-
2
-
-
0003585297
-
-
Jim Gray, series editor. 2nd ed. San Francisco, CA: Morgan Kaufmann Publishers. ISBN 1-55860-901-6
-
Han J, Kamber M. In: Jim Gray, series editor. Data Mining: Concepts and Techniques. 2nd ed. San Francisco, CA: Morgan Kaufmann Publishers; 2006. ISBN 1-55860-901-6.
-
(2006)
Data Mining: Concepts and Techniques
-
-
Han, J.1
Kamber, M.2
-
6
-
-
84892356132
-
Workflow Management in Condor
-
Taylor I, Deelman E, Gannon D, Shields M, eds. Berlin, Deutschland: Springer Press. ISBN: 1-84628-519-4.
-
Couvares P, Kosar T, Roy A, Jeff Weber J, Wenger K. Workflow Management in Condor. In: Taylor I, Deelman E, Gannon D, Shields M, eds. Workflows for e-Science. Berlin, Deutschland: Springer Press; 2007. ISBN: 1-84628-519-4.
-
(2007)
Workflows for e-Science
-
-
Couvares, P.1
Kosar, T.2
Roy, A.3
Jeff Weber, J.4
Wenger, K.5
-
7
-
-
18244389754
-
The semantic grid: past, present, and future
-
De Roure D, Jennings NR, Shadbolt NR. The semantic grid: past, present, and future. Proc IEEE 2005, 93:669-681.
-
(2005)
Proc IEEE
, vol.93
, pp. 669-681
-
-
De Roure, D.1
Jennings, N.R.2
Shadbolt, N.R.3
-
9
-
-
0141948505
-
The semantic grid: a future e-Science infrastructure
-
Berman F, Hey AJG, Fox G, eds. John Wiley & Sons;
-
De Roure D, Jennings NR, Shadbolt N. The semantic grid: a future e-Science infrastructure. In: Berman F, Hey AJG, Fox G, eds. Grid Computing: Making The Global Infrastructure a Reality. John Wiley & Sons; 2003, 437-470.
-
(2003)
Grid Computing: Making The Global Infrastructure a Reality
, pp. 437-470
-
-
De Roure, D.1
Jennings, N.R.2
Shadbolt, N.3
-
10
-
-
84875973198
-
An advanced survey on cloud computing and state-of-the-art research issues
-
Ahmed M, Chowdhury ASMR, Ahmed M, Rafee MMH. An advanced survey on cloud computing and state-of-the-art research issues. Int J Comp Sci 2012, 9:201-207.
-
(2012)
Int J Comp Sci
, vol.9
, pp. 201-207
-
-
Ahmed, M.1
Chowdhury, A.S.M.R.2
Ahmed, M.3
Rafee, M.M.H.4
-
12
-
-
84876699939
-
-
The NIST definition of cloud computing. Recommendations of the National Institute of Standards and Technology. Available at:. (Accessed March 13, 2013).
-
Mell P, Grance T. The NIST definition of cloud computing. Recommendations of the National Institute of Standards and Technology; 2011. Available at: http://csrc.nist.gov/publications/nistpubs/800-145/SP800-145.pdf. (Accessed March 13, 2013).
-
(2011)
-
-
Mell, P.1
Grance, T.2
-
13
-
-
77955517176
-
Perspectives on grid computing
-
Schwiegelshohn U, Badia RM, Bubak M, Danelutto M, Dustdar S, Gagliardi F, Geiger A, Ladislav Hluchy L, Kranzlmuller D, Laure E, et al. Perspectives on grid computing. Future Gen Comp Syst 2010, 26:1104-1115.
-
(2010)
Future Gen Comp Syst
, vol.26
, pp. 1104-1115
-
-
Schwiegelshohn, U.1
Badia, R.M.2
Bubak, M.3
Danelutto, M.4
Dustdar, S.5
Gagliardi, F.6
Geiger, A.7
Ladislav Hluchy, L.8
Kranzlmuller, D.9
Laure, E.10
-
14
-
-
84876729841
-
-
Parallel and Distributed Data Mining. in Kimito Funatsu (ed.), New Fundamental Technologies in data Mining, ISBN: 978-953-307-547-1, InTech. Coimbatore, India. Available at:. (Accessed March 13, 2013).
-
Paul S. Parallel and Distributed Data Mining. in Kimito Funatsu (ed.), New Fundamental Technologies in data Mining, ISBN: 978-953-307-547-1, InTech. Coimbatore, India; 2011. Available at: http://cdn.intechopen.com/pdfs/13261/InTech-Para-llel_and_distributed_data_mining.pdf. (Accessed March 13, 2013).
-
(2011)
-
-
Paul, S.1
-
15
-
-
36048988753
-
Grid-enabling data mining applications with DataMiningGrid: an architectural perspective
-
Stankovski V, Swain M, Kravtsov V, Niessen T, Wegener D, Kindermann J, Dubitzky W. Grid-enabling data mining applications with DataMiningGrid: an architectural perspective. Sci Direct Future Gen Comp Syst 2008, 24:259-279.
-
(2008)
Sci Direct Future Gen Comp Syst
, vol.24
, pp. 259-279
-
-
Stankovski, V.1
Swain, M.2
Kravtsov, V.3
Niessen, T.4
Wegener, D.5
Kindermann, J.6
Dubitzky, W.7
-
16
-
-
4243061781
-
Knowledge Grid: an architecture for distributed knowledge discovery
-
Cannataro M, Talia D. Knowledge Grid: an architecture for distributed knowledge discovery. Commun ACM 2003, 46:89-93.
-
(2003)
Commun ACM
, vol.46
, pp. 89-93
-
-
Cannataro, M.1
Talia, D.2
-
17
-
-
55849147008
-
-
Stankovski V, Swain M, Kravtsov V, Niessen T, Wegener D, Rohm M, Trnkoczy J, May M, Franke J, Schuster A, Dubitzky W. EEE Int Comput 2008, 12:69-76.
-
(2008)
EEE Int Comput
, vol.12
, pp. 69-76
-
-
Stankovski, V.1
Swain, M.2
Kravtsov, V.3
Niessen, T.4
Wegener, D.5
Rohm, M.6
Trnkoczy, J.7
May, M.8
Franke, J.9
Schuster, A.10
Dubitzky, W.11
-
18
-
-
84876711243
-
-
Knowledge-based grids. Technical Report San Diego Supercomputer Center, SDCS TR-2001-2. Available at:. (Accessed March 13, 2013).
-
Moore R. Knowledge-based grids. Technical Report San Diego Supercomputer Center, SDCS TR-2001-2; 2001. Available at: http://legacy.sdsc.edu/techreports/TR-2001-02.doc.pdf. (Accessed March 13, 2013).
-
(2001)
-
-
Moore, R.1
-
19
-
-
85024247118
-
From TeraGrid to Knowledge Grid
-
Berman F. From TeraGrid to Knowledge Grid. CACM 2001, 44:27-28.
-
(2001)
CACM
, vol.44
, pp. 27-28
-
-
Berman, F.1
-
20
-
-
0036787181
-
Computational and data grids in large-scale science and engineering
-
Johnston WE. Computational and data grids in large-scale science and engineering. Future Gen Comp Syst 2002, 18:1085-1100.
-
(2002)
Future Gen Comp Syst
, vol.18
, pp. 1085-1100
-
-
Johnston, W.E.1
-
21
-
-
10044293277
-
Distributed data mining on grids: services, tools, and applications
-
Cannataro M, Congiusta A, Pugliese A, Talia D, Trunfio P. Distributed data mining on grids: services, tools, and applications. IEEE Trans Syst Man Cybern B 2004, 34:2451-2465.
-
(2004)
IEEE Trans Syst Man Cybern B
, vol.34
, pp. 2451-2465
-
-
Cannataro, M.1
Congiusta, A.2
Pugliese, A.3
Talia, D.4
Trunfio, P.5
-
22
-
-
11844288918
-
The emerging role of biogrids
-
Ellisman M, Brady M, Hart D, Lin FP, Müller M, Smarr L. The emerging role of biogrids. Commun ACM 2004, 47:52-57.
-
(2004)
Commun ACM
, vol.47
, pp. 52-57
-
-
Ellisman, M.1
Brady, M.2
Hart, D.3
Lin, F.P.4
Müller, M.5
Smarr, L.6
-
23
-
-
70449721741
-
GridSnake: a Grid-based Implementation of the Snake Segmentation Algorithm
-
Albuquerque, NM;
-
Cannataro M, Guzzi PH, Lobosco M, Weber dos Santos R. GridSnake: a Grid-based Implementation of the Snake Segmentation Algorithm. 22nd IEEE International Symposium on Computer-Based Medical Systems, 2009. CBMS 2009. Albuquerque, NM; 2009, 1-6.
-
(2009)
22nd IEEE International Symposium on Computer-Based Medical Systems, 2009. CBMS 2009
, pp. 1-6
-
-
Cannataro, M.1
Guzzi, P.H.2
Lobosco, M.3
Weber dos Santos, R.4
-
24
-
-
47749146198
-
Automatic segmentation of cardiac mri using snakes and genetic algorithms
-
Bubak M, van Albada GD, Dongarra J, Sloot PMA, eds. Berlin, Deutschland: Springer;
-
Teixeira GM, Pommeranzembaum IR, de Oliveira BL, Lobosco M, dos Santos RW. Automatic segmentation of cardiac mri using snakes and genetic algorithms. In: Bubak M, van Albada GD, Dongarra J, Sloot PMA, eds. ICCS (3), volume 5103 of Lecture Notes in Computer Science. Berlin, Deutschland: Springer; 2008, 168-177.
-
(2008)
ICCS (3), volume 5103 of Lecture Notes in Computer Science
, pp. 168-177
-
-
Teixeira, G.M.1
Pommeranzembaum, I.R.2
de Oliveira, B.L.3
Lobosco, M.4
dos Santos, R.W.5
-
25
-
-
78149299776
-
In silico research in the era of cloud computing
-
Dudley JT, Butte AJ. In silico research in the era of cloud computing. Nat Biotechnol 2010, 28:1181-1185.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1181-1185
-
-
Dudley, J.T.1
Butte, A.J.2
-
27
-
-
84858330364
-
Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community
-
2012
-
Krampis K, Booth T, Chapman B, Tiwari B, Bicak M, Field D, Nelson KE. Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. BMC Bioinform 2012, 13:42.
-
BMC Bioinform
, vol.13
, pp. 42
-
-
Krampis, K.1
Booth, T.2
Chapman, B.3
Tiwari, B.4
Bicak, M.5
Field, D.6
Nelson, K.E.7
-
29
-
-
76749092270
-
The WEKA data mining software: an update
-
11: 1-18.
-
Hall M, Frank E, Holmes G, Pfahringer B, Reutemann P, Witten IH. The WEKA data mining software: an update. SIGKDD Explor 2009, 11: 1-18.
-
(2009)
SIGKDD Explor
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
Witten, I.H.6
-
30
-
-
0034776419
-
Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT
-
Kretschmann E, Fleischmann W, Apweiler R. Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT. Bioinformatics 2001, 17:920-6.
-
(2001)
Bioinformatics
, vol.17
, pp. 920-926
-
-
Kretschmann, E.1
Fleischmann, W.2
Apweiler, R.3
-
31
-
-
1842743412
-
Automated annotation of keywords for proteins related to mycoplasmataceae using machine learning techniques
-
Bazzan AL, Engel PM, Schroeder LF, da Silva SC. Automated annotation of keywords for proteins related to mycoplasmataceae using machine learning techniques. Bioinformatics 2002, 18:S35-S43.
-
(2002)
Bioinformatics
, vol.18
-
-
Bazzan, A.L.1
Engel, P.M.2
Schroeder, L.F.3
da Silva, S.C.4
-
32
-
-
1042275290
-
Evaluating machine learning approaches for aiding probe selection for gene-expression arrays
-
Tobler JB, Molla MN, Nuwaysir EF, Green RD, Shavlik JW. Evaluating machine learning approaches for aiding probe selection for gene-expression arrays. Bioinformatics 2002, 18:S164-S71.
-
(2002)
Bioinformatics
, vol.18
-
-
Tobler, J.B.1
Molla, M.N.2
Nuwaysir, E.F.3
Green, R.D.4
Shavlik, J.W.5
-
33
-
-
0037433042
-
Towards a computational model for -1 eukaryotic frameshifting sites
-
Bekaert M, Bidou L, Denise A, Duchateau-Nguyen G, Forest JP, Froidevaux C, et al. Towards a computational model for -1 eukaryotic frameshifting sites. Bioinformatics 2003, 19:327-35.
-
(2003)
Bioinformatics
, vol.19
, pp. 327-335
-
-
Bekaert, M.1
Bidou, L.2
Denise, A.3
Duchateau-Nguyen, G.4
Forest, J.P.5
Froidevaux, C.6
-
34
-
-
0037731046
-
Application of metabolomics to plant genotype discrimination using statistics and machine learning
-
Taylor J, King RD, Altmann T, Fiehn O. Application of metabolomics to plant genotype discrimination using statistics and machine learning. Bioinformatics 2002, 18:S241-S248.
-
(2002)
Bioinformatics
, vol.18
-
-
Taylor, J.1
King, R.D.2
Altmann, T.3
Fiehn, O.4
-
35
-
-
7244250182
-
Data mining in bioinformatics using Weka
-
Frank E, Hall M, Trigg L, Holmes G, Witten IH. Data mining in bioinformatics using Weka. Bioinform Appl Note 2004, 20:2479-2481.
-
(2004)
Bioinform Appl Note
, vol.20
, pp. 2479-2481
-
-
Frank, E.1
Hall, M.2
Trigg, L.3
Holmes, G.4
Witten, I.H.5
-
36
-
-
84875072637
-
A WEKA interface for fMRI data
-
Pyka M, Balz A, Jansen A, Krug A, Hüllermeier E. A WEKA interface for fMRI data. Neuroinformatics 2012, 10:409-413.
-
(2012)
Neuroinformatics
, vol.10
, pp. 409-413
-
-
Pyka, M.1
Balz, A.2
Jansen, A.3
Krug, A.4
Hüllermeier, E.5
-
37
-
-
84876698948
-
-
Weka-parallel: machine learning in parallel. Available at:. (Accessed March 13, 2013).
-
Celis S, Musicant DR. Weka-parallel: machine learning in parallel. Available at: http://weka-parallel.sourceforge.net/report.pdf. (Accessed March 13, 2013).
-
-
-
Celis, S.1
Musicant, D.R.2
-
38
-
-
26944450174
-
Grid-enabled Weka: a toolkit for machine learning on the Grid
-
Khoussainov R, Zuo X, Kushmerick N. Grid-enabled Weka: a toolkit for machine learning on the Grid. ERCIM News 2004, 59:47-48.
-
(2004)
ERCIM News
, vol.59
, pp. 47-48
-
-
Khoussainov, R.1
Zuo, X.2
Kushmerick, N.3
-
39
-
-
33748444869
-
Design and Implementation of a Data Mining Grid-aware Architecture
-
Pérez MS, Sánchez A, Robles V, Herrero P, Peña JM. Design and Implementation of a Data Mining Grid-aware Architecture. FutureGen Comp Syst 2007, 23:42-47.
-
(2007)
FutureGen Comp Syst
, vol.23
, pp. 42-47
-
-
Pérez, M.S.1
Sánchez, A.2
Robles, V.3
Herrero, P.4
Peña, J.M.5
-
40
-
-
26944487959
-
Adapting the Weka data mining toolkit to a grid based environment
-
Pérez MS, Sánchez A, Robles V, Herrero P, Peña JM. Adapting the Weka data mining toolkit to a grid based environment. Adv Web Intell Lect Notes Comput Sci 2005, 3528:492-497.
-
(2005)
Adv Web Intell Lect Notes Comput Sci
, vol.3528
, pp. 492-497
-
-
Pérez, M.S.1
Sánchez, A.2
Robles, V.3
Herrero, P.4
Peña, J.M.5
-
41
-
-
55349106937
-
The Weka4WS framework for distributed data mining in service-oriented Grids
-
Talia D, Trunfio P, Verta O. The Weka4WS framework for distributed data mining in service-oriented Grids. Concurr Comput Pract Exp 2008, 20:1933-1951.
-
(2008)
Concurr Comput Pract Exp
, vol.20
, pp. 1933-1951
-
-
Talia, D.1
Trunfio, P.2
Verta, O.3
-
43
-
-
80655141268
-
Single nucleotide polymorphisms of ABCC5 and ABCG1 transporter genes correlate to irinotecan-associated gastrointestinal toxicity in colorectal cancer patients: A DMET microarray profiling study
-
Di Martino MT, Arbitrio M, Leone E, Guzzi PH, Saveria Rotundo M, Ciliberto D, Tomaino V, Fabiani F, Talarico D, Sperlongano P, et al. Single nucleotide polymorphisms of ABCC5 and ABCG1 transporter genes correlate to irinotecan-associated gastrointestinal toxicity in colorectal cancer patients: A DMET microarray profiling study. Cancer Biol Ther 2011, 12:780-778.
-
(2011)
Cancer Biol Ther
, vol.12
, pp. 780-778
-
-
Di Martino, M.T.1
Arbitrio, M.2
Leone, E.3
Guzzi, P.H.4
Saveria Rotundo, M.5
Ciliberto, D.6
Tomaino, V.7
Fabiani, F.8
Talarico, D.9
Sperlongano, P.10
-
45
-
-
17244381413
-
Tutorial section: there is no silver bullet a guide to low-level data transforms and normalization methods for microarray data
-
Kreil DP, Russell RR. Tutorial section: there is no silver bullet a guide to low-level data transforms and normalization methods for microarray data. Brief Bioinform 2005, 6:86-97.
-
(2005)
Brief Bioinform
, vol.6
, pp. 86-97
-
-
Kreil, D.P.1
Russell, R.R.2
-
46
-
-
33745022557
-
A classification based framework for quantitative description of large-scale microarray data
-
Sangurdekar D, Srienc F, Khodursky A. A classification based framework for quantitative description of large-scale microarray data. Genome Biol 2006, 7:R32+.
-
(2006)
Genome Biol
, vol.7
-
-
Sangurdekar, D.1
Srienc, F.2
Khodursky, A.3
-
47
-
-
69849094662
-
affypara-a bioconductor package for parallelized preprocessing algorithms of affymetrix microarray data
-
Schmidberger M, Vicedo E, Mansmann U. affypara-a bioconductor package for parallelized preprocessing algorithms of affymetrix microarray data. Bioinform Biol Insights 2009, 30:83-87.
-
(2009)
Bioinform Biol Insights
, vol.30
, pp. 83-87
-
-
Schmidberger, M.1
Vicedo, E.2
Mansmann, U.3
-
48
-
-
77953261563
-
mu-cs: An extension of the tm4 platform to manage affymetrix binary data
-
Guzzi PH, Mario Cannataro M. mu-cs: An extension of the tm4 platform to manage affymetrix binary data. BMC Bioinform 2010, 11:315.
-
(2010)
BMC Bioinform
, vol.11
, pp. 315
-
-
Guzzi, P.H.1
Mario Cannataro, M.2
-
49
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature 2003, 422:198-207.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
50
-
-
42049115116
-
Computational proteomics: management and analysis of proteomics data
-
Cannataro M. Computational proteomics: management and analysis of proteomics data. Brief Bioinform 2008, 9:97-101.
-
(2008)
Brief Bioinform
, vol.9
, pp. 97-101
-
-
Cannataro, M.1
-
51
-
-
33846449108
-
Sharing mass spectrometry data in a grid-based distributed proteomics laboratory
-
Veltri P, Cannataro M, Tradigo G. Sharing mass spectrometry data in a grid-based distributed proteomics laboratory. Inf Process Manage 2007, 43:577-591.
-
(2007)
Inf Process Manage
, vol.43
, pp. 577-591
-
-
Veltri, P.1
Cannataro, M.2
Tradigo, G.3
-
52
-
-
8344284323
-
A common open representation of mass spectrometry data and its application to proteomics research
-
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R. A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol 2004, 22:1459-1466.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1459-1466
-
-
Pedrioli, P.G.1
Eng, J.K.2
Hubley, R.3
Vogelzang, M.4
Deutsch, E.W.5
Raught, B.6
Pratt, B.7
Nilsson, E.8
Angeletti, R.H.9
Apweiler, R.10
-
53
-
-
15944393188
-
The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments
-
Orchard S, Montecchi-Palazzi L, Hermjakob H, Apweiler R. The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments. Pac Symp Biocomput 2005, 186-196.
-
(2005)
Pac Symp Biocomput
, pp. 186-196
-
-
Orchard, S.1
Montecchi-Palazzi, L.2
Hermjakob, H.3
Apweiler, R.4
-
54
-
-
78651082595
-
mzML-a community standard for mass spectrometry data
-
Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J, Tang WH, Römpp A, Neumann S, Pizarro AD, et al. mzML-a community standard for mass spectrometry data. Mol Cell Proteomics 2011, 10:R110.000133.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Martens, L.1
Chambers, M.2
Sturm, M.3
Kessner, D.4
Levander, F.5
Shofstahl, J.6
Tang, W.H.7
Römpp, A.8
Neumann, S.9
Pizarro, A.D.10
-
55
-
-
42049118310
-
Machine learning methods for predictive proteomics
-
Barla A, Jurman G, Riccadonna S, Chierici M, Merler S, Furlanello C. Machine learning methods for predictive proteomics. Brief Bioinform 2008, 9:119-128.
-
(2008)
Brief Bioinform
, vol.9
, pp. 119-128
-
-
Barla, A.1
Jurman, G.2
Riccadonna, S.3
Chierici, M.4
Merler, S.5
Furlanello, C.6
-
56
-
-
0345359315
-
myGrid: personalised bioinformatics on the information Grid
-
Stevens RD, Robinson AJ, Goble CA. myGrid: personalised bioinformatics on the information Grid. Bioinformatics 2004, 19:302-302C.
-
(2004)
Bioinformatics
, vol.19
-
-
Stevens, R.D.1
Robinson, A.J.2
Goble, C.A.3
-
57
-
-
34548560604
-
A services oriented system for bioinformatics applications on the grid. CACT-NNL/CNR-INFM, CMCC, University of Salento, Lecce, Italy
-
Aloisio G, Cafaro M, Epicoco I, Fiore S, Mirto M. A services oriented system for bioinformatics applications on the grid. CACT-NNL/CNR-INFM, CMCC, University of Salento, Lecce, Italy. Stud Health Technol Inform 2005, 126:174-183.
-
(2005)
Stud Health Technol Inform
, vol.126
, pp. 174-183
-
-
Aloisio, G.1
Cafaro, M.2
Epicoco, I.3
Fiore, S.4
Mirto, M.5
-
58
-
-
33748460808
-
Using ontologies for preprocessing and mining spectra data on the grid
-
Cannataro, M, Guzzi, PH, Mazza T, Tradigo G, Veltri, P. Using ontologies for preprocessing and mining spectra data on the grid. Future Gen Comp Syst 2007, 23:55-60.
-
(2007)
Future Gen Comp Syst
, vol.23
, pp. 55-60
-
-
Cannataro, M.1
Guzzi, P.H.2
Mazza, T.3
Tradigo, G.4
Veltri, P.5
-
60
-
-
33748798478
-
Graph-based methods for analysing networks in cell biology
-
Aittokallio T, Schwikowski B. Graph-based methods for analysing networks in cell biology. Brief Bioinform 2006, 7:243-255.
-
(2006)
Brief Bioinform
, vol.7
, pp. 243-255
-
-
Aittokallio, T.1
Schwikowski, B.2
-
61
-
-
78650153693
-
Protein-to-protein interactions: Technologies, databases, and algorithms
-
Cannataro M, Guzzi PH, Veltri P. Protein-to-protein interactions: Technologies, databases, and algorithms. ACM Comput Surv 2010, 43:1:1-1:36.
-
(2010)
ACM Comput Surv
, vol.43
-
-
Cannataro, M.1
Guzzi, P.H.2
Veltri, P.3
-
62
-
-
33751435209
-
cPath: open source software for collecting, storing, and querying biological pathways
-
Cerami EG, Bader GD, Gross BE, Sander C. cPath: open source software for collecting, storing, and querying biological pathways. BMC Bioinform 2006, 7:497.
-
(2006)
BMC Bioinform
, vol.7
, pp. 497
-
-
Cerami, E.G.1
Bader, G.D.2
Gross, B.E.3
Sander, C.4
-
63
-
-
84862298784
-
Semantic similarity analysis of protein data: assessment with biological features and issues
-
Guzzi PH, Mina M, Guerra C, Cannataro M. Semantic similarity analysis of protein data: assessment with biological features and issues. Brief Bioinform 2012, 13:569-585.
-
(2012)
Brief Bioinform
, vol.13
, pp. 569-585
-
-
Guzzi, P.H.1
Mina, M.2
Guerra, C.3
Cannataro, M.4
-
64
-
-
78650402576
-
A large set of estrogen receptor β-interacting proteins identified by tandem affinity purification in hormone-responsive human breast cancer cell nuclei
-
Nassa G, Tarallo R, Ambrosino C, Bamundo A, Ferraro L, Paris O, Ravo M, Guzzi PH, Cannataro M, Baumann M, et al. A large set of estrogen receptor β-interacting proteins identified by tandem affinity purification in hormone-responsive human breast cancer cell nuclei. Proteomics 2011, 11:159-65.
-
(2011)
Proteomics
, vol.11
, pp. 159-165
-
-
Nassa, G.1
Tarallo, R.2
Ambrosino, C.3
Bamundo, A.4
Ferraro, L.5
Paris, O.6
Ravo, M.7
Guzzi, P.H.8
Cannataro, M.9
Baumann, M.10
-
65
-
-
41649106470
-
Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition
-
Orchard S, Kerrien S, Jones P, Ceol A, Chatr-Aryamontri A, Salwinski L, Nerothin J, Hermjakob H. Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition. Proteomics 2007, 7:28-34.
-
(2007)
Proteomics
, vol.7
, pp. 28-34
-
-
Orchard, S.1
Kerrien, S.2
Jones, P.3
Ceol, A.4
Chatr-Aryamontri, A.5
Salwinski, L.6
Nerothin, J.7
Hermjakob, H.8
-
66
-
-
0742323374
-
The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data
-
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, et al. The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data. Nat Biotechnol 2004, 22:177-183.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
von Mering, C.10
-
67
-
-
84862164356
-
AlignNemo: a local network alignment method to integrate homology and topology
-
Ciriello G, Mina M, Guzzi PH, Cannataro M, Guerra C. AlignNemo: a local network alignment method to integrate homology and topology. PLoS ONE 2012, 7:e38107.
-
(2012)
PLoS ONE
, vol.7
-
-
Ciriello, G.1
Mina, M.2
Guzzi, P.H.3
Cannataro, M.4
Guerra, C.5
-
69
-
-
39149087720
-
NetworkBLAST: comparative analysis of protein networks
-
Kalaev M, Smoot M, Ideker T, Sharan R. NetworkBLAST: comparative analysis of protein networks. Bioinformatics 2008, 24:594-596.
-
(2008)
Bioinformatics
, vol.24
, pp. 594-596
-
-
Kalaev, M.1
Smoot, M.2
Ideker, T.3
Sharan, R.4
-
70
-
-
33748257786
-
Graemlin: general and robust alignment of multiple large interaction networks
-
Flannick J, Novak A, Srinivasan BS, McAdams HH, Batzoglou S. Graemlin: general and robust alignment of multiple large interaction networks. Genome Res 2006, 16:1169-1181.
-
(2006)
Genome Res
, vol.16
, pp. 1169-1181
-
-
Flannick, J.1
Novak, A.2
Srinivasan, B.S.3
McAdams, H.H.4
Batzoglou, S.5
-
71
-
-
27544482831
-
Preprocessing of mass spectrometry proteomics data on the grid
-
Dublin, Ireland: Trinity College Dublin;
-
Cannataro M, Guzzi PH, Mazza T, Tradigo G, Veltri P. Preprocessing of mass spectrometry proteomics data on the grid. 18th IEEE International Symposium on Computer-Based Medical Systems (CBMS'05). Dublin, Ireland: Trinity College Dublin; 2005, 549-554.
-
(2005)
18th IEEE International Symposium on Computer-Based Medical Systems (CBMS'05)
, pp. 549-554
-
-
Cannataro, M.1
Guzzi, P.H.2
Mazza, T.3
Tradigo, G.4
Veltri, P.5
-
72
-
-
80051675196
-
Parallel preprocessing of affymetrix microarray data
-
Ischia: Euro-Par 2010 Workshops, Lecture Notes in Computer Science;
-
Cannataro M, Guzzi PH. Parallel preprocessing of affymetrix microarray data. Workshop HIBB 2010 (High performance bioinformatics and biomedicine), held in conjunction with Int Conference Euro-Par 2010. Ischia: Euro-Par 2010 Workshops, Lecture Notes in Computer Science; 2010, 6586:225-232.
-
(2010)
Workshop HIBB 2010 (High performance bioinformatics and biomedicine), held in conjunction with Int Conference Euro-Par 2010
, vol.6586
, pp. 225-232
-
-
Cannataro, M.1
Guzzi, P.H.2
-
73
-
-
79953894950
-
Machine learning approaches for the neuroimaging study of Alzheimer's disease
-
Ye J, Wu T, Li J, Chen K. Machine learning approaches for the neuroimaging study of Alzheimer's disease. IEEE Comp Soc 2011, 44:99-101.
-
(2011)
IEEE Comp Soc
, vol.44
, pp. 99-101
-
-
Ye, J.1
Wu, T.2
Li, J.3
Chen, K.4
-
74
-
-
79951548200
-
Challenge and opportunities in mining neuroscience data
-
Akil H, Martone ME, Van Essen DC. Challenge and opportunities in mining neuroscience data. Science 2011, 331:708-712.
-
(2011)
Science
, vol.331
, pp. 708-712
-
-
Akil, H.1
Martone, M.E.2
Van Essen, D.C.3
-
75
-
-
4344563109
-
A review of structural magnetic resonance neuroimaging
-
Symms M, Jäger HR, Schmierer K, Yousry TA. A review of structural magnetic resonance neuroimaging. J Neurol Neurosurg Psychiat 2004, 75:1235-1244.
-
(2004)
J Neurol Neurosurg Psychiat
, vol.75
, pp. 1235-1244
-
-
Symms, M.1
Jäger, H.R.2
Schmierer, K.3
Yousry, T.A.4
-
76
-
-
84944817192
-
On the regulation of blood supply of the brain
-
Roy CS, Sherrington CS. On the regulation of blood supply of the brain. J Physiol 1890, 1:85-108.
-
(1890)
J Physiol
, vol.1
, pp. 85-108
-
-
Roy, C.S.1
Sherrington, C.S.2
-
77
-
-
33646376290
-
Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient
-
Stejskal EO, Tanner JE. Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J Chem Phys 1965, 42:288-292.
-
(1965)
J Chem Phys
, vol.42
, pp. 288-292
-
-
Stejskal, E.O.1
Tanner, J.E.2
-
78
-
-
0033758059
-
Data mining in brain imaging
-
Megalooikonomou V, Ford J, Shen L, Makedon F. Data mining in brain imaging. Stat Method Med Res 2000, 9:359-394.
-
(2000)
Stat Method Med Res
, vol.9
, pp. 359-394
-
-
Megalooikonomou, V.1
Ford, J.2
Shen, L.3
Makedon, F.4
-
81
-
-
73849088741
-
Comparison of AdaBoost and support vector machines for detecting Alzheimer's disease through automated hippocampal segmentation
-
Morra JH, Tu Z, Apostolova LG, Green AE, Toga AW, Thompson PM. Comparison of AdaBoost and support vector machines for detecting Alzheimer's disease through automated hippocampal segmentation. IEEE Trans Med Imaging 2010, 29:30-43.
-
(2010)
IEEE Trans Med Imaging
, vol.29
, pp. 30-43
-
-
Morra, J.H.1
Tu, Z.2
Apostolova, L.G.3
Green, A.E.4
Toga, A.W.5
Thompson, P.M.6
-
82
-
-
85161983244
-
Spatial and anatomical regularization of SVM from brain image analysis
-
Cuingnet R, Chupin M, Benali H, Colliot O. Spatial and anatomical regularization of SVM from brain image analysis. Proc NIPS; 2010, 460-468.
-
(2010)
Proc NIPS
, pp. 460-468
-
-
Cuingnet, R.1
Chupin, M.2
Benali, H.3
Colliot, O.4
-
83
-
-
84876717679
-
Cognitive states from brain images: SVM approach
-
Special Issue
-
Swain R, Jena L, Kamila NK. Cognitive states from brain images: SVM approach. Int J Comput Commun Technol 2010, 2(Special Issue):194-199.
-
(2010)
Int J Comput Commun Technol
, vol.2
, pp. 194-199
-
-
Swain, R.1
Jena, L.2
Kamila, N.K.3
-
84
-
-
84875072637
-
A WEKA interface for fMRI data
-
Pyka M, Balz A, Jansen A, Krug Hüllermeier E. A WEKA interface for fMRI data. Neuroinformatics 2012, 10:409-413.
-
(2012)
Neuroinformatics
, vol.10
, pp. 409-413
-
-
Pyka, M.1
Balz, A.2
Jansen, A.3
Krug Hüllermeier, E.4
-
85
-
-
80051660823
-
Data mining methods in the prediction of Dementia: a real-data comparison of the accuracy, sensitivity and specificity of linear discriminant analysis, logistic regression, neural networks, support vector machines, classification trees and random forests
-
Maroco J, Silva D, Rodrigues A, Guerreiro M, Santana I, de Mendoça A. Data mining methods in the prediction of Dementia: a real-data comparison of the accuracy, sensitivity and specificity of linear discriminant analysis, logistic regression, neural networks, support vector machines, classification trees and random forests. BMC Res Notes 2011, 4:299.
-
(2011)
BMC Res Notes
, vol.4
, pp. 299
-
-
Maroco, J.1
Silva, D.2
Rodrigues, A.3
Guerreiro, M.4
Santana, I.5
de Mendoça, A.6
-
86
-
-
65549168742
-
Machine learning classifiers and fMRI: a tutorial overview
-
Pereira F, Mitchell T, Botvinick M. Machine learning classifiers and fMRI: a tutorial overview. Neuroimage 2009, 45:S199-S209.
-
(2009)
Neuroimage
, vol.45
-
-
Pereira, F.1
Mitchell, T.2
Botvinick, M.3
-
91
-
-
65349099567
-
A grid-based distributed SVM data mining algorithm
-
Meligy A, Al-Khatib M. A grid-based distributed SVM data mining algorithm. Eur J Sci Res. 2009, 313-321.
-
(2009)
Eur J Sci Res
, pp. 313-321
-
-
Meligy, A.1
Al-Khatib, M.2
-
92
-
-
47549112333
-
Distributed parallel support vector machines in strongly connected networks
-
Lu Y, Roychowdhury V, Vandenberghe L. Distributed parallel support vector machines in strongly connected networks. IEEE Trans Neural Netw 2008, 19:1167-1178.
-
(2008)
IEEE Trans Neural Netw
, vol.19
, pp. 1167-1178
-
-
Lu, Y.1
Roychowdhury, V.2
Vandenberghe, L.3
-
93
-
-
84893965543
-
-
Beijing, China: Google Research.
-
Chang EY, Zhu K, Wang H, Bai H, Li J, Zhihuan Qiu Z, Cui H. PSVM: Parallelizing Support Vector Machines on Distributed Computers. Beijing, China: Google Research.
-
PSVM: Parallelizing Support Vector Machines on Distributed Computers
-
-
Chang, E.Y.1
Zhu, K.2
Wang, H.3
Bai, H.4
Li, J.5
Zhihuan Qiu, Z.6
Cui, H.7
-
96
-
-
84876712565
-
-
Los Angeles, CA: Computer Science Department, University of California.
-
Falaki H. AdaBoost Algorithm. Los Angeles, CA: Computer Science Department, University of California.
-
AdaBoost Algorithm
-
-
Falaki, H.1
-
97
-
-
33646023117
-
An introduction to ROC analysis
-
Fawcett T. An introduction to ROC analysis. J Pattern Recogn Lett 2006, 27:861-874.
-
(2006)
J Pattern Recogn Lett
, vol.27
, pp. 861-874
-
-
Fawcett, T.1
-
98
-
-
3042623801
-
Integrating ontology and workflow in PROTEUS, a grid-based problem solving environment for bioinformatics
-
Cannataro M, Comito C, Guzzo A, Veltri P. Integrating ontology and workflow in PROTEUS, a grid-based problem solving environment for bioinformatics. Proc Inf Technol: Coding and Comput Conf (ITCC 2004) 2004, 2:90-94.
-
(2004)
Proc Inf Technol: Coding and Comput Conf (ITCC 2004)
, vol.2
, pp. 90-94
-
-
Cannataro, M.1
Comito, C.2
Guzzo, A.3
Veltri, P.4
-
100
-
-
34848911078
-
MS-Analyzer: composing and executing preprocessing and data mining services for proteomics applications on the grid
-
Cannataro M, Veltri P. MS-Analyzer: composing and executing preprocessing and data mining services for proteomics applications on the grid. Concurr Comp Pract Exp 2007, 19:2047-2066.
-
(2007)
Concurr Comp Pract Exp
, vol.19
, pp. 2047-2066
-
-
Cannataro, M.1
Veltri, P.2
-
101
-
-
85006167821
-
Managing ontologies for grid computing
-
Cannataro M, Guzzi PH, Mazza T, Tradigo G, Veltri P. Managing ontologies for grid computing. Multiagent Grid Syst 2006, 2:29-44.
-
(2006)
Multiagent Grid Syst
, vol.2
, pp. 29-44
-
-
Cannataro, M.1
Guzzi, P.H.2
Mazza, T.3
Tradigo, G.4
Veltri, P.5
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