-
1
-
-
0025681492
-
Binding of SH2 domains of phospholipase C gamma 1, GAP, and Src to activated growth factor receptors
-
Anderson D., Koch C.A., Grey L., Ellis C., Moran M.F., Pawson T. Binding of SH2 domains of phospholipase C gamma 1, GAP, and Src to activated growth factor receptors. Science 1990, 250:979-982.
-
(1990)
Science
, vol.250
, pp. 979-982
-
-
Anderson, D.1
Koch, C.A.2
Grey, L.3
Ellis, C.4
Moran, M.F.5
Pawson, T.6
-
2
-
-
4444371652
-
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
-
Blagoev B., Ong S.-E., Kratchmarova I., Mann M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 2004, 22:1139-1145.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1139-1145
-
-
Blagoev, B.1
Ong, S.-E.2
Kratchmarova, I.3
Mann, M.4
-
3
-
-
0033579464
-
Sequence and structure-based prediction of eukaryotic protein phosphorylation sites
-
Blom N., Gammeltoft S., Brunak S. Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol. 1999, 294:1351-1362.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1351-1362
-
-
Blom, N.1
Gammeltoft, S.2
Brunak, S.3
-
4
-
-
77954306342
-
Multi-Harmony: detecting functional specificity from sequence alignment
-
W35-40
-
Brandt B.W., Feenstra K.A., Heringa J. Multi-Harmony: detecting functional specificity from sequence alignment. Nucleic Acids Res. 2010, 38(Web Server issue). W35-40.
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.WEB SERVER ISSUE
-
-
Brandt, B.W.1
Feenstra, K.A.2
Heringa, J.3
-
5
-
-
75549083295
-
MINT, the molecular interaction database: 2009 update
-
Ceol A., Chatr Aryamontri A., Licata L., Peluso D., Briganti L., Perfetto L., Castagnoli L., Cesareni G. MINT, the molecular interaction database: 2009 update. Nucleic Acids Res. 2010, 38(Database issue):D532-D539.
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.DATABASE ISSUE
-
-
Ceol, A.1
Chatr Aryamontri, A.2
Licata, L.3
Peluso, D.4
Briganti, L.5
Perfetto, L.6
Castagnoli, L.7
Cesareni, G.8
-
6
-
-
33846073818
-
MINT: the Molecular INTeraction database
-
Chatr-Aryamontri A., Ceol A., Palazzi L.M., Nardelli G., Schneider M.V., Castagnoli L., Cesareni G. MINT: the Molecular INTeraction database. Nucleic Acids Res. 2007, 35(Database issue):D572-D574.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.DATABASE ISSUE
-
-
Chatr-Aryamontri, A.1
Ceol, A.2
Palazzi, L.M.3
Nardelli, G.4
Schneider, M.V.5
Castagnoli, L.6
Cesareni, G.7
-
7
-
-
44749093999
-
Protein interactions: integration leads to belief
-
author reply 242-243
-
Chatr-Aryamontri A., Ceol A., Licata L., Cesareni G. Protein interactions: integration leads to belief. Trends Biochem. Sci. 2008, 33:241-242. author reply 242-243.
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 241-242
-
-
Chatr-Aryamontri, A.1
Ceol, A.2
Licata, L.3
Cesareni, G.4
-
8
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox J., Mann M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26:1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
9
-
-
38549092088
-
Phospho.ELM: a database of phosphorylation sites-update 2008
-
Diella F., Gould C.M., Chica C., Via A., Gibson T.J. Phospho.ELM: a database of phosphorylation sites-update 2008. Nucleic Acids Res. 2008, 36(Database issue):D240-D244.
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.DATABASE ISSUE
-
-
Diella, F.1
Gould, C.M.2
Chica, C.3
Via, A.4
Gibson, T.J.5
-
10
-
-
24044538903
-
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztányi Z., Csizmok V., Tompa P., Simon I. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 2005, 21:3433-3434.
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
11
-
-
77949772254
-
Rapid evolution of functional complexity in a domain family
-
Ernst A., Sazinsky S.L., Hui S., Currell B., Dharsee M., Seshagiri S., Bader G.D., Sidhu S.S. Rapid evolution of functional complexity in a domain family. Sci. Signal. 2009, 2:ra50.
-
(2009)
Sci. Signal.
, vol.2
-
-
Ernst, A.1
Sazinsky, S.L.2
Hui, S.3
Currell, B.4
Dharsee, M.5
Seshagiri, S.6
Bader, G.D.7
Sidhu, S.S.8
-
12
-
-
84858221706
-
Ensembl 2012
-
Flicek P., Amode M.R., Barrell D., Beal K., Brent S., Chen Y., Clapham P., Coates G., Fairley S., Fitzgerald S., et al. Ensembl 2012. Nucleic Acids Res. 2012, 40:D222-D229.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Chen, Y.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
-
13
-
-
0026656122
-
Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support
-
Frank R. Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support. Tetrahedron 1992, 48:9217-9232.
-
(1992)
Tetrahedron
, vol.48
, pp. 9217-9232
-
-
Frank, R.1
-
14
-
-
79955569676
-
The multiple-specificity landscape of modular peptide recognition domains
-
Gfeller D., Butty F., Wierzbicka M., Verschueren E., Vanhee P., Huang H., Ernst A., Dar N., Stagljar I., Serrano L., et al. The multiple-specificity landscape of modular peptide recognition domains. Mol. Syst. Biol. 2011, 7:484.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 484
-
-
Gfeller, D.1
Butty, F.2
Wierzbicka, M.3
Verschueren, E.4
Vanhee, P.5
Huang, H.6
Ernst, A.7
Dar, N.8
Stagljar, I.9
Serrano, L.10
-
15
-
-
38549086310
-
PepCyber:P∼PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains
-
Gong W., Zhou D., Ren Y., Wang Y., Zuo Z., Shen Y., Xiao F., Zhu Q., Hong A., Zhou X., et al. PepCyber:P∼PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains. Nucleic Acids Res. 2008, 36(Database issue):D679-D683.
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.DATABASE ISSUE
-
-
Gong, W.1
Zhou, D.2
Ren, Y.3
Wang, Y.4
Zuo, Z.5
Shen, Y.6
Xiao, F.7
Zhu, Q.8
Hong, A.9
Zhou, X.10
-
16
-
-
63049091804
-
The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2
-
Hanke S., Mann M. The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2. Mol. Cell. Proteomics 2009, 8:519-534.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 519-534
-
-
Hanke, S.1
Mann, M.2
-
17
-
-
0742323374
-
The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data
-
Hermjakob H., Montecchi-Palazzi L., Bader G., Wojcik J., Salwinski L., Ceol A., Moore S., Orchard S., Sarkans U., von Mering C., et al. The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data. Nat. Biotechnol. 2004, 22:177-183.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
von Mering, C.10
-
18
-
-
0030028790
-
A Grb2-associated docking protein in EGF- and insulin-receptor signalling
-
Holgado-Madruga M., Emlet D.R., Moscatello D.K., Godwin A.K., Wong A.J. A Grb2-associated docking protein in EGF- and insulin-receptor signalling. Nature 1996, 379:560-564.
-
(1996)
Nature
, vol.379
, pp. 560-564
-
-
Holgado-Madruga, M.1
Emlet, D.R.2
Moscatello, D.K.3
Godwin, A.K.4
Wong, A.J.5
-
19
-
-
2942598149
-
PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation
-
Hornbeck P.V., Chabra I., Kornhauser J.M., Skrzypek E., Zhang B. PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 2004, 4:1551-1561.
-
(2004)
Proteomics
, vol.4
, pp. 1551-1561
-
-
Hornbeck, P.V.1
Chabra, I.2
Kornhauser, J.M.3
Skrzypek, E.4
Zhang, B.5
-
20
-
-
42649123723
-
Defining the specificity space of the human SRC homology 2 domain
-
Huang H., Li L., Wu C., Schibli D., Colwill K., Ma S., Li C., Roy P., Ho K., Songyang Z., et al. Defining the specificity space of the human SRC homology 2 domain. Mol. Cell. Proteomics 2008, 7:768-784.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 768-784
-
-
Huang, H.1
Li, L.2
Wu, C.3
Schibli, D.4
Colwill, K.5
Ma, S.6
Li, C.7
Roy, P.8
Ho, K.9
Songyang, Z.10
-
21
-
-
30544449081
-
A quantitative protein interaction network for the ErbB receptors using protein microarrays
-
Jones R.B., Gordus A., Krall J.A., MacBeath G. A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature 2006, 439:168-174.
-
(2006)
Nature
, vol.439
, pp. 168-174
-
-
Jones, R.B.1
Gordus, A.2
Krall, J.A.3
MacBeath, G.4
-
22
-
-
34548863332
-
Comparative interactomics: comparing apples and pears?
-
Kiemer L., Cesareni G. Comparative interactomics: comparing apples and pears?. Trends Biotechnol. 2007, 25:448-454.
-
(2007)
Trends Biotechnol.
, vol.25
, pp. 448-454
-
-
Kiemer, L.1
Cesareni, G.2
-
23
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W., Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22:1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
24
-
-
84860918589
-
MINT, the molecular interaction database: 2012 update
-
Licata L., Briganti L., Peluso D., Perfetto L., Iannuccelli M., Galeota E., Sacco F., Palma A., Nardozza A.P., Santonico E., et al. MINT, the molecular interaction database: 2012 update. Nucleic Acids Res. 2012, 40(Database issue):D857-D861.
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.DATABASE ISSUE
-
-
Licata, L.1
Briganti, L.2
Peluso, D.3
Perfetto, L.4
Iannuccelli, M.5
Galeota, E.6
Sacco, F.7
Palma, A.8
Nardozza, A.P.9
Santonico, E.10
-
25
-
-
34250743173
-
Systematic discovery of in vivo phosphorylation networks
-
Linding R., Jensen L.J., Ostheimer G.J., van Vugt M.A., Jørgensen C., Miron I.M., Diella F., Colwill K., Taylor L., Elder K., et al. Systematic discovery of in vivo phosphorylation networks. Cell 2007, 129:1415-1426.
-
(2007)
Cell
, vol.129
, pp. 1415-1426
-
-
Linding, R.1
Jensen, L.J.2
Ostheimer, G.J.3
van Vugt, M.A.4
Jørgensen, C.5
Miron, I.M.6
Diella, F.7
Colwill, K.8
Taylor, L.9
Elder, K.10
-
26
-
-
33745185987
-
The human and mouse complement of SH2 domain proteins-establishing the boundaries of phosphotyrosine signaling
-
Liu B.A., Jablonowski K., Raina M., Arcé M., Pawson T., Nash P.D. The human and mouse complement of SH2 domain proteins-establishing the boundaries of phosphotyrosine signaling. Mol. Cell 2006, 22:851-868.
-
(2006)
Mol. Cell
, vol.22
, pp. 851-868
-
-
Liu, B.A.1
Jablonowski, K.2
Raina, M.3
Arcé, M.4
Pawson, T.5
Nash, P.D.6
-
27
-
-
78149333493
-
SH2 domains recognize contextual peptide sequence information to determine selectivity
-
Liu B.A., Jablonowski K., Shah E.E., Engelmann B.W., Jones R.B., Nash P.D. SH2 domains recognize contextual peptide sequence information to determine selectivity. Mol. Cell. Proteomics 2010, 9:2391-2404.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2391-2404
-
-
Liu, B.A.1
Jablonowski, K.2
Shah, E.E.3
Engelmann, B.W.4
Jones, R.B.5
Nash, P.D.6
-
28
-
-
34250641161
-
High-throughput phosphotyrosine profiling using SH2 domains
-
Machida K., Thompson C.M., Dierck K., Jablonowski K., Kärkkäinen S., Liu B., Zhang H., Nash P.D., Newman D.K., Nollau P., et al. High-throughput phosphotyrosine profiling using SH2 domains. Mol. Cell 2007, 26:899-915.
-
(2007)
Mol. Cell
, vol.26
, pp. 899-915
-
-
Machida, K.1
Thompson, C.M.2
Dierck, K.3
Jablonowski, K.4
Kärkkäinen, S.5
Liu, B.6
Zhang, H.7
Nash, P.D.8
Newman, D.K.9
Nollau, P.10
-
29
-
-
0028346469
-
SH2 domain specificity and activity modified by a single residue
-
Marengere L.E., Songyang Z., Gish G.D., Schaller M.D., Parsons J.T., Stern M.J., Cantley L.C., Pawson T. SH2 domain specificity and activity modified by a single residue. Nature 1994, 369:502-505.
-
(1994)
Nature
, vol.369
, pp. 502-505
-
-
Marengere, L.E.1
Songyang, Z.2
Gish, G.D.3
Schaller, M.D.4
Parsons, J.T.5
Stern, M.J.6
Cantley, L.C.7
Pawson, T.8
-
30
-
-
55749111058
-
Linear motif atlas for phosphorylation-dependent signaling
-
Miller M.L., Jensen L.J., Diella F., Jørgensen C., Tinti M., Li L., Hsiung M., Parker S.A., Bordeaux J., Sicheritz-Ponten T., et al. Linear motif atlas for phosphorylation-dependent signaling. Sci. Signal. 2008, 1:ra2.
-
(2008)
Sci. Signal.
, vol.1
-
-
Miller, M.L.1
Jensen, L.J.2
Diella, F.3
Jørgensen, C.4
Tinti, M.5
Li, L.6
Hsiung, M.7
Parker, S.A.8
Bordeaux, J.9
Sicheritz-Ponten, T.10
-
31
-
-
0025119824
-
Src homology region 2 domains direct protein-protein interactions in signal transduction
-
Moran M.F., Koch C.A., Anderson D., Ellis C., England L., Martin G.S., Pawson T. Src homology region 2 domains direct protein-protein interactions in signal transduction. Proc. Natl. Acad. Sci. USA 1990, 87:8622-8626.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 8622-8626
-
-
Moran, M.F.1
Koch, C.A.2
Anderson, D.3
Ellis, C.4
England, L.5
Martin, G.S.6
Pawson, T.7
-
32
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
Nielsen M., Lundegaard C., Worning P., Lauemøller S.L., Lamberth K., Buus S., Brunak S., Lund O. Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci. 2003, 12:1007-1017.
-
(2003)
Protein Sci.
, vol.12
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemøller, S.L.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
33
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127:635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
34
-
-
0037077294
-
In vitro evolution of recognition specificity mediated by SH3 domains reveals target recognition rules
-
Panni S., Dente L., Cesareni G. In vitro evolution of recognition specificity mediated by SH3 domains reveals target recognition rules. J. Biol. Chem. 2002, 277:21666-21674.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 21666-21674
-
-
Panni, S.1
Dente, L.2
Cesareni, G.3
-
35
-
-
0842346438
-
Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems
-
Pawson T. Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems. Cell 2004, 116:191-203.
-
(2004)
Cell
, vol.116
, pp. 191-203
-
-
Pawson, T.1
-
36
-
-
33947312507
-
HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms
-
Persico M., Ceol A., Gavrila C., Hoffmann R., Florio A., Cesareni G. HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms. BMC Bioinformatics 2005, 6(Suppl 4):S21.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL 4
-
-
Persico, M.1
Ceol, A.2
Gavrila, C.3
Hoffmann, R.4
Florio, A.5
Cesareni, G.6
-
38
-
-
33746905531
-
Phosphotyrosine interactome of the ErbB-receptor kinase family
-
Schulze W.X., Deng L., Mann M. Phosphotyrosine interactome of the ErbB-receptor kinase family. Mol. Syst. Biol. 2005, 1:2005.0008.
-
(2005)
Mol. Syst. Biol.
, vol.1
-
-
Schulze, W.X.1
Deng, L.2
Mann, M.3
-
39
-
-
0027403027
-
SH2 domains recognize specific phosphopeptide sequences
-
Songyang Z., Shoelson S.E., Chaudhuri M., Gish G., Pawson T., Haser W.G., King F., Roberts T., Ratnofsky S., Lechleider R.J., et al. SH2 domains recognize specific phosphopeptide sequences. Cell 1993, 72:767-778.
-
(1993)
Cell
, vol.72
, pp. 767-778
-
-
Songyang, Z.1
Shoelson, S.E.2
Chaudhuri, M.3
Gish, G.4
Pawson, T.5
Haser, W.G.6
King, F.7
Roberts, T.8
Ratnofsky, S.9
Lechleider, R.J.10
-
40
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su A.I., Wiltshire T., Batalov S., Lapp H., Ching K.A., Block D., Zhang J., Soden R., Hayakawa M., Kreiman G., et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl. Acad. Sci. USA 2004, 101:6062-6067.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
-
41
-
-
34250191844
-
Reactome: a knowledge base of biologic pathways and processes
-
Vastrik I., D'Eustachio P., Schmidt E., Gopinath G., Croft D., de Bono B., Gillespie M., Jassal B., Lewis S., Matthews L., et al. Reactome: a knowledge base of biologic pathways and processes. Genome Biol. 2007, 8:R39.
-
(2007)
Genome Biol.
, vol.8
-
-
Vastrik, I.1
D'Eustachio, P.2
Schmidt, E.3
Gopinath, G.4
Croft, D.5
de Bono, B.6
Gillespie, M.7
Jassal, B.8
Lewis, S.9
Matthews, L.10
-
42
-
-
0033635297
-
Coherent membrane supports for parallel microsynthesis and screening of bioactive peptides
-
Wenschuh H., Volkmer-Engert R., Schmidt M., Schulz M., Schneider-Mergener J., Reineke U. Coherent membrane supports for parallel microsynthesis and screening of bioactive peptides. Biopolymers 2000, 55:188-206.
-
(2000)
Biopolymers
, vol.55
, pp. 188-206
-
-
Wenschuh, H.1
Volkmer-Engert, R.2
Schmidt, M.3
Schulz, M.4
Schneider-Mergener, J.5
Reineke, U.6
-
43
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
WiŚniewski J.R., Zougman A., Nagaraj N., Mann M. Universal sample preparation method for proteome analysis. Nat. Methods 2009, 6:359-362.
-
(2009)
Nat. Methods
, vol.6
, pp. 359-362
-
-
Wiśniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
44
-
-
0036518996
-
Phosphotyrosine-binding domains in signal transduction
-
Yaffe M.B. Phosphotyrosine-binding domains in signal transduction. Nat. Rev. Mol. Cell Biol. 2002, 3:177-186.
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 177-186
-
-
Yaffe, M.B.1
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