메뉴 건너뛰기




Volumn 8, Issue 4, 2013, Pages

Regulation of Programmed Ribosomal Frameshifting by Co-Translational Refolding RNA Hairpins

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BASE PAIRING; CONTROLLED STUDY; DOWN REGULATION; EMBRYO; HUMAN; HUMAN CELL; IN VITRO STUDY; NONHUMAN; RIBOSOMAL FRAMESHIFTING; RIBOSOME; RNA FOLDING; RNA HAIRPIN; RNA STRUCTURE; RNA TRANSLATION; SARS CORONAVIRUS; YEAST; CHEMISTRY; GENETICS; INVERTED REPEAT; NUCLEOTIDE MOTIF; NUCLEOTIDE SEQUENCE; RNA STABILITY; SACCHAROMYCES CEREVISIAE;

EID: 84876949005     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0062283     Document Type: Article
Times cited : (35)

References (32)
  • 1
    • 11844292767 scopus 로고    scopus 로고
    • mRNA helicase activity of the ribosome
    • Takyar S, Hickerson R P, Noller HF, (2005) mRNA helicase activity of the ribosome. Cell 120: 49-58.
    • (2005) Cell , vol.120 , pp. 49-58
    • Takyar, S.1    Hickerson, R.P.2    Noller, H.F.3
  • 2
    • 79959676389 scopus 로고    scopus 로고
    • The ribosome uses two active mechanisms to unwind messenger RNA during translation
    • Qu X, Wen JD, Lancaster L, Noller HF, Bustamante C, et al. (2011) The ribosome uses two active mechanisms to unwind messenger RNA during translation. Nature 475: 118-121.
    • (2011) Nature , vol.475 , pp. 118-121
    • Qu, X.1    Wen, J.D.2    Lancaster, L.3    Noller, H.F.4    Bustamante, C.5
  • 3
    • 0036534459 scopus 로고    scopus 로고
    • Ribosome structure: revesting the connection between translational accuracy and uncovential decoding
    • Stahl G, McCarty GP, Farabaugh PJ, (2002) Ribosome structure: revesting the connection between translational accuracy and uncovential decoding. Trends Biochem. Sci. 27: 178-183.
    • (2002) Trends Biochem. Sci , vol.27 , pp. 178-183
    • Stahl, G.1    McCarty, G.P.2    Farabaugh, P.J.3
  • 4
    • 34548446795 scopus 로고    scopus 로고
    • Halting a cellular production line: responses to ribosomal pausing during translation
    • Buchan JR, Stansfield I, (2007) Halting a cellular production line: responses to ribosomal pausing during translation. Biol. Cell 99: 475-487.
    • (2007) Biol. Cell , vol.99 , pp. 475-487
    • Buchan, J.R.1    Stansfield, I.2
  • 5
    • 0029870925 scopus 로고    scopus 로고
    • Programmed translational frameshifting
    • Farabaugh P J, (1996) Programmed translational frameshifting. Microbiol. Rev. 60: 103-134.
    • (1996) Microbiol. Rev , vol.60 , pp. 103-134
    • Farabaugh, P.J.1
  • 6
    • 0026598965 scopus 로고
    • An RNA pseudoknot and an optimal heptameric site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA
    • Chamorro M, Parkin N, Varmus HE, (1992) An RNA pseudoknot and an optimal heptameric site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA. Proc. Natl. Acad. Sci. USA 89: 713-717.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 713-717
    • Chamorro, M.1    Parkin, N.2    Varmus, H.E.3
  • 7
    • 59749098821 scopus 로고    scopus 로고
    • Frameshifting RNA pseudoknots: Structure and mechanism
    • Giedroc DP, Cornish PV, (2009) Frameshifting RNA pseudoknots: Structure and mechanism. Virus Res. 139: 193-208.
    • (2009) Virus Res , vol.139 , pp. 193-208
    • Giedroc, D.P.1    Cornish, P.V.2
  • 8
    • 0037316485 scopus 로고    scopus 로고
    • The 9-Å solution: How mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting
    • Plant EP, Muldoon Jacobs KL, Harger JW, Meskauskas A, Jacobs JL, et al. (2003) The 9-Å solution: How mRNA pseudoknots promote efficient programmed-1 ribosomal frameshifting. RNA 9: 168-174.
    • (2003) RNA , vol.9 , pp. 168-174
    • Plant, E.P.1    Muldoon Jacobs, K.L.2    Harger, J.W.3    Meskauskas, A.4    Jacobs, J.L.5
  • 9
    • 1642540279 scopus 로고    scopus 로고
    • P-site tRNA is a crucial initiator of ribosomal frameshifting
    • Baranov PV, Gesteland RF, Atkins JF, (2004) P-site tRNA is a crucial initiator of ribosomal frameshifting. RNA 10: 221-230.
    • (2004) RNA , vol.10 , pp. 221-230
    • Baranov, P.V.1    Gesteland, R.F.2    Atkins, J.F.3
  • 10
    • 33646557329 scopus 로고    scopus 로고
    • A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting
    • Namy O, Moran SJ, Stuart DI, Gilbert RJC, Brierley I, (2006) A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. Nature 441: 244-247.
    • (2006) Nature , vol.441 , pp. 244-247
    • Namy, O.1    Moran, S.J.2    Stuart, D.I.3    Gilbert, R.J.C.4    Brierley, I.5
  • 11
    • 0028007434 scopus 로고
    • rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift
    • Larsen B, Wills NM, Gesteland RF, Atkins JF, (1994) rRNA-mRNA base pairing stimulates a programmed-1 ribosomal frameshift. J. Bacteriol. 176: 6842-6851.
    • (1994) J. Bacteriol , vol.176 , pp. 6842-6851
    • Larsen, B.1    Wills, N.M.2    Gesteland, R.F.3    Atkins, J.F.4
  • 12
    • 0035282697 scopus 로고    scopus 로고
    • Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2
    • Kim YG, Maas S, Rich A, (2001) Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2. Nucleic Acids Res. 29: 1125-1131.
    • (2001) Nucleic Acids Res , vol.29 , pp. 1125-1131
    • Kim, Y.G.1    Maas, S.2    Rich, A.3
  • 13
    • 34548768192 scopus 로고    scopus 로고
    • The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift
    • Léger M, Dulude D, Steinberg SV, Brakier-Gingras L, (2007) The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed-1 ribosomal frameshift. Nucleic Acids Res. 35: 5581-5592.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5581-5592
    • Léger, M.1    Dulude, D.2    Steinberg, S.V.3    Brakier-Gingras, L.4
  • 14
    • 23044450885 scopus 로고    scopus 로고
    • An atypical RNA pseudoknot stimulator and an upstream attenuation signal for -1 ribosomal frameshifting of SARS coronavirus
    • Su MC, Chang CT, Chu CH, Tsai CH, Chang KY, (2005) An atypical RNA pseudoknot stimulator and an upstream attenuation signal for-1 ribosomal frameshifting of SARS coronavirus. Nucleic Acids Res. 33: 4265-4275.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4265-4275
    • Su, M.C.1    Chang, C.T.2    Chu, C.H.3    Tsai, C.H.4    Chang, K.Y.5
  • 15
    • 77950809174 scopus 로고    scopus 로고
    • Achieving a golden mean: Mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins
    • Plant EP, Rakauskaité R, Taylor DR, Dinman JD, (2010) Achieving a golden mean: Mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins. J. Virol. 84: 4330-4340.
    • (2010) J. Virol , vol.84 , pp. 4330-4340
    • Plant, E.P.1    Rakauskaité, R.2    Taylor, D.R.3    Dinman, J.D.4
  • 16
    • 0031901133 scopus 로고    scopus 로고
    • Importance of ribosomal frameshifting for human immunodeficiency virus type I particle assembly and replication
    • Hung M, Patel P, Davis S, Green SR, (1998) Importance of ribosomal frameshifting for human immunodeficiency virus type I particle assembly and replication. J. Virol. 72: 4819-4824.
    • (1998) J. Virol , vol.72 , pp. 4819-4824
    • Hung, M.1    Patel, P.2    Davis, S.3    Green, S.R.4
  • 17
    • 77951974177 scopus 로고    scopus 로고
    • Structural aspects of messenger RNA reading frame maintenance by the ribosome
    • Jenner LB, Demeshkina N, Yusupova G, Yusupov M, (2010) Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nat. Struct. Mol. Biol. 17: 555-560.
    • (2010) Nat. Struct. Mol. Biol , vol.17 , pp. 555-560
    • Jenner, L.B.1    Demeshkina, N.2    Yusupova, G.3    Yusupov, M.4
  • 18
    • 3142562521 scopus 로고    scopus 로고
    • Maintaining the ribosomal reading frame: The influence of the E site during translational regulation of release factor 2
    • Márquez V, Wilson DN, Tate WP, Triana-Alonso F, Nierhaus KH, (2004) Maintaining the ribosomal reading frame: The influence of the E site during translational regulation of release factor 2. Cell 118: 45-55.
    • (2004) Cell , vol.118 , pp. 45-55
    • Márquez, V.1    Wilson, D.N.2    Tate, W.P.3    Triana-Alonso, F.4    Nierhaus, K.H.5
  • 19
    • 77950496505 scopus 로고    scopus 로고
    • An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of -1 ribosomal frameshifting
    • Chou MY, Chang KY, (2010) An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of-1 ribosomal frameshifting. Nucleic Acids Res. 38: 1676-1685.
    • (2010) Nucleic Acids Res , vol.38 , pp. 1676-1685
    • Chou, M.Y.1    Chang, K.Y.2
  • 20
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 21
    • 0025303605 scopus 로고
    • Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site
    • Belcourt MF, Farabaugh PJ, (1990) Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site. Cell 62: 339-352.
    • (1990) Cell , vol.62 , pp. 339-352
    • Belcourt, M.F.1    Farabaugh, P.J.2
  • 22
    • 34548346899 scopus 로고    scopus 로고
    • Genetic analysis of the E site during RF2 programmed frameshifting
    • Sanders CL, Curran JF, (2007) Genetic analysis of the E site during RF2 programmed frameshifting. RNA 13: 1483-1491.
    • (2007) RNA , vol.13 , pp. 1483-1491
    • Sanders, C.L.1    Curran, J.F.2
  • 23
    • 0014666439 scopus 로고
    • Polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA
    • Steitz JA, (1969) Polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA. Nature 224: 957-964.
    • (1969) Nature , vol.224 , pp. 957-964
    • Steitz, J.A.1
  • 24
    • 4644247805 scopus 로고    scopus 로고
    • Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosome: the IRES functions as an RNA-based translational factor
    • Spahn CMT, Jan E, Mulder A, Grassucci RA, Sarnow P, et al. (2004) Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosome: the IRES functions as an RNA-based translational factor. Cell 118: 465-475.
    • (2004) Cell , vol.118 , pp. 465-475
    • Spahn, C.M.T.1    Jan, E.2    Mulder, A.3    Grassucci, R.A.4    Sarnow, P.5
  • 26
    • 33751103912 scopus 로고    scopus 로고
    • Structural basis for messenger RNA movement on the ribosome
    • Yusupova GZ, Jenner L, Rees B, Moras D, Yusupov M, (2006) Structural basis for messenger RNA movement on the ribosome. Nature 444: 391-394.
    • (2006) Nature , vol.444 , pp. 391-394
    • Yusupova, G.Z.1    Jenner, L.2    Rees, B.3    Moras, D.4    Yusupov, M.5
  • 27
    • 40749096382 scopus 로고    scopus 로고
    • Applied force reveals mechanistic and energetic details of transcription termination
    • Larson MH, Greenleaf WJ, Landick R, Block S, (2008) Applied force reveals mechanistic and energetic details of transcription termination. Cell 132: 971-982.
    • (2008) Cell , vol.132 , pp. 971-982
    • Larson, M.H.1    Greenleaf, W.J.2    Landick, R.3    Block, S.4
  • 28
    • 77956306662 scopus 로고    scopus 로고
    • Genome-wide measurement of RNA secondary structure in yeast
    • Kertesz M, Wan Y, Mazor E, Rinn JL, Nutter RC, et al. (2010) Genome-wide measurement of RNA secondary structure in yeast. Nature 467: 103-107.
    • (2010) Nature , vol.467 , pp. 103-107
    • Kertesz, M.1    Wan, Y.2    Mazor, E.3    Rinn, J.L.4    Nutter, R.C.5
  • 30
    • 0042703890 scopus 로고    scopus 로고
    • An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae
    • Harger JW, Dinman JD, (2003) An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae. RNA 9: 1019-1024.
    • (2003) RNA , vol.9 , pp. 1019-1024
    • Harger, J.W.1    Dinman, J.D.2
  • 32


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.