The complete genome sequence of Mycoplasma bovis strain Hubei-1

PLoS ONE

Volumn 6, Issue 6, 2011, Pages

  Li, Yuan ^a   Zheng, Huajun ^b   Liu, Yang ^a   Jiang, Yanwei ^b   Xin, Jiuqing ^a   Chen, Wei ^a   Song, Zhiqiang ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b CHINESE NATIONAL HUMAN GENOME CENTER AT SHANGHAI   (China)

Author keywords

[No Author keywords available]

Indexed keywords

5' NUCLEOTIDASE; ABC TRANSPORTER; CYSTEINE PROTEINASE; DIHYDROLIPOAMIDE DEHYDROGENASE; DNA TOPOISOMERASE (ATP HYDROLYSING) B; GLYCEROL; GLYCEROL 3 PHOSPHATE DEHYDROGENASE; GLYCEROL KINASE; HEMOLYSIN; LACTATE DEHYDROGENASE; METHIONINE SULFOXIDE; OUTER SURFACE PROTEIN A; PERMEASE; PUTRESCINE; PYRUVATE DEHYDROGENASE; REPLICATION INITIATOR PROTEIN DNAA; RNA POLYMERASE; SPERMIDINE; THIOCTIC ACID; THREONINE TRANSFER RNA LIGASE; TRIOSEPHOSPHATE ISOMERASE;

ARTICLE; BACTERIAL GENETICS; BACTERIAL GENOME; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIAL VIRULENCE; CARBON SOURCE; CODON; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA REPAIR; DNA REPLICATION; GENE INSERTION SEQUENCE; GENE SEQUENCE; HORIZONTAL GENE TRANSFER; IMMUNE RESPONSE; MYCOPLASMA AGALACTIAE; MYCOPLASMA BOVIS; MYCOPLASMA MYCOIDES; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PARALOGY; PHYLOGENY; PROTEIN PROCESSING; PSEUDOGENE; TANDEM REPEAT; TRANSCRIPTION REGULATION; BACTERIAL CHROMOSOME; DNA REPLICATION ORIGIN; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PATHOGENICITY; PROTEIN SYNTHESIS; SEQUENCE HOMOLOGY; VIRULENCE;

ANIMALIA; MYCOPLASMA AGALACTIAE; MYCOPLASMA BOVIS; MYCOPLASMA MYCOIDES; MYCOPLASMATALES;

BASE SEQUENCE; CHROMOSOMES, BACTERIAL; DNA REPAIR; DNA REPLICATION; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MYCOPLASMA BOVIS; PHYLOGENY; PROTEIN BIOSYNTHESIS; PSEUDOGENES; REPLICATION ORIGIN; SEQUENCE HOMOLOGY, NUCLEIC ACID; TANDEM REPEAT SEQUENCES; TRANSCRIPTION, GENETIC; VIRULENCE;

EID: 79959416407     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0020999     Document Type: Article

References (56)

1. Adegboye DS, Halbur PG, Nutsch RG, Kadlec R, Rosenbuch RF, (1996) Mycoplasma bovis-associated pneumonia and arthritis complicated with pyogranulomatous tenosynovitis in calves. JAVMA 209: 647-649.
2. Walz PH, Mullaney TP, Render JA, (1997) Otitis media in preweaned holstein dairy calves in Michigan due to Mycoplasma bovis. J Vet Diagn Invest 9: 250-254.
3. Pfutzner H, Saches K, (1996) Mycoplasma bovis as an agent of matitis, pneumonia, arthritis and genital disorders in cattle. Rev Sci Tech Off Int Epiz 15: 1477-1494.
4. Maunsell FP, Donovan GA, (2009) Mycoplasma bovis infection in young calves. Vet Clin Food Anim 25: 139-177.
5. Robin P, Alberti A, Oittau M, Chessa B, Miciletta M, et al. (2005) Genetic and antigenic characterization of the surface lipoprotein P48 of Mycoplasma bovis. Vet Micro 109: 201-209.
6. Thomas A, Ball H, Dizzier I, Trolin A, Bell C, et al. (2002) Isolation of mycoplasma species from the lower respiratory tract of healthy cattle and cattle with respiratory disease in Belgium. Vet Rec 151: 472-476.
7. Milles H, Lesser W, Sears P, (1992) The economic implication of bioengineered mastitis control. J Dairy Sci 75: 596-705.
8. Maunsell FP, Donovan GA, Risco C, Brown MB, (2009) Field evaluation of a Mycoplasma bovis bacterin in young dairy calves. Vaccine 27: 2781-2788.
9. Caswell JL, Archambault M, (2007) Mycoplasma bovis pneumonia in cattle. Anim Health Res Rev 8 (2): 161-186.
10. Robino P, Alberti A, Pittau M, Chessa B, Miciletta M, (2005) Genetic and antigenic characterization of the surface lipoprotein P48 of Mycoplasma bovis. Vet Microbiol 109 (3-4): 201-209.
11. Foddai A, Idini G, Fusco M, Rosa N, de la Fe C, et al. (2005) Rapid differential diagnosis of Mycoplasma agalactiae and Mycoplasma bovis based on a multiplex-PCR and a PCR-RFLP. Mol Cell Probes 19 (3): 207-212.
12. Thomas A, Linden A, Mainil J, Dizier I, Baseman JB, et al. (2004) The p40* adhesin pseudogene of Mycoplasma bovis. Vet Microbiol 104 (3-4): 213-217.
13. Lysnyansky I, Yogev D, Levisohn S, (2008) Molecular characterization of the Mycoplasma bovis p68 gene, encoding a basic membrane protein with homology to P48 of Mycoplasma agalactiae. FEMS Microbiol Lett 279 (2): 234-242.
14. Lysnyansky I, Sachse K, Rosenbusch R, Levisohn S, Yogev D, (1999) The vsp locus of Mycoplasma bovis: gene organization and structural features. J Bacteriol 181 (18): 5734-5741.
15. Poumarat F, Perrin B, Longchambon D, (1991) Identification of ruminant mycoplasmas by dot immunobinding on membrane filtration (MF dot). Vet Micro 29: 329-338.
16. Hotzel H, Sachse K, Pfützner H, (1996) Rapid detection of Mycoplasma bovis in milk samples and nasal swabs using the polymerase chain reaction. J Appl Bacteriol 80: 505-510.
17. Bhugra B, Dybvig K, (1993) Identification and characterization of IS1138, a transposable element from Mycoplasma pulmonis that belongs to the IS3 family. Mol Microbiol 7 (4): 577-584.
18. Dybvig K, Zuhua C, Lao P, Jordan DS, French CT, et al. (2008) Genome of Mycoplasma arthritidis. Infect Immun 76 (9): 4000-4008.
19. Chambaud I, Heilig R, Ferris S, Barbe V, Samson D, et al. (2001) The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis. Nucleic Acids Res 29 (10): 2145-2153.
20. Neyrolles O, Chambaud I, Ferris S, Prevost MC, Sasaki T, et al. (1999) Phase variations of the Mycoplasma penetrans main surface lipoprotein increase antigenic diversity. Infect Immun 67 (4): 1569-1578.
21. Mackiewicz P, Zakrzewska-Czerwinska J, Zawilak A, Dudek MR, (2004) Cebrat S. Where does bacterial replication start? Rules for predicting the oriC region. Nucleic Acids Res 32 (13): 3781-3791.
22. Fujikawa N, Kurumizaka H, Nureki O, Terada T, Shirouzu M, et al. (2003) Structural basis of replication origin recognition by the DnaA protein. Nucleic Acids Res 31 (8): 2077-2086.
23. Picardeau M, Lobry JR, Hinnebusch BJ, (1999) Physical mapping of an origin of bidirectional replication at the centre of the Borrelia burgdorferi linear chromosome. Mol Microbiol 32 (2): 437-445.
24. Himmelreich R, Hilbert H, Plagens H, Pirkl E, Li BC, et al. (1996) Complete sequence analysis of the genome of th7e bacterium Mycoplasma pneumoniae. Nucleic Acids Res 24 (22): 4420-4449.
25. Borukhov S, Lee J, Laptenko O, (2005) Bacterial transcription elongation factors: new insights into molecular mechanism of action. Mol Microbiol 55 (5): 1315-1324.
26. Chang LJ, Chen WH, Minion FC, Shiuan D, (2008) Mycoplasmas regulate the expression of heat-shock protein genes through CIRCE-HrcA interactions. Biochem Biophys Res Commun 367 (1): 213-218.
27. van der Merwe J, Prysliak T, Perez-Casal J, (2010) Invasion of bovine peripheral blood mononuclear cells and erythrocytes by Mycoplasma bovis. Infect Immun 78 (11): 4570-4578.
28. ROTTEM S, RAZIN S, (1964) LIPASE ACTIVITY OF MYCOPLASMA. J Gen Microbiol 37: 123-134.
29. Pilo P, Vilei EM, Peterhans E, Bonvin-Klotz L, Stoffel MH, et al. (2005) A metabolic enzyme as a primary virulence factor of Mycoplasma mycoides subsp. mycoides small colony. J Bacteriol 187 (19): 6824-6831.
30. Schmidt H, Hensel M, (2004) Pathogenicity islands in bacterial pathogenesis. Clin Microbiol Rev 17 (1): 14-56.
31. Goebel W, Chakraborty T, Kreft J, (1988) Bacterial hemolysins as virulence factors. Antonie Van Leeuwenhoek 54 (5): 453-463.
32. O'Riordan M, Moors MA, Portnoy DA, (2003) Listeria intracellular growth and virulence require host-derived lipoic acid. Science 302 (5644): 462-464.
33. Gates AE, Frasca S, Nyaoke A, Gorton TS, Silbart LK, et al. (2008) Comparative assessment of a metabolically attenuated Mycoplasma gallisepticum mutant as a live vaccine for the prevention of avian respiratory mycoplasmosis. Vaccine 26 (16): 2010-2019.
34. Burns EH Jr, Marciel AM, Musser JM, (1996) Activation of a 66-kilodalton human endothelial cell matrix metalloprotease by Streptococcus pyogenes extracellular cysteine protease. Infect Immun 64 (11): 4744-4750.
35. Kirillicheva GB, Kudriavtsev LIu, Belaia IuA, Tumanian MA, (1987) [Functional macrophage activity in infection with virulent and avirulent strains of the dysentery microbe]. Zh Mikrobiol Epidemiol Immunobiol 5: 76-79.
36. Rouquette C, de Chastellier C, Nair S, Berche P, (1998) The ClpC ATPase of Listeria monocytogenes is a general stress protein required for virulence and promoting early bacterial escape from the phagosome of macrophages. Mol Microbiol 27 (6): 1235-1245.
37. Nair S, Milohanic E, Berche P, (2000) ClpC ATPase is required for cell adhesion and invasion of Listeria monocytogenes. Infect Immun 68 (12): 7061-7068.
38. Sanders JD, Cope LD, Hansen EJ, (1994) Identification of a locus involved in the utilization of iron by Haemophilus influenzae. Infect Immun 62 (10): 4515-4525.
39. Westberg J, Persson A, Holmberg A, Goesmann A, Lundeberg J, et al. (2004) The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP). Genome Res 14 (2): 221-227.
40. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437 (7057): 376-380.
41. Tettelin H, Radune D, Kasif S, Khouri H, Salzberg SL, (1999) Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project. Genomics 62 (3): 500-507.
42. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL, (1999) Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27 (23): 4636-4641.
43. Guo FB, Ou HY, Zhang CT, (2003) ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes. Nucleic Acids Res 31 (6): 1780-1789.
44. Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25 (5): 955-964.
45. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 (17): 3389-3402.
46. Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, et al. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res 35 (Database issue): 237-240.
47. Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M, (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32 (Database issue): 277-280.
48. Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, et al. (2005) PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21 (5): 617-623.
49. Juncker AS, Willenbrock H, Von Heijne G, Brunak S, Nielsen H, et al. (2003) Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci 12 (8): 1652-1662.
50. Langille MG, Brinkman FS, (2009) IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 25 (5): 664-665.
51. Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J, (2005) Bioinformatics 21 (16): 3422-3423.
52. Ghai R, Hain T, Chakraborty T, (2004) GenomeViz: visualizing microbial genomes. BMC Bioinformatics 5: 198.
53. Uchiyama I, (2003) MBGD: microbial genome database for comparative analysis. Nucleic Acids Res 31 (1): 58-62.
54. Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 (22): 4673-4680.
55. Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17 (4): 540-552.
56. Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52 (5): 696-704.