Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT

Bioinformatics

Volumn 17, Issue 10, 2001, Pages 920-926

  Kretschmann, Ernst ^a   Fleischmann, Wolfgang ^a   Apweiler, Rolf ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ANALYTICAL ERROR; ARTICLE; AUTOMATION; CONTROLLED STUDY; DATA BASE; INFORMATION PROCESSING; MEDICAL LITERATURE; PRIORITY JOURNAL; PROTEIN ANALYSIS; RELIABILITY; SEQUENCE ANALYSIS; STANDARD; STATISTICAL ANALYSIS; TAXONOMY; VALIDATION PROCESS;

EID: 0034776419     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.10.920     Document Type: Article

References (17)

1. Protein sequence databases
2. Functional information in SWISS-PROT: The basis for large-scale characterisation of protein sequences
3. InterPro-an integrated documentation resource for protein families, domains and functional sites
4. PRINTS-S: The database formery known as PRINTS
5. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
6. The Pfam protein falilies database
7. ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
8. A novel method for automatic functional annotation of proreins
9. The Gene Ontology Consortium Gene Ontology: Tool for the unification of biology
10. The PROSITE database, its status in 1999
11. Constructing optimal binary decision trees is NP-complete
12. Representation of functional information in the SWISS-PROT data bank
13. WWW access to the SYSTERS protein sequence cluster set
14. CluSTr: A database of clusters of SWISS-PROT + TrEMBL proteins
15. EDITtoTrEMBL: A distributed approach to high-quality automated protein sequence annotation
16. Induction of decision trees