The rat 5S rRNA bona fide gene repeat maps to chromosome 19q12->qter and the pseudogene repeat maps to 12q12

Cytogenetics and Cell Genetics

Volumn 76, Issue 1-2, 1997, Pages 101-106

  Frederiksen, S ^a   Cao, H ^a   Lomholt, B ^a   Levan, G ^b   Hallenberg, C ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 5S;

ANIMAL CELL; ARTICLE; CHROMOSOME 12Q; CHROMOSOME 19Q; DNA FLANKING REGION; GENE ISOLATION; GENOME; METAPHASE CHROMOSOME; NONHUMAN; PRIORITY JOURNAL; PSEUDOGENE; RAT; RNA GENE; TANDEM REPEAT;

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; DNA, RIBOSOMAL; GENE DOSAGE; MOLECULAR SEQUENCE DATA; PSEUDOGENES; RATS; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA, RIBOSOMAL, 5S; TRANSCRIPTION, GENETIC;

EID: 0030971215     PISSN: 03010171     EISSN: 1424859X     Source Type: Journal    
DOI: 10.1159/000134523     Document Type: Article

References (27)

1. Andersen J: Ph.D. Thesis. University of Copenhagen. Copenhagen. Denmark (1996).
2. Aovama K, Hidaka S, Tanaka T, Ishikawa K: The nucleotide sequence of 5S RNA from rat liver ribosomes. J Biochem 91:363-367 (1982).
3. Arnold GJ, Kahnt B, Herrenknecht K, Gross HJ: A variant gene and a pseudogcne for human 5S RNA are transcriptionally active in vitro. Gene 60:137-144 (1987).
4. Dignam JD, Lebowitz RM, Rocder RG: Accurate transcription initiation by polymerase II in a soluble extract from isolated mammalian nuclei. Nucl Acids Res 11:1475-1489 (1983).
5. Doran JL, Bingle WH, Roy KL: The nucleotide sequence of two human 5S rRNA pscudogcncs. Nucl Acids Res 15:6297 (1987).
6. Drouin G, Moniz de Sd M: The concerted evolution of 5S ribosomal genes linked to the repeat units of other multigene families. Mol Biol Evol 12:481-493 (1995).
7. Emerson BM, Roeder RG: Isolation and genomic arrangement of active and inactive forms of mammalian 5S RNA genes. J Biol Chem 259:7916-7925 (1984a).
8. Emerson BM, Roeder RG: DNA sequences and transcription factor interactions of active and inactive forms of mammalian 5S RNA genes. J Biol Chem 259:7926-7935 (1984b).
9. Greilhuber J, Volleth M, Loidl J: Genome size of man and animals relative to the plant Allium cepa. Can J Cytol 25:554-560 (1983).
10. Hallenberg C, Nederby Nielsen J, Frederiksen S: Characterization of 5S rRNA genes from mouse. Gene 142:291-295 (1994).
11. Hart RP, Folk WR: Structure and organization of a mammalian 5S gene cluster. J Biol Chem 257:11706-11711 (1982).
12. Huang CJ, Huang FI, Wang YC, Hsiao PW, Lo TB: Molecular cloning of a highly repetitive //indlll sequence in three cyprinid species: silver carp, bighead carp and grass carp. Proc natl Sci Counc. Repub China B 17:85-90 (1993).
13. Kandonaga JT, Jones KA, Tjian R: Promotor-specific activation of RNA polymerase II transcription by Spl. Trends Biochem 11:20-23 (1986).
14. Leah R, Frederiksen S, Engberg J, Sorensen PD: Nucleotide sequence of a mouse 5S rRNA variant gene. Nucl Acids Res 18:7441 (1990).
15. Lee KAW, Hai T-Y, Sivaraman L, Thimmappaya B, Hurst HC, Jones NC, Green MR: A cellular protein, activating transcription factor, activates transcription of multiple ElA-inducible adenovirus early promotors. Proc natl Acad Sci. USA 84:8355-8359 (1987).
16. Little RD, Braaten DC: Genomic organization of human 5S rDNA and sequence of one tandem repeat. Genomics 4:376-383 (1989).
17. Lomholt B, Frederiksen S, Nederby Nielsen J, Hallen-bcrg C: Additional assignment of the human 5S rRNA genes to chromosome lq31. Cvtogenet Cell Genet 70:76-79 (1995a).
18. Lomholt B, Christensen K, Hallenberg C, Frcdcriksen S: Porcine 5S rRNA genes map lo 14q23 revealing syntenic relation to human HSPA6- and 7. Mammal Genome 6:439-441 (1995b).
19. Nederby Nielsen J, Hallenberg C, Frederiksen S, Sorensen PD, Lomholt B: Transcription of human 5S rRNA genes is influenced by an upstream DNA sequence. Nucl Acids Res 21:3631-3636 (1993).
20. Reddy R, Henning D, Rothblum L, Busch H: Some gene variants for 5S RNA are dispersed in the rat genome. J Biol Chem 261:10618-10623 (1986).
21. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning. A Laboratory Manual, 2nd Ed (Cold Spring Harbar Laboratory. Cold Spring Harbor 1989).
22. Specht T, Wolters J, Erdman VA: Compilation of 5S rRNA and 5S rRNA gene sequences. Nucl Acids Res 19 Suppl: 21-89 (1991).
23. Suzuki H, Moriwaki K, Sakurai S: Sequences and evolutionary analysis of mouse 5S rDNAs. Mol Biol Evol 11:704-710 (1994).
24. Suzuki H, Sakurai S, Matsuda Y: Rat 5S rRNA spacer sequences and chromosomal assignment of the genes to the extreme terminal region of chromosome 19. Cytogenet Cell Genet 72:1-4 (1996).
25. Szabo P, Lee MR, Elder FB, Prensky W: Localization of 5S RNA and rRNA genes in the Norway rat. Chromosoma 65:161-172 (1978).
26. Sorensen PD, Simonsen H, Frederiksen S: Nucleotide sequence of a human 5S rRNA gene. Nucl Acids Res 18:30-60 (1990).
27. Sorensen PD, Frederiksen S: Characterization of human 5S rRNA genes. Nucl Acids Res 19:4147-4151 (1991).