Interplay between BDF1 and BDF2 and their roles in regulating the yeast salt stress response

FEBS Journal

Volumn 280, Issue 9, 2013, Pages 1991-2001

  Fu, Jiafang ^a   Hou, Jin ^a   Liu, Liangyu ^a   Chen, Lei ^a   Wang, Mingpeng ^a   Shen, Yu ^a   Zhang, Zhaojie ^b   Bao, Xiaoming ^a  

^a SHANDONG UNIVERSITY   (China)

^b UNIVERSITY OF WYOMING   (United States)

Author keywords

bromodomain transcription factor; budding yeast; homologous genes; physical interaction; salt stress response

Indexed keywords

MUTANT PROTEIN; PROTEIN BDF1P; SACCHAROMYCES CEREVISIAE PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BDF1 GENE; BDF2 GENE; CONTROLLED STUDY; DISORDERS OF MITOCHONDRIAL FUNCTIONS; DNA BINDING; FUNGAL GENE; GENE DELETION; GENE DOSAGE; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE INTERACTION; GENE LOCUS; GENE OVEREXPRESSION; NONHUMAN; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; PROTEIN FUNCTION; REGULATORY MECHANISM; SACCHAROMYCES CEREVISIAE; SALT STRESS; SALT TOLERANCE; SENSITIVITY ANALYSIS;

APOPTOSIS; BASE SEQUENCE; CELL NUCLEUS; DOSAGE COMPENSATION, GENETIC; GENE EXPRESSION REGULATION, FUNGAL; GENE KNOCKOUT TECHNIQUES; MICROBIAL VIABILITY; MITOCHONDRIA; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SALT-TOLERANCE; STRESS, PHYSIOLOGICAL; TATA BOX; TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

EID: 84876938157     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.12219     Document Type: Article

References (32)

1. Horn PJ, &, Peterson CL, (2001) The bromodomain: a regulator of ATP-dependent chromatin remodeling? Front Biosci 6, D1019-D1023.
2. Jacobson RH, Ladurner AG, King DS, &, Tjian R, (2000) Structure and function of a human TAFII250 double bromodomain module. Science 288, 1422-1425. (Pubitemid 30366328)
3. Grant PA, Duggan L, Cote J, Roberts SM, Brownell JE, Candau R, Ohba R, Owen-Hughes T, Allis CD, Winston F, et al,. (1997) Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex. Genes Dev 11, 1640-1650. (Pubitemid 27300590)
4. Mizzen CA, Yang XJ, Kokubo T, Brownell JE, Bannister AJ, Owen-Hughes T, Workman J, Wang L, Berger SL, Kouzarides T, et al,. (1996) The TAF(II)250 subunit of TFIID has histone acetyltransferase activity. Cell 87, 1261-1270. (Pubitemid 27010109)
5. Huisinga KL, &, Pugh BF, (2004) A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol Cell 13, 573-585. (Pubitemid 38299384)
6. Lygerou Z, Conesa C, Lesage P, Swanson RN, Ruet A, Carlson M, Sentenac A, &, Seraphin B, (1994) The yeast BDF1 gene encodes a transcription factor involved in the expression of a broad class of genes including snRNAs. Nucleic Acids Res 22, 5332-5340.
7. Matangkasombut O, Buratowski RM, Swilling NW, &, Buratowski S, (2000) Bromodomain factor 1 corresponds to a missing piece of yeast TFIID. Genes Dev 14, 951-962. (Pubitemid 30253004)
8. Bao Y, &, Shen X, (2011) SnapShot: chromatin remodeling: INO80 and SWR1. Cell 144, 158-158.e2.
9. Mizuguchi G, Shen X, Landry J, Wu WH, Sen S, &, Wu C, (2004) ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303, 343-348. (Pubitemid 38095768)
10. Durant M, &, Pugh BF, (2007) NuA4-directed chromatin transactions throughout the Saccharomyces cerevisiae genome. Mol Cell Biol 27, 5327-5335. (Pubitemid 47124388)
11. Ladurner AG, Inouye C, Jain R, &, Tjian R, (2003) Bromodomains mediate an acetyl-histone encoded antisilencing function at heterochromatin boundaries. Mol Cell 11, 365-376. (Pubitemid 36293831)
12. Matangkasombut O, &, Buratowski S, (2003) Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation. Mol Cell 11, 353-363. (Pubitemid 36293830)
13. Bianchi MM, Costanzo G, Chelstowska A, Grabowska D, Mazzoni C, Piccinni E, Cavalli A, Ciceroni F, Rytka J, Slonimski PP, et al,. (2004) The bromodomain-containing protein Bdf1p acts as a phenotypic and transcriptional multicopy suppressor of YAF9 deletion in yeast. Mol Microbiol 53, 953-968. (Pubitemid 39036972)
14. Sawa C, Nedea E, Krogan N, Wada T, Handa H, Greenblatt J, &, Buratowski S, (2004) Bromodomain factor 1 (Bdf1) is phosphorylated by protein kinase CK2. Mol Cell Biol 24, 4734-4742. (Pubitemid 38668040)
15. Liu X, Zhang X, Wang C, Liu L, Lei M, &, Bao X, (2007) Genetic and comparative transcriptome analysis of bromodomain factor 1 in the salt stress response of Saccharomyces cerevisiae. Curr Microbiol 54, 325-330. (Pubitemid 46452248)
16. Zhang Q, Chakravarty S, Ghersi D, Zeng L, Plotnikov AN, Sanchez R, &, Zhou MM, (2010) Biochemical profiling of histone binding selectivity of the yeast bromodomain family. PLoS One 5, e8903.
17. de Jesus Ferreira MC, Bao X, Laize V, &, Hohmann S, (2001) Transposon mutagenesis reveals novel loci affecting tolerance to salt stress and growth at low temperature. Curr Genet 40, 27-39. (Pubitemid 32816097)
18. Liu X, Yang H, Zhang X, Liu L, Lei M, Zhang Z, &, Bao X, (2009) Bdf1p deletion affects mitochondrial function and causes apoptotic cell death under salt stress. FEMS Yeast Res 9, 240-246.
19. Shiratori A, Shibata T, Arisawa M, Hanaoka F, Murakami Y, &, Eki T, (1999) Systematic identification, classification, and characterization of the open reading frames which encode novel helicase-related proteins in Saccharomyces cerevisiae by gene disruption and Northern analysis. Yeast 15, 219-253. (Pubitemid 29083957)
20. Liang Q, &, Zhou B, (2007) Copper and manganese induce yeast apoptosis via different pathways. Mol Biol Cell 18, 4741-4749. (Pubitemid 350246677)
21. Perelman A, Wachtel C, Cohen M, Haupt S, Shapiro H, &, Tzur A, (2012) JC-1: alternative excitation wavelengths facilitate mitochondrial membrane potential cytometry. Cell Death Dis 3, e430, doi: 10.1038/cddis.2012.171.
22. Bhaumik SR, &, Green MR, (2001) SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev 15, 1935-1945. (Pubitemid 32738623)
23. Larschan E, &, Winston F, (2001) The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. Genes Dev 15, 1946-1956. (Pubitemid 32738624)
24. Zanton SJ, &, Pugh BF, (2004) Changes in genomewide occupancy of core transcriptional regulators during heat stress. Proc Natl Acad Sci USA 101, 16843-16848. (Pubitemid 39601326)
25. Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, et al,. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147. (Pubitemid 34059510)
26. Sikorski RS, &, Hieter P, (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122, 19-27.
27. Walfridsson M, Anderlund M, Bao X, &, Hahn-Hagerdal B, (1997) Expression of different levels of enzymes from the Pichia stipitis XYL1 and XYL2 genes in Saccharomyces cerevisiae and its effects on product formation during xylose utilisation. Appl Microbiol Biotechnol 48, 218-224. (Pubitemid 27394753)
28. McGuire AT, &, Mangroo D, (2007) Cex1p is a novel cytoplasmic component of the Saccharomyces cerevisiae nuclear tRNA export machinery. EMBO J 26, 288-300. (Pubitemid 46160931)
29. Chung J, Bachelder RE, Lipscomb EA, Shaw LM, &, Mercurio AM, (2002) Integrin (alpha 6 beta 4) regulation of eIF-4E activity and VEGF translation: a survival mechanism for carcinoma cells. J Cell Biol 158, 165-174.
30. Li Y, Chen G, &, Liu W, (2010) Multiple metabolic signals influence GAL gene activation by modulating the interaction of Gal80p with the transcriptional activator Gal4p. Mol Microbiol 78, 414-428.
31. Petrangeli E, Lenti L, Buchetti B, Chinzari P, Sale P, Salvatori L, Ravenna L, Lococo E, Morgante E, Russo A, et al,. (2009) Lipido-sterolic extract of Serenoa repens (LSESr, Permixon) treatment affects human prostate cancer cell membrane organization. J Cell Physiol 219, 69-76.
32. Huang J, Yin Y, Mei D, Zhang G, Pan Z, Liu X, &, Jiao X, (2010) Preparation and characterization of monoclonal antibodies specific for FlaA protein of Campylobacter jejuni. Wei Sheng Wu Xue Bao 50, 1109-1114.