-
1
-
-
0001639179
-
The growth of bacterial cultures
-
Monod J, (1949) The growth of bacterial cultures. Annu Rev Microbiol 3: 371-394.
-
(1949)
Annu Rev Microbiol
, vol.3
, pp. 371-394
-
-
Monod, J.1
-
2
-
-
0014076155
-
Glucose-lactose diauxie in Escherichia coli
-
Loomis WF, Magasanik B, (1967) Glucose-lactose diauxie in Escherichia coli. J Bacteriol 93: 1397-1401.
-
(1967)
J Bacteriol
, vol.93
, pp. 1397-1401
-
-
Loomis, W.F.1
Magasanik, B.2
-
3
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob F, Monod J, (1961) Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol 3: 318-356.
-
(1961)
J Mol Biol
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
5
-
-
0017372124
-
Control of ribosome synthesis in Escherichia coli: analysis of an energy source shift-down
-
Molin S, von Meyenburg K, Maaloe O, Hansen MT, Pato ML, (1977) Control of ribosome synthesis in Escherichia coli: analysis of an energy source shift-down. J Bacteriol 131: 7-17.
-
(1977)
J Bacteriol
, vol.131
, pp. 7-17
-
-
Molin, S.1
von Meyenburg, K.2
Maaloe, O.3
Hansen, M.T.4
Pato, M.L.5
-
6
-
-
0017378044
-
Control of protein synthesis in Escherichia coli: analysis of an energy source shift-down
-
Johnsen K, Molin S, Karlstrom O, Maaloe O, (1977) Control of protein synthesis in Escherichia coli: analysis of an energy source shift-down. J Bacteriol 131: 18-29.
-
(1977)
J Bacteriol
, vol.131
, pp. 18-29
-
-
Johnsen, K.1
Molin, S.2
Karlstrom, O.3
Maaloe, O.4
-
7
-
-
0017330253
-
Establishment of exponential growth after a nutritional shift-up in Escherichia coli B/r: accumulation of deoxyribonucleic acid, ribonucleic acid, and protein
-
Brunschede H, Dove TL, Bremer H, (1977) Establishment of exponential growth after a nutritional shift-up in Escherichia coli B/r: accumulation of deoxyribonucleic acid, ribonucleic acid, and protein. J Bacteriol 129: 1020-1033.
-
(1977)
J Bacteriol
, vol.129
, pp. 1020-1033
-
-
Brunschede, H.1
Dove, T.L.2
Bremer, H.3
-
8
-
-
0025825078
-
Growth rate of Escherichia coli
-
Marr AG, (1991) Growth rate of Escherichia coli. Microbiol Rev 55: 316-333.
-
(1991)
Microbiol Rev
, vol.55
, pp. 316-333
-
-
Marr, A.G.1
-
9
-
-
0001140587
-
The transition between different physiological states during balanced growth of Salmonella typhimurium
-
Kjeldgaard NO, Maaloe O, Schaechter M, (1958) The transition between different physiological states during balanced growth of Salmonella typhimurium. J Gen Microbiol 19: 607-616.
-
(1958)
J Gen Microbiol
, vol.19
, pp. 607-616
-
-
Kjeldgaard, N.O.1
Maaloe, O.2
Schaechter, M.3
-
10
-
-
0015218347
-
A consequence of the rel gene during a glucose to lactate downshift in Escherichia coli
-
Winslow RM, (1971) A consequence of the rel gene during a glucose to lactate downshift in Escherichia coli. J Biol Chem 246: 4872-4877.
-
(1971)
J Biol Chem
, vol.246
, pp. 4872-4877
-
-
Winslow, R.M.1
-
11
-
-
0025020967
-
Cell volume increase in Escherichia coli after shifts to richer media
-
Kubitschek HE, (1990) Cell volume increase in Escherichia coli after shifts to richer media. J Bacteriol 172: 94-101.
-
(1990)
J Bacteriol
, vol.172
, pp. 94-101
-
-
Kubitschek, H.E.1
-
12
-
-
0017177724
-
Growth response of Escherichia coli to nutritional shift-up: immediate division stimulation in slow-growing cells
-
Sloan JB, Urban JE, (1976) Growth response of Escherichia coli to nutritional shift-up: immediate division stimulation in slow-growing cells. J Bacteriol 128: 302-308.
-
(1976)
J Bacteriol
, vol.128
, pp. 302-308
-
-
Sloan, J.B.1
Urban, J.E.2
-
13
-
-
0014601368
-
Inhibitor-induced shift-downs in Escherichia coli
-
Nazar RN, Tze-Fei Wong J, (1969) Inhibitor-induced shift-downs in Escherichia coli. J Bacteriol 100: 956-961.
-
(1969)
J Bacteriol
, vol.100
, pp. 956-961
-
-
Nazar, R.N.1
Tze-Fei Wong, J.2
-
14
-
-
79951552049
-
Bet hedging or not? A guide to proper classification of microbial survival strategies
-
de Jong IG, Haccou P, Kuipers OP, (2011) Bet hedging or not? A guide to proper classification of microbial survival strategies. Bioessays 33: 215-223.
-
(2011)
Bioessays
, vol.33
, pp. 215-223
-
-
de Jong, I.G.1
Haccou, P.2
Kuipers, O.P.3
-
15
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
Dekel E, Alon U, (2005) Optimality and evolutionary tuning of the expression level of a protein. Nature 436: 588-592.
-
(2005)
Nature
, vol.436
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
16
-
-
33846097600
-
Dynamics of single-cell gene expression
-
Longo D, Hasty J, (2006) Dynamics of single-cell gene expression. Mol Syst Biol 2: 64.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 64
-
-
Longo, D.1
Hasty, J.2
-
17
-
-
64749116742
-
Using movies to analyse gene circuit dynamics in single cells
-
Locke JC, Elowitz MB, (2009) Using movies to analyse gene circuit dynamics in single cells. Nat Rev Microbiol 7: 383-392.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 383-392
-
-
Locke, J.C.1
Elowitz, M.B.2
-
18
-
-
68949215494
-
Microfluidic devices for measuring gene network dynamics in single cells
-
Bennett MR, Hasty J, (2009) Microfluidic devices for measuring gene network dynamics in single cells. Nat Rev Genet 10: 628-638.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 628-638
-
-
Bennett, M.R.1
Hasty, J.2
-
19
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz MB, Levine AJ, Siggia ED, Swain PS, (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
20
-
-
54249083606
-
A stochastic single-molecule event triggers phenotype switching of a bacterial cell
-
Choi PJ, Cai L, Frieda K, Xie XS, (2008) A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 322: 442-446.
-
(2008)
Science
, vol.322
, pp. 442-446
-
-
Choi, P.J.1
Cai, L.2
Frieda, K.3
Xie, X.S.4
-
21
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A, (2004) Multistability in the lactose utilization network of Escherichia coli. Nature 427: 737-740.
-
(2004)
Nature
, vol.427
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
Van Oudenaarden, A.5
-
22
-
-
0001389945
-
Enzyme induction as an all-or-non phenomenon
-
Novick A, Weiner M, (1957) Enzyme induction as an all-or-non phenomenon. Proc Natl Acad Sci U S A 43: 553-566.
-
(1957)
Proc Natl Acad Sci U S A
, vol.43
, pp. 553-566
-
-
Novick, A.1
Weiner, M.2
-
23
-
-
77951129749
-
Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch
-
Robert L, Paul G, Chen Y, Taddei F, Baigl D, et al. (2010) Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch. Mol Syst Biol 6: 357.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 357
-
-
Robert, L.1
Paul, G.2
Chen, Y.3
Taddei, F.4
Baigl, D.5
-
24
-
-
70349634414
-
A microscope automated fluidic system to study bacterial processes in real time
-
Ducret A, Maisonneuve E, Notareschi P, Grossi A, Mignot T, et al. (2009) A microscope automated fluidic system to study bacterial processes in real time. PLoS One 4: e7282.
-
(2009)
PLoS One
, vol.4
-
-
Ducret, A.1
Maisonneuve, E.2
Notareschi, P.3
Grossi, A.4
Mignot, T.5
-
25
-
-
44849085110
-
A microfluidic device for temporally controlled gene expression and long-term fluorescent imaging in unperturbed dividing yeast cells
-
Charvin G, Cross FR, Siggia ED, (2008) A microfluidic device for temporally controlled gene expression and long-term fluorescent imaging in unperturbed dividing yeast cells. PLoS One 3: e1468.
-
(2008)
PLoS One
, vol.3
-
-
Charvin, G.1
Cross, F.R.2
Siggia, E.D.3
-
26
-
-
0015093174
-
Effect of nutrient concentration on the growth of Escherichia coli
-
Shehata TE, Marr AG, (1971) Effect of nutrient concentration on the growth of Escherichia coli. J Bacteriol 107: 210-216.
-
(1971)
J Bacteriol
, vol.107
, pp. 210-216
-
-
Shehata, T.E.1
Marr, A.G.2
-
27
-
-
33749517682
-
In silico evolved lac operons exhibit bistability for artificial inducers, but not for lactose
-
van Hoek MJA, Hogeweg P, (2006) In silico evolved lac operons exhibit bistability for artificial inducers, but not for lactose. Biophys J 91: 2833-2843.
-
(2006)
Biophys J
, vol.91
, pp. 2833-2843
-
-
van Hoek, M.J.A.1
Hogeweg, P.2
-
28
-
-
54049156116
-
Determinants of bistability in induction of the Escherichia coli lac operon
-
Dreisigmeyer DW, Stajic J, Nemenman I, Hlavacek WS, Wall WE, (2008) Determinants of bistability in induction of the Escherichia coli lac operon. IET Syst Biol 2: 293-303.
-
(2008)
IET Syst Biol
, vol.2
, pp. 293-303
-
-
Dreisigmeyer, D.W.1
Stajic, J.2
Nemenman, I.3
Hlavacek, W.S.4
Wall, W.E.5
-
29
-
-
33746415885
-
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli
-
Zaslaver A, Bren A, Ronen M, Itzkovitz S, Kikoin I, et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli Nat Methods. 3: 623-628.
-
(2006)
Nat Methods
, vol.3
, pp. 623-628
-
-
Zaslaver, A.1
Bren, A.2
Ronen, M.3
Itzkovitz, S.4
Kikoin, I.5
-
30
-
-
50349086894
-
Timing and dynamics of single cell gene expression in the arabinose utilization system
-
Megerle JA, Fritz G, Gerland U, Kirsten J, Radler JO, (2008) Timing and dynamics of single cell gene expression in the arabinose utilization system. Biophys J 95: 2103-2115.
-
(2008)
Biophys J
, vol.95
, pp. 2103-2115
-
-
Megerle, J.A.1
Fritz, G.2
Gerland, U.3
Kirsten, J.4
Radler, J.O.5
-
31
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L, Friedman N, Xie XS, (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-362.
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
32
-
-
0035824029
-
Regulation of gene expression in flux balance models of metabolism
-
Covert MW, Schilling CH, Palsson B, (2001) Regulation of gene expression in flux balance models of metabolism. J Theor Biol 213: 73-88.
-
(2001)
J Theor Biol
, vol.213
, pp. 73-88
-
-
Covert, M.W.1
Schilling, C.H.2
Palsson, B.3
-
33
-
-
0035206064
-
The organization of metabolic reaction networks. III. Application for diauxic growth on glucose and lactose
-
Kremling A, Bettenbrock K, Laube B, Jahreis K, Lengeler JW, et al. (2001) The organization of metabolic reaction networks. III. Application for diauxic growth on glucose and lactose. Metab Eng 3: 362-379.
-
(2001)
Metab Eng
, vol.3
, pp. 362-379
-
-
Kremling, A.1
Bettenbrock, K.2
Laube, B.3
Jahreis, K.4
Lengeler, J.W.5
-
34
-
-
0031105797
-
Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose
-
Wong P, Gladney S, Keasling J, (1997) Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose. Biotechnol Prog 13: 132-143.
-
(1997)
Biotechnol Prog
, vol.13
, pp. 132-143
-
-
Wong, P.1
Gladney, S.2
Keasling, J.3
-
35
-
-
0036708443
-
Dynamic flux balance analysis of diauxic growth in Escherichia coli
-
Mahadevan R, Edwards J, Doyle Fr, (2002) Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys J 83: 1331-1340.
-
(2002)
Biophys J
, vol.83
, pp. 1331-1340
-
-
Mahadevan, R.1
Edwards, J.2
Doyle, F.3
-
36
-
-
77949385752
-
Bacterial adaptation through distributed sensing of metabolic fluxes
-
Kotte O, Zaugg JB, Heinemann M, (2010) Bacterial adaptation through distributed sensing of metabolic fluxes. Mol Syst Biol 6: 355.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 355
-
-
Kotte, O.1
Zaugg, J.B.2
Heinemann, M.3
-
37
-
-
81355150962
-
Speed, sensitivity, and bistability in auto-activating signaling circuits
-
Hermsen R, Erickson DW, Hwa T, (2011) Speed, sensitivity, and bistability in auto-activating signaling circuits. PLoS Comput Biol 7: e1002265.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Hermsen, R.1
Erickson, D.W.2
Hwa, T.3
-
39
-
-
15544388848
-
Noise propagation in gene networks
-
Pedraza JM, van Oudenaarden A, (2005) Noise propagation in gene networks. Science 307: 1965-1969.
-
(2005)
Science
, vol.307
, pp. 1965-1969
-
-
Pedraza, J.M.1
van Oudenaarden, A.2
-
40
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
Eldar A, Elowitz MB, (2010) Functional roles for noise in genetic circuits. Nature 467: 167-173.
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A.1
Elowitz, M.B.2
-
41
-
-
41349119880
-
Stochastic switching as a survival strategy in fluctuating environments
-
Acar M, Mettetal JT, van Oudenaarden A, (2008) Stochastic switching as a survival strategy in fluctuating environments. Nat Genet 40: 471-475.
-
(2008)
Nat Genet
, vol.40
, pp. 471-475
-
-
Acar, M.1
Mettetal, J.T.2
van Oudenaarden, A.3
-
42
-
-
50949119269
-
Regulatory control and the costs and benefits of biochemical noise
-
Tǎnase-Nicola S, ten Wolde PR, (2008) Regulatory control and the costs and benefits of biochemical noise. PLoS Comput Biol 4: e1000125.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Tǎnase-Nicola, S.1
ten Wolde, P.R.2
-
43
-
-
38049146129
-
Cost-benefit theory and optimal design of gene regulation functions
-
Kalisky T, Dekel E, Alon U, (2007) Cost-benefit theory and optimal design of gene regulation functions. Phys Biol 4: 229-245.
-
(2007)
Phys Biol
, vol.4
, pp. 229-245
-
-
Kalisky, T.1
Dekel, E.2
Alon, U.3
-
44
-
-
80155212672
-
Carbohydrate-active enzymes exemplify entropic principles in metabolism
-
Kartal O, Mahlow S, Skupin A, Ebenhöh O, (2011) Carbohydrate-active enzymes exemplify entropic principles in metabolism. Mol Syst Biol 7: 542.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 542
-
-
Kartal, O.1
Mahlow, S.2
Skupin, A.3
Ebenhöh, O.4
-
45
-
-
0031754915
-
The general stress sigma factor σS of Escherichia coli is induced during diauxic shift from glucose to lactose
-
Fischer D, Teich A, Neubauer P, Hengge-Aronis R, (1998) The general stress sigma factor σS of Escherichia coli is induced during diauxic shift from glucose to lactose. J Bacteriol 180: 6203-6206.
-
(1998)
J Bacteriol
, vol.180
, pp. 6203-6206
-
-
Fischer, D.1
Teich, A.2
Neubauer, P.3
Hengge-Aronis, R.4
-
46
-
-
0036069537
-
Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model
-
Chang DE, Smalley DJ, Conway T, (2002) Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. Mol Microbiol 45: 289-306.
-
(2002)
Mol Microbiol
, vol.45
, pp. 289-306
-
-
Chang, D.E.1
Smalley, D.J.2
Conway, T.3
-
47
-
-
25444489027
-
Phenotypic diversity, population growth, and information in fluctuating environments
-
Kussell E, Leibler S, (2005) Phenotypic diversity, population growth, and information in fluctuating environments. Science 309: 2075-2078.
-
(2005)
Science
, vol.309
, pp. 2075-2078
-
-
Kussell, E.1
Leibler, S.2
-
48
-
-
0029973636
-
FACS-optimized mutants of the green fluorescent protein (GFP)
-
Cormack BP, Valdivia RH, Falkow S, (1996) FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173: 33-38.
-
(1996)
Gene
, vol.173
, pp. 33-38
-
-
Cormack, B.P.1
Valdivia, R.H.2
Falkow, S.3
-
49
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 6640-6645.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
|