant RNA viruses. Chare ER, Holmes EC, Arch Virol 2006 151 933 946 10.1007/s00705-005-0675-x 16292597
    • (2006) Arch Virol , vol.151 , pp. 933-946
    • Chare, E.R.1    Holmes, E.C.2
  • 10
    • 80053377130 scopus 로고    scopus 로고
    • Bacteriophages and their genomes
    • 10.1016/j.coviro.2011.06.009
    • Bacteriophages and their genomes. Hatfull GF, Hendrix RW, Current Opinion Virol 2011 1 298 303 10.1016/j.coviro.2011.06.009
    • (2011) Current Opinion Virol , vol.1 , pp. 298-303
    • Hatfull, G.F.1    Hendrix, R.W.2
  • 11
    • 84862306931 scopus 로고    scopus 로고
    • Evolutionary genomics of mycovirus-related dsRNA viruses reveals cross-family horizontal gene transfer and evolution of diverse viral lineages
    • 10.1186/1471-2148-12-91 22716092
    • Evolutionary genomics of mycovirus-related dsRNA viruses reveals cross-family horizontal gene transfer and evolution of diverse viral lineages. Liu H, Fu Y, Xie J, Cheng J, Ghabrial SA, Li G, Peng Y, Yi X, Jiang D, BMC Evol Biol 2012 12 91 10.1186/1471-2148-12-91 22716092
    • (2012) BMC Evol Biol , vol.12 , pp. 91
    • Liu, H.1    Fu, Y.2    Xie, J.3    Cheng, J.4    Ghabrial, S.A.5    Li, G.6    Peng, Y.7    Yi, X.8    Jiang, D.9
  • 12
    • 77956845187 scopus 로고    scopus 로고
    • Comparative analysis of six genome sequences of three novel picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal of two novel genera, orthoturdivirus and paraturdivirus, in the family picornaviridae
    • 10.1099/vir.0.021717-0 20554801
    • Comparative analysis of six genome sequences of three novel picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal of two novel genera, orthoturdivirus and paraturdivirus, in the family picornaviridae. Woo PC, Lau SK, Huang Y, Lam CS, Poon RW, Tsoi HW, Lee P, Tse H, Chan AS, Luk G, J Gen Virol 2010 91 2433 2448 10.1099/vir.0.021717-0 20554801
    • (2010) J Gen Virol , vol.91 , pp. 2433-2448
    • Woo, P.C.1    Lau, S.K.2    Huang, Y.3    Lam, C.S.4    Poon, R.W.5    Tsoi, H.W.6    Lee, P.7    Tse, H.8    Chan, A.S.9    Luk, G.10
  • 14
    • 84861307149 scopus 로고    scopus 로고
    • Discovery of seven novel mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus
    • 10.1128/JVI.06540-11 22278237
    • Discovery of seven novel mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. Woo PC, Lau SK, Lam CS, Lau CC, Tsang AK, Lau JH, Bai R, Teng JL, Tsang CC, Wang M, J Virol 2012 86 3995 4008 10.1128/JVI.06540-11 22278237
    • (2012) J Virol , vol.86 , pp. 3995-4008
    • Woo, P.C.1    Lau, S.K.2    Lam, C.S.3    Lau, C.C.4    Tsang, A.K.5    Lau, J.H.6    Bai, R.7    Teng, J.L.8    Tsang, C.C.9    Wang, M.10
  • 15
    • 3142673612 scopus 로고    scopus 로고
    • The 3′ cis-acting genomic replication element of the severe acute respiratory syndrome coronavirus can function in the murine coronavirus genome
    • DOI 10.1128/JVI.78.14.7846-7851.2004
    • The 3′ cis-acting genomic replication element of the severe acute respiratory syndrome coronavirus can function in the murine coronavirus genome. Goebel SJ, Taylor J, Masters PS, J Virol 2004 78 7846 7851 10.1128/JVI.78.14. 7846-7851.2004 15220462 (Pubitemid 38915934)
    • (2004) Journal of Virology , vol.78 , Issue.14 , pp. 7846-7851
    • Goebel, S.J.1    Taylor, J.2    Masters, P.S.3
  • 16
    • 84859706024 scopus 로고    scopus 로고
    • Discovery and genomic characterization of a novel bat sapovirus with unusual genomic features and phylogenetic position
    • 10.1371/journal.pone.0034987 22514697
    • Discovery and genomic characterization of a novel bat sapovirus with unusual genomic features and phylogenetic position. Tse H, Chan WM, Li KS, Lau SK, Woo PC, Yuen KY, PLoS One 2012 7 34987 10.1371/journal.pone.0034987 22514697
    • (2012) PLoS One , vol.7 , pp. 534987
    • Tse, H.1    Chan, W.M.2    Li, K.S.3    Lau, S.K.4    Woo, P.C.5    Yuen, K.Y.6
  • 18
    • 77957839777 scopus 로고    scopus 로고
    • Mechanisms of viral emergence
    • 10.1051/vetres/2010010 20167200
    • Mechanisms of viral emergence. Domingo E, Vet Res 2010 41 38 10.1051/vetres/2010010 20167200
    • (2010) Vet Res , vol.41 , pp. 38
    • Domingo, E.1
  • 19
    • 84862587403 scopus 로고    scopus 로고
    • Evidence for a cytoplasmic microprocessor of pri-miRNAs
    • 10.1261/rna.032268.112 22635403
    • Evidence for a cytoplasmic microprocessor of pri-miRNAs. Shapiro JS, Langlois RA, Pham AM, Tenoever BR, RNA 2012 18 1338 1346 10.1261/rna.032268.112 22635403
    • (2012) RNA , vol.18 , pp. 1338-1346
    • Shapiro, J.S.1    Langlois, R.A.2    Pham, A.M.3    Tenoever, B.R.4
  • 20
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Thompson JD, Higgins DG, Gibson TJ, Nucleic Acids Res 1994 22 4673 4680 10.1093/nar/22.22.4673 7984417 (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 21
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Hall TA, Nucleic Acids Symp Ser 1999 41 95 98
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 22
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • DOI 10.1093/bioinformatics/btl446
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Stamatakis A, Bioinformatics 2006 22 2688 2690 10.1093/bioinformatics/btl446 16928733 (Pubitemid 44642609)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 23
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • CONSEL: for assessing the confidence of phylogenetic tree selection. Shimodaira H, Hasegawa M, Bioinformatics 2001 17 1246 1247 10.1093/ bioinformatics/17.12.1246 11751242 (Pubitemid 33735360)
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.