ContigScape: A Cytoscape plugin facilitating microbial genome gap closing

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Tang, Biao ^a,b   Wang, Qi ^c,f   Yang, Minjun ^b   Xie, Feng ^c   Zhu, Yongqiang ^b   Zhuo, Ying ^c   Wang, Shengyue ^b   Gao, Hong ^c   Ding, Xiaoming ^a   Zhang, Lixin ^c   Zhao, Guoping ^a,b,d,e   Zheng, Huajun ^b  

^a FUDAN UNIVERSITY   (China)

^b CHINESE NATIONAL HUMAN GENOME CENTER AT SHANGHAI   (China)

^c INSTITUTE OF MICROBIOLOGY   (China)

^d INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

^e CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

^f UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

ContigScape; Gap closing; Linkage; Microbial; Repeat contig; Visualization

Indexed keywords

RIBOSOME RNA;

ARCHAEAL GENOME; ARTICLE; BACTERIAL GENOME; COMPUTER PROGRAM; CONTIG MAPPING; DISPLAY SYSTEM; FUNGAL GENOME; GENETIC LINKAGE; GENOME ANALYSIS; HIGH THROUGHPUT SEQUENCING; MICROBIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; SEQUENCE ANALYSIS; VIRUS GENOME;

CONTIG MAPPING; DATABASES, NUCLEIC ACID; GENOME, BACTERIAL; GENOMICS; HUMANS; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SOFTWARE;

PROKARYOTA;

EID: 84876797683     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-289     Document Type: Article

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