-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams MD, et al. 2000. The genome sequence of Drosophila melanogaster. Science 287:2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215:403-410.
-
(1990)
J Mol Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio S, et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297:1301-1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
-
4
-
-
77957370433
-
Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics
-
Arensburger P, et al. 2010. Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics. Science 330: 86-88.
-
(2010)
Science
, vol.330
, pp. 86-88
-
-
Arensburger, P.1
-
5
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Clark AG, et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
-
6
-
-
2242464840
-
The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
-
Dehal P, et al. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298:2157-2167.
-
(2002)
Science
, vol.298
, pp. 2157-2167
-
-
Dehal, P.1
-
7
-
-
0242662461
-
Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs)
-
Dermitzakis ET, et al. 2003. Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs). Science 302:1033-1035.
-
(2003)
Science
, vol.302
, pp. 1033-1035
-
-
Dermitzakis, E.T.1
-
8
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
9
-
-
7444260846
-
The ENCODE (encyclopedia of DNA elements) project
-
ENCODE Project Consortium
-
ENCODE Project Consortium. 2004. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306:636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
-
10
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst J, et al. 2011. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473:43-49.
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
-
11
-
-
33645833857
-
Conservation of RET regulatory function from human to zebrafish without sequence similarity
-
Fisher S, Grice EA, Vinton RM, Bessling SL, McCallion AS. 2006. Conservation of RET regulatory function from human to zebrafish without sequence similarity. Science 312:276-279.
-
(2006)
Science
, vol.312
, pp. 276-279
-
-
Fisher, S.1
Grice, E.A.2
Vinton, R.M.3
Bessling, S.L.4
McCallion, A.S.5
-
12
-
-
25844481290
-
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
-
Haddrill PR, Charlesworth B, Halligan DL, Andolfatto P. 2005. Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol. 6:R67.
-
(2005)
Genome Biol.
, vol.6
-
-
Haddrill, P.R.1
Charlesworth, B.2
Halligan, D.L.3
Andolfatto, P.4
-
13
-
-
38549148421
-
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
-
Heger A, Ponting CP. 2007. Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. Genome Res. 17: 1837-1849.
-
(2007)
Genome Res.
, vol.17
, pp. 1837-1849
-
-
Heger, A.1
Ponting, C.P.2
-
14
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman ND, et al. 2009. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459:108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
-
15
-
-
33750460281
-
Insights into social insects from the genome of the honeybee Apis mellifera
-
Honeybee Genome Sequencing Consortium
-
Honeybee Genome Sequencing Consortium. 2006. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443:931-949.
-
(2006)
Nature
, vol.443
, pp. 931-949
-
-
-
16
-
-
1642325936
-
Evolutionary history and higher order classification of AAA+ ATPases
-
Iyer LM, Leipe DD, Koonin EV, Aravind L. 2004. Evolutionary history and higher order classification of AAA+ ATPases. J Struct Biol. 146: 11-31.
-
(2004)
J Struct Biol.
, vol.146
, pp. 11-31
-
-
Iyer, L.M.1
Leipe, D.D.2
Koonin, E.V.3
Aravind, L.4
-
17
-
-
7244259101
-
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
-
Jaillon O, et al. 2004. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431: 946-957.
-
(2004)
Nature
, vol.431
, pp. 946-957
-
-
Jaillon, O.1
-
18
-
-
75549090948
-
Ensembl genomes: Extending Ensembl across the taxonomic space
-
Kersey PJ, et al. 2009. Ensembl genomes: extending Ensembl across the taxonomic space. Nucleic Acids Res. 38:D563-D569.
-
(2009)
Nucleic Acids Res.
, vol.38
-
-
Kersey, P.J.1
-
19
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
Kharchenko PV, et al. 2010. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471:480-485.
-
(2010)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
-
20
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
21
-
-
58149182729
-
VectorBase: A data resource for invertebrate vector genomics
-
Lawson D, et al. 2009. VectorBase: a data resource for invertebrate vector genomics. Nucleic Acids Res. 37:D583-D587.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Lawson, D.1
-
22
-
-
80051914599
-
Three periods of regulatory innovation during vertebrate evolution
-
Lowe CB, et al. 2011. Three periods of regulatory innovation during vertebrate evolution. Science 333:1019-1024.
-
(2011)
Science
, vol.333
, pp. 1019-1024
-
-
Lowe, C.B.1
-
23
-
-
39049147650
-
Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
-
McGaughey DM, et al. 2008. Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b. Genome Res. 18:252-260.
-
(2008)
Genome Res.
, vol.18
, pp. 252-260
-
-
McGaughey, D.M.1
-
24
-
-
0031302793
-
Distant homology recognition using structural classification of proteins
-
Murzin AG, Bateman A. 1997. Distant homology recognition using structural classification of proteins. Proteins (1 Suppl):105-112.
-
(1997)
Proteins (1 Suppl)
, pp. 105-112
-
-
Murzin, A.G.1
Bateman, A.2
-
25
-
-
34250902354
-
Genome sequence of Aedes aegypti, a major arbovirus vector
-
Nene V, et al. 2007. Genome sequence of Aedes aegypti, a major arbovirus vector. Science 316:1718-1723.
-
(2007)
Science
, vol.316
, pp. 1718-1723
-
-
Nene, V.1
-
26
-
-
65449172831
-
Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins
-
Odronitz F, Becker S, Kollmar M. 2009. Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins. BMC Genomics 10:173.
-
(2009)
BMC Genomics
, vol.10
, pp. 173
-
-
Odronitz, F.1
Becker, S.2
Kollmar, M.3
-
27
-
-
75549086594
-
InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
-
Ostlund G, et al. 2010. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 38:D196-D203.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ostlund, G.1
-
28
-
-
34447300950
-
Sea anemone genome reveals ancestral Eumetazoan gene repertoire and genomic organization
-
Putnam NH, et al. 2007. Sea anemone genome reveals ancestral Eumetazoan gene repertoire and genomic organization. Science 317:86-94.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
-
29
-
-
78650331647
-
Identification of functional elements and regulatory circuits by Drosophila modENCODE
-
Roy S, et al. 2010. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330:1787-1797.
-
(2010)
Science
, vol.330
, pp. 1787-1797
-
-
Roy, S.1
-
30
-
-
84857745267
-
Database resources of the national center for biotechnology information
-
Sayers EW, et al. 2012. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40:D13-D25.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Sayers, E.W.1
-
31
-
-
0028196714
-
From sequences to shapes and back: A case study in RNA secondary structures
-
Schuster P, Fontana W, Stadler PF, Hofacker IL. 1994. From sequences to shapes and back: a case study in RNA secondary structures. Proc Biol Sci. 255:279-284.
-
(1994)
Proc Biol Sci.
, vol.255
, pp. 279-284
-
-
Schuster, P.1
Fontana, W.2
Stadler, P.F.3
Hofacker, I.L.4
-
32
-
-
79959887501
-
Genome-wide identification of conserved regulatory function in diverged sequences
-
Taher L, et al. 2011. Genome-wide identification of conserved regulatory function in diverged sequences. Genome Res. 21:1139-1149.
-
(2011)
Genome Res.
, vol.21
, pp. 1139-1149
-
-
Taher, L.1
-
33
-
-
34447500684
-
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans
-
Vavouri T, Walter K, Gilks WR, Lehner B, Elgar G. 2007. Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans. Genome Biol. 8:R15.
-
(2007)
Genome Biol.
, vol.8
-
-
Vavouri, T.1
Walter, K.2
Gilks, W.R.3
Lehner, B.4
Elgar, G.5
-
34
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
-
35
-
-
38549092091
-
Database resources of the National Center for Biotechnology Information
-
Wheeler DL, et al. 2008. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 36: D13-D21.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wheeler, D.L.1
-
36
-
-
20044366725
-
Highly conserved non-coding sequences are associated with vertebrate development
-
Woolfe A, et al. 2005. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol. 3:e7.
-
(2005)
PLoS Biol.
, vol.3
-
-
Woolfe, A.1
|