-
1
-
-
0035016060
-
Analysis of genomic sequences by chaos game representation
-
Almeida, J. S., Carriço, J. A., Maretzek, A., Noble, P. A., and Fletcher, M. (2001). Analysis of genomic sequences by chaos game representation. Bioinformatics 17, 429-437.
-
(2001)
Bioinformatics
, vol.17
, pp. 429-437
-
-
Almeida, J.S.1
Carriço, J.A.2
Maretzek, A.3
Noble, P.A.4
Fletcher, M.5
-
2
-
-
79551599525
-
Mugsy: Fast multiple alignment of closely related whole genomes
-
Angiuoli, S. V., and Salzberg, S. L. (2011). Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27, 334-342.
-
(2011)
Bioinformatics
, vol.27
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
3
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative. (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
4
-
-
79251632958
-
The genome of Theobroma cacao
-
Argout, X., Salse, J., Aury, J.-M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., Abrouk, M., Murat, F., Fouet, O., Poulain, J., Ruiz, M., Roguet, Y., Rodier-Goud, M., Barbosa-Neto, J. F., Sabot, F., Kudrna, D., Ammiraju, J. S., Schuster, S. C., Carlson, J. E., Sallet, E., Schiex, T., Dievart, A., Kramer, M., Gelley, L., Shi, Z., Bérard, A., Viot, C., Boccara, M., Risterucci, A. M., Guignon, V., Sabau, X., Axtell, M. J., Ma, Z., Zhang, Y., Brown, S., Bourge, M., Golser, W., Song, X., Clement, D., Rivallan, R., Tahi, M., Akaza, J. M., Pitollat, B., Gramacho, K., D'Hont, A., Brunel, D., Infante, D., Kebe, I., Costet, P., Wing, R., McCombie, W. R., Guiderdoni, E., Quetier, F., Panaud, O., Wincker, P., Bocs, S., and Lanaud, C. (2011). The genome of Theobroma cacao. Nat. Genet. 43, 101-108.
-
(2011)
Nat. Genet.
, vol.43
, pp. 101-108
-
-
Argout, X.1
Salse, J.2
Aury, J.-M.3
Guiltinan, M.J.4
Droc, G.5
Gouzy, J.6
Allegre, M.7
Chaparro, C.8
Legavre, T.9
Maximova, S.N.10
Abrouk, M.11
Murat, F.12
Fouet, O.13
Poulain, J.14
Ruiz, M.15
Roguet, Y.16
Rodier-Goud, M.17
Barbosa-Neto, J.F.18
Sabot, F.19
Kudrna, D.20
Ammiraju, J.S.21
Schuster, S.C.22
Carlson, J.E.23
Sallet, E.24
Schiex, T.25
Dievart, A.26
Kramer, M.27
Gelley, L.28
Shi, Z.29
Bérard, A.30
Viot, C.31
Boccara, M.32
Risterucci, A.M.33
Guignon, V.34
Sabau, X.35
Axtell, M.J.36
Ma, Z.37
Zhang, Y.38
Brown, S.39
Bourge, M.40
Golser, W.41
Song, X.42
Clement, D.43
Rivallan, R.44
Tahi, M.45
Akaza, J.M.46
Pitollat, B.47
Gramacho, K.48
D'Hont, A.49
Brunel, D.50
Infante, D.51
Kebe, I.52
Costet, P.53
Wing, R.54
McCombie, W.R.55
Guiderdoni, E.56
Quetier, F.57
Panaud, O.58
Wincker, P.59
Bocs, S.60
Lanaud, C.61
more..
-
5
-
-
0031251816
-
Chaos game representation of proteins
-
Basu, S., Pan, A., Chitra, and Das, J. (1997). Chaos game representation of proteins. J. Mol. Graph. Model. 15, 279-289.
-
(1997)
J. Mol. Graph. Model.
, vol.15
, pp. 279-289
-
-
Basu, S.1
Pan, A.2
Chitra3
Das, J.4
-
6
-
-
33750028778
-
The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var "Ridge Pineapple": Organization and phylogenetic relationships to other angiosperms
-
doi:10.1186/1471-2229-6-21
-
Bausher, M. G., Singh, N. D., Lee, S.-B., Jansen, R. K., and Daniell, H. (2006). The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var "Ridge Pineapple": organization and phylogenetic relationships to other angiosperms. BMC Plant Biol. 6, 21. doi:10.1186/1471-2229-6-21
-
(2006)
BMC Plant Biol.
, vol.6
, pp. 21
-
-
Bausher, M.G.1
Singh, N.D.2
Lee, S.-B.3
Jansen, R.K.4
Daniell, H.5
-
7
-
-
78650445809
-
Recent trends in molecular phylogenetic analysis: Where to next? J
-
Blair, C., and Murphy, R. W. (2011). Recent trends in molecular phylogenetic analysis: where to next? J. Hered. 102, 130-138.
-
(2011)
Hered.
, vol.102
, pp. 130-138
-
-
Blair, C.1
Murphy, R.W.2
-
8
-
-
0033529862
-
Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA
-
Campbell, A., Mrázek, J., and Karlin, S. (1999). Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc. Natl. Acad. Sci. U.S.A. 96, 9184-9189.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 9184-9189
-
-
Campbell, A.1
Mrázek, J.2
Karlin, S.3
-
9
-
-
34848884808
-
Towards a phylogenetic nomenclature of Tracheophyta
-
Cantino, P. D., Doyle, J. A., Graham, S. W., Judd, W. S., Olmstead, R. G., Soltis, D. E., Soltis, P. S., and Donoghue, M. J. (2007). Towards a phylogenetic nomenclature of Tracheophyta. Taxon 56, 1E-44E.
-
(2007)
Taxon
, vol.56
-
-
Cantino, P.D.1
Doyle, J.A.2
Graham, S.W.3
Judd, W.S.4
Olmstead, R.G.5
Soltis, D.E.6
Soltis, P.S.7
Donoghue, M.J.8
-
10
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G., and Thompson, J. D. (2003). Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31, 3497-3500.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
11
-
-
48949106158
-
New insights into mechanism and regulation of actin capping protein
-
Cooper, J. A., and Sept, D. (2008). New insights into mechanism and regulation of actin capping protein. Int. Rev. Cell Mol. Biol. 267, 183-206.
-
(2008)
Int. Rev. Cell Mol. Biol.
, vol.267
, pp. 183-206
-
-
Cooper, J.A.1
Sept, D.2
-
12
-
-
79954529507
-
ProtTest 3: Fast selection of best-fit models of protein evolution
-
Darriba, D., Taboada, G. L., Doallo, R., and Posada, D. (2011). ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27, 1164-1165.
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
13
-
-
80052272774
-
The genome of the extremophile crucifer Thellungiella parvula
-
Dassanayake, M., Oh, D.-H., Haas, J. S., Hernandez, A., Hong, H., Ali, S., Yun, D.-J., Bressan, R. A., Zhu, J.-K., Bohnert, H. J., and Cheeseman, J. M. (2011). The genome of the extremophile crucifer Thellungiella parvula. Nat. Genet. 43, 913-918.
-
(2011)
Nat. Genet.
, vol.43
, pp. 913-918
-
-
Dassanayake, M.1
Oh, D.-H.2
Haas, J.S.3
Hernandez, A.4
Hong, H.5
Ali, S.6
Yun, D.-J.7
Bressan, R.A.8
Zhu, J.-K.9
Bohnert, H.J.10
Cheeseman, J.M.11
-
14
-
-
0032823783
-
Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences
-
Deschavanne, P. J., Giron, A., Vilain, J., Fagot, G., and Fertil, B. (1999). Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. Mol. Biol. Evol. 16, 1391-1399.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1391-1399
-
-
Deschavanne, P.J.1
Giron, A.2
Vilain, J.3
Fagot, G.4
Fertil, B.5
-
15
-
-
84860014577
-
Whole-genome alignment
-
Dewey, C. N. (2012). Whole-genome alignment. Methods Mol. Biol. 855, 237-257.
-
(2012)
Methods Mol. Biol.
, vol.855
, pp. 237-257
-
-
Dewey, C.N.1
-
16
-
-
75849146491
-
Efficient estimation of pairwise distances between genomes
-
Domazet-Loso, M., and Haubold, B. (2009). Efficient estimation of pairwise distances between genomes. Bioinformatics 25, 3221-3227.
-
(2009)
Bioinformatics
, vol.25
, pp. 3221-3227
-
-
Domazet-Loso, M.1
Haubold, B.2
-
17
-
-
0036700153
-
A genomic schism in birds revealed by phylogenetic analysis of DNA strings
-
Edwards, S. V., Fertil, B., Giron, A., and Deschavanne, P. J. (2002). A genomic schism in birds revealed by phylogenetic analysis of DNA strings. Syst. Biol. 51, 599-613.
-
(2002)
Syst. Biol.
, vol.51
, pp. 599-613
-
-
Edwards, S.V.1
Fertil, B.2
Giron, A.3
Deschavanne, P.J.4
-
18
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
19
-
-
33749037156
-
The ARP2/3 complex: An actin nucleator comes of age
-
Goley, E. D., and Welch, M. D. (2006). The ARP2/3 complex: an actin nucleator comes of age. Nat. Rev. Mol. Cell Biol. 7, 713-726.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 713-726
-
-
Goley, E.D.1
Welch, M.D.2
-
20
-
-
84862531800
-
Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein
-
doi:10.1186/1471-2148-12-95
-
Hammesfahr, B., and Kollmar, M. (2012). Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein. BMC Evol. Biol. 12, 95. doi:10.1186/1471-2148-12-95
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 95
-
-
Hammesfahr, B.1
Kollmar, M.2
-
21
-
-
80052591179
-
diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data
-
doi:10.1186/1756-0500-4-338
-
Hammesfahr, B., Odronitz, F., Hellkamp, M., and Kollmar, M. (2011). diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. BMC Res. Notes 4, 338. doi:10.1186/1756-0500-4-338
-
(2011)
BMC Res. Notes
, vol.4
, pp. 338
-
-
Hammesfahr, B.1
Odronitz, F.2
Hellkamp, M.3
Kollmar, M.4
-
22
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu, T. T., Pattyn, P., Bakker, E. G., Cao, J., Cheng, J.-F., Clark, R. M., Fahlgren, N., Fawcett, J. A., Grimwood, J., Gundlach, H., Haberer, G., Hollister, J. D., Ossowski, S., Ottilar, R. P., Salamov, A. A., Schneeberger, K., Spannagl, M., Wang, X., Yang, L., Nasrallah, M. E., Bergelson, J., Carrington, J. C., Gaut, B. S., Schmutz, J., Mayer, K. F., van de Peer, Y., Grigoriev, I. V., Nordborg, M., Weigel, D., and Guo, Y. L. (2011). The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat. Genet. 43, 476-481.
-
(2011)
Nat. Genet.
, vol.43
, pp. 476-481
-
-
Hu, T.T.1
Pattyn, P.2
Bakker, E.G.3
Cao, J.4
Cheng, J.-F.5
Clark, R.M.6
Fahlgren, N.7
Fawcett, J.A.8
Grimwood, J.9
Gundlach, H.10
Haberer, G.11
Hollister, J.D.12
Ossowski, S.13
Ottilar, R.P.14
Salamov, A.A.15
Schneeberger, K.16
Spannagl, M.17
Wang, X.18
Yang, L.19
Nasrallah, M.E.20
Bergelson, J.21
Carrington, J.C.22
Gaut, B.S.23
Schmutz, J.24
Mayer, K.F.25
van de Peer, Y.26
Grigoriev, I.V.27
Nordborg, M.28
Weigel, D.29
Guo, Y.L.30
more..
-
23
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
and French-Italian Public Consortium for Grapevine Genome Characterization
-
Jaillon, O., Aury, J.-M., Noel, B., Policriti, A., Clepet, C., Casagrande, A., Choisne, N., Aubourg, S., Vitulo, N., Jubin, C., Vezzi, A., Legeai, F., Hugueney, P., Dasilva, C., Horner, D., Mica, E., Jublot, D., Poulain, J., Bruyère, C., Billault, A., Segurens, B., Gouyvenoux, M., Ugarte, E., Cattonaro, F., Anthouard, V., Vico, V., Del Fabbro, C., Alaux, M., Di Gaspero, G., Dumas, V., Felice, N., Paillard, S., Juman, I., Moroldo, M., Scalabrin, S., Canaguier, A., Le Clainche, I., Malacrida, G., Durand, E., Pesole, G., Laucou, V., Chatelet, P., Merdinoglu, D., Delledonne, M., Pezzotti, M., Lecharny, A., Scarpelli, C., Artiguenave, F., Pè, M. E., Valle, G., Morgante, M., Caboche, M., Adam-Blondon, A. F., Weissenbach, J., Quétier, F., Wincker, P., and French-Italian Public Consortium for Grapevine Genome Characterization. (2007). The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463-467.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.-M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
Vezzi, A.11
Legeai, F.12
Hugueney, P.13
Dasilva, C.14
Horner, D.15
Mica, E.16
Jublot, D.17
Poulain, J.18
Bruyère, C.19
Billault, A.20
Segurens, B.21
Gouyvenoux, M.22
Ugarte, E.23
Cattonaro, F.24
Anthouard, V.25
Vico, V.26
Del Fabbro, C.27
Alaux, M.28
Di Gaspero, G.29
Dumas, V.30
Felice, N.31
Paillard, S.32
Juman, I.33
Moroldo, M.34
Scalabrin, S.35
Canaguier, A.36
Le Clainche, I.37
Malacrida, G.38
Durand, E.39
Pesole, G.40
Laucou, V.41
Chatelet, P.42
Merdinoglu, D.43
Delledonne, M.44
Pezzotti, M.45
Lecharny, A.46
Scarpelli, C.47
Artiguenave, F.48
Pè, M.E.49
Valle, G.50
Morgante, M.51
Caboche, M.52
Adam-Blondon, A.F.53
Weissenbach, J.54
Quétier, F.55
Wincker, P.56
more..
-
24
-
-
0025340372
-
Chaos game representation of gene structure
-
Jeffrey, H. J. (1990). Chaos game representation of gene structure. Nucleic Acids Res. 18, 2163-2170.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 2163-2170
-
-
Jeffrey, H.J.1
-
25
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T., Taylor, W. R., and Thornton, J. M. (1992). The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8, 275-282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
26
-
-
33745667975
-
Chaos game representation for comparison of whole genomes
-
doi:10.1186/1471-2105-7-243
-
Joseph, J., and Sasikumar, R. (2006). Chaos game representation for comparison of whole genomes. BMC Bioinformatics 7, 243. doi:10.1186/1471-2105-7-243
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 243
-
-
Joseph, J.1
Sasikumar, R.2
-
27
-
-
0035102453
-
An information-based sequence distance and its application to whole mitochondrial genome phylogeny
-
Li, M., Badger, J. H., Chen, X., Kwong, S., Kearney, P., and Zhang, H. (2001). An information-based sequence distance and its application to whole mitochondrial genome phylogeny. Bioinformatics 17, 149-154.
-
(2001)
Bioinformatics
, vol.17
, pp. 149-154
-
-
Li, M.1
Badger, J.H.2
Chen, X.3
Kwong, S.4
Kearney, P.5
Zhang, H.6
-
28
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
Ming, R., Hou, S., Feng, Y., Yu, Q., Dionne-Laporte, A., Saw, J. H., Senin, P., Wang, W., Ly, B. V., Lewis, K. L. T., Salzberg, S. L., Feng, L., Jones, M. R., Skelton, R. L., Murray, J. E., Chen, C., Qian, W., Shen, J., Du, P., Eustice, M., Tong, E., Tang, H., Lyons, E., Paull, R. E., Michael, T. P., Wall, K., Rice, D. W., Albert, H., Wang, M. L., Zhu, Y. J., Schatz, M., Nagarajan, N., Acob, R. A., Guan, P., Blas, A., Wai, C. M., Ackerman, C. M., Ren, Y., Liu, C., Wang, J., Wang, J., Na, J. K., Shakirov, E. V., Haas, B., Thimmapuram, J., Nelson, D., Wang, X., Bowers, J. E., Gschwend, A. R., Delcher, A. L., Singh, R., Suzuki, J. Y., Tripathi, S., Neupane, K., Wei, H., Irikura, B., Paidi, M., Jiang, N., Zhang, W., Presting, G., Windsor, A., Navajas-Pérez, R., Torres, M. J., Feltus, F. A., Porter, B., Li, Y., Burroughs, A. M., Luo, M. C., Liu, L., Christopher, D. A., Mount, S. M., Moore, P. H., Sugimura, T., Jiang, J., Schuler, M. A., Friedman, V., Mitchell-Olds, T., Shippen, D. E., dePamphilis, C. W., Palmer, J. D., Freeling, M., Paterson, A. H., Gonsalves, D., Wang, L., and Alam, M. (2008). The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452, 991-996.
-
(2008)
Nature
, vol.452
, pp. 991-996
-
-
Ming, R.1
Hou, S.2
Feng, Y.3
Yu, Q.4
Dionne-Laporte, A.5
Saw, J.H.6
Senin, P.7
Wang, W.8
Ly, B.V.9
Lewis, K.L.T.10
Salzberg, S.L.11
Feng, L.12
Jones, M.R.13
Skelton, R.L.14
Murray, J.E.15
Chen, C.16
Qian, W.17
Shen, J.18
Du, P.19
Eustice, M.20
Tong, E.21
Tang, H.22
Lyons, E.23
Paull, R.E.24
Michael, T.P.25
Wall, K.26
Rice, D.W.27
Albert, H.28
Wang, M.L.29
Zhu, Y.J.30
Schatz, M.31
Nagarajan, N.32
Acob, R.A.33
Guan, P.34
Blas, A.35
Wai, C.M.36
Ackerman, C.M.37
Ren, Y.38
Liu, C.39
Wang, J.40
Wang, J.41
Na, J.K.42
Shakirov, E.V.43
Haas, B.44
Thimmapuram, J.45
Nelson, D.46
Wang, X.47
Bowers, J.E.48
Gschwend, A.R.49
Delcher, A.L.50
Singh, R.51
Suzuki, J.Y.52
Tripathi, S.53
Neupane, K.54
Wei, H.55
Irikura, B.56
Paidi, M.57
Jiang, N.58
Zhang, W.59
Presting, G.60
Windsor, A.61
Navajas-Pérez, R.62
Torres, M.J.63
Feltus, F.A.64
Porter, B.65
Li, Y.66
Burroughs, A.M.67
Luo, M.C.68
Liu, L.69
Christopher, D.A.70
Mount, S.M.71
Moore, P.H.72
Sugimura, T.73
Jiang, J.74
Schuler, M.A.75
Friedman, V.76
Mitchell-Olds, T.77
Shippen, D.E.78
dePamphilis, C.W.79
Palmer, J.D.80
Freeling, M.81
Paterson, A.H.82
Gonsalves, D.83
Wang, L.84
Alam, M.85
more..
-
29
-
-
75149150883
-
Using genomic signatures for HIV-1 sub-typing
-
Pandit, A., and Sinha, S. (2010). Using genomic signatures for HIV-1 sub-typing. BMC Bioinformatics 11(Suppl. 1), S26.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.SUPPL. 1
-
-
Pandit, A.1
Sinha, S.2
-
30
-
-
0344835813
-
Representation of amino acid sequences as two-dimensional point patterns
-
Pleissner, K. P., Wernisch, L., Oswald, H., and Fleck, E. (1997). Representation of amino acid sequences as two-dimensional point patterns. Electrophoresis 18, 2709-2713.
-
(1997)
Electrophoresis
, vol.18
, pp. 2709-2713
-
-
Pleissner, K.P.1
Wernisch, L.2
Oswald, H.3
Fleck, E.4
-
31
-
-
62449130191
-
Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
-
Sims, G. E., Jun, S.-R., Wu, G. A., and Kim, S.-H. (2009). Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proc. Natl. Acad. Sci. U.S.A. 106, 2677-2682.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 2677-2682
-
-
Sims, G.E.1
Jun, S.-R.2
Wu, G.A.3
Kim, S.-H.4
-
32
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
Stamatakis, A., Hoover, P., and Rougemont, J. (2008). A rapid bootstrap algorithm for the RAxML Web servers. Syst. Biol. 57, 758-771.
-
(2008)
Syst. Biol.
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
33
-
-
57149102681
-
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
-
Tang, H., Wang, X., Bowers, J. E., Ming, R., Alam, M., and Paterson, A. H. (2008). Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res. 18, 1944-1954.
-
(2008)
Genome Res.
, vol.18
, pp. 1944-1954
-
-
Tang, H.1
Wang, X.2
Bowers, J.E.3
Ming, R.4
Alam, M.5
Paterson, A.H.6
-
34
-
-
79957595723
-
A mystery unveiled
-
Van de Peer, Y. (2011). A mystery unveiled. Genome Biol. 12, 113.
-
(2011)
Genome Biol.
, vol.12
, pp. 113
-
-
Van de Peer, Y.1
-
35
-
-
84901275708
-
Other Brassicas
-
in, eds J. Vollmann and I. Rajcan (Springer New York)
-
Velasco, L., and Fernández-Martínez, J. M. (2010). "Other Brassicas, " in Oil Crops Handbook of Plant Breeding, eds J. Vollmann and I. Rajcan (Springer New York), 127-153.
-
(2010)
Oil Crops Handbook of Plant Breeding
, pp. 127-153
-
-
Velasco, L.1
Fernández-Martínez, J.M.2
-
36
-
-
41249098849
-
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
-
doi:10.1371/journal.pone.0001326
-
Velasco, R., Zharkikh, A., Troggio, M., Cartwright, D. A., Cestaro, A., Pruss, D., Pindo, M., Fitzgerald, L. M., Vezzulli, S., Reid, J., Malacarne, G., Iliev, D., Coppola, G., Wardell, B., Micheletti, D., Macalma, T., Facci, M., Mitchell, J. T., Perazzolli, M., Eldredge, G., Gatto, P., Oyzerski, R., Moretto, M., Gutin, N., Stefanini, M., Chen, Y., Segala, C., Davenport, C., Demattè, L., Mraz, A., Battilana, J., Stormo, K., Costa, F., Tao, Q., Si-Ammour, A., Harkins, T., Lackey, A., Perbost, C., Taillon, B., Stella, A., Solovyev, V., Fawcett, J. A., Sterck, L., Vandepoele, K., Grando, S. M., Toppo, S., Moser, C., Lanchbury, J., Bogden, R., Skolnick, M., Sgaramella, V., Bhatnagar, S. K., Fontana, P., Gutin, A., Van de Peer, Y., Salamini, F., and Viola, R. (2007). A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2, e1326. doi:10.1371/journal.pone.0001326
-
(2007)
PLoS ONE
, vol.2
-
-
Velasco, R.1
Zharkikh, A.2
Troggio, M.3
Cartwright, D.A.4
Cestaro, A.5
Pruss, D.6
Pindo, M.7
Fitzgerald, L.M.8
Vezzulli, S.9
Reid, J.10
Malacarne, G.11
Iliev, D.12
Coppola, G.13
Wardell, B.14
Micheletti, D.15
McAlma, T.16
Facci, M.17
Mitchell, J.T.18
Perazzolli, M.19
Eldredge, G.20
Gatto, P.21
Oyzerski, R.22
Moretto, M.23
Gutin, N.24
Stefanini, M.25
Chen, Y.26
Segala, C.27
Davenport, C.28
Demattè, L.29
Mraz, A.30
Battilana, J.31
Stormo, K.32
Costa, F.33
Tao, Q.34
Si-Ammour, A.35
Harkins, T.36
Lackey, A.37
Perbost, C.38
Taillon, B.39
Stella, A.40
Solovyev, V.41
Fawcett, J.A.42
Sterck, L.43
Vandepoele, K.44
Grando, S.M.45
Toppo, S.46
Moser, C.47
Lanchbury, J.48
Bogden, R.49
Skolnick, M.50
Sgaramella, V.51
Bhatnagar, S.K.52
Fontana, P.53
Gutin, A.54
Van de Peer, Y.55
Salamini, F.56
Viola, R.57
more..
-
37
-
-
0037342499
-
Alignment-free sequence comparison-a review
-
Vinga, S., and Almeida, J. (2003). Alignment-free sequence comparison-a review. Bioinformatics 19, 513-523.
-
(2003)
Bioinformatics
, vol.19
, pp. 513-523
-
-
Vinga, S.1
Almeida, J.2
-
38
-
-
62649125150
-
Rosid radiation and the rapid rise of angiosperm-dominated forests
-
Wang, H., Moore, M. J., Soltis, P. S., Bell, C. D., Brockington, S. F., Alexandre, R., Davis, C. C., Latvis, M., Manchester, S. R., and Soltis, D. E. (2009). Rosid radiation and the rapid rise of angiosperm-dominated forests. Proc. Natl. Acad. Sci. U.S.A. 106, 3853-3858.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 3853-3858
-
-
Wang, H.1
Moore, M.J.2
Soltis, P.S.3
Bell, C.D.4
Brockington, S.F.5
Alexandre, R.6
Davis, C.C.7
Latvis, M.8
Manchester, S.R.9
Soltis, D.E.10
-
39
-
-
80053386792
-
The genome of the mesopolyploid crop species Brassica rapa
-
and Brassica rapa Genome Sequencing Project Consortium
-
Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., Bai, Y., Mun, J.-H., Bancroft, I., Cheng, F., Huang, S., Li, X., Hua, W., Wang, J., Wang, X., Freeling, M., Pires, J. C., Paterson, A. H., Chalhoub, B., Wang, B., Hayward, A., Sharpe, A. G., Park, B. S., Weisshaar, B., Liu, B., Li, B., Liu, B., Tong, C., Song, C., Duran, C., Peng, C., Geng, C., Koh, C., Lin, C., Edwards, D., Mu, D., Shen, D., Soumpourou, E., Li, F., Fraser, F., Conant, G., Lassalle, G., King, G. J., Bonnema, G., Tang, H., Wang, H., Belcram, H., Zhou, H., Hirakawa, H., Abe, H., Guo, H., Wang, H., Jin, H., Parkin, I. A., Batley, J., Kim, J. S., Just, J., Li, J., Xu, J., Deng, J., Kim, J. A., Li, J., Yu, J., Meng, J., Wang, J., Min, J., Poulain, J., Wang, J., Hatakeyama, K., Wu, K., Wang, L., Fang, L., Trick, M., Links, M. G., Zhao, M., Jin, M., Ramchiary, N., Drou, N., Berkman, P. J., Cai, Q., Huang, Q., Li, R., Tabata, S., Cheng, S., Zhang, S., Zhang, S., Huang, S., Sato, S., Sun, S., Kwon, S. J., Choi, S. R., Lee, T. H., Fan, W., Zhao, X., Tan, X., Xu, X., Wang, Y., Qiu, Y., Yin, Y., Li, Y., Du, Y., Liao, Y., Lim, Y., Narusaka, Y., Wang, Y., Wang, Z., Li, Z., Wang, Z., Xiong, Z., Zhang, Z., and Brassica rapa Genome Sequencing Project Consortium. (2011). The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43, 1035-1039.
-
(2011)
Nat. Genet.
, vol.43
, pp. 1035-1039
-
-
Wang, X.1
Wang, H.2
Wang, J.3
Sun, R.4
Wu, J.5
Liu, S.6
Bai, Y.7
Mun, J.-H.8
Bancroft, I.9
Cheng, F.10
Huang, S.11
Li, X.12
Hua, W.13
Wang, J.14
Wang, X.15
Freeling, M.16
Pires, J.C.17
Paterson, A.H.18
Chalhoub, B.19
Wang, B.20
Hayward, A.21
Sharpe, A.G.22
Park, B.S.23
Weisshaar, B.24
Liu, B.25
Li, B.26
Liu, B.27
Tong, C.28
Song, C.29
Duran, C.30
Peng, C.31
Geng, C.32
Koh, C.33
Lin, C.34
Edwards, D.35
Mu, D.36
Shen, D.37
Soumpourou, E.38
Li, F.39
Fraser, F.40
Conant, G.41
Lassalle, G.42
King, G.J.43
Bonnema, G.44
Tang, H.45
Wang, H.46
Belcram, H.47
Zhou, H.48
Hirakawa, H.49
Abe, H.50
Guo, H.51
Wang, H.52
Jin, H.53
Parkin, I.A.54
Batley, J.55
Kim, J.S.56
Just, J.57
Li, J.58
Xu, J.59
Deng, J.60
Kim, J.A.61
Li, J.62
Yu, J.63
Meng, J.64
Wang, J.65
Min, J.66
Poulain, J.67
Wang, J.68
Hatakeyama, K.69
Wu, K.70
Wang, L.71
Fang, L.72
Trick, M.73
Links, M.G.74
Zhao, M.75
Jin, M.76
Ramchiary, N.77
Drou, N.78
Berkman, P.J.79
Cai, Q.80
Huang, Q.81
Li, R.82
Tabata, S.83
Cheng, S.84
Zhang, S.85
Zhang, S.86
Huang, S.87
Sato, S.88
Sun, S.89
Kwon, S.J.90
Choi, S.R.91
Lee, T.H.92
Fan, W.93
Zhao, X.94
Tan, X.95
Xu, X.96
Wang, Y.97
Qiu, Y.98
more..
-
40
-
-
14744286093
-
The spectrum of genomic signatures: From dinucleotides to chaos game representation
-
Wang, Y., Hill, K., Singh, S., and Kari, L. (2005). The spectrum of genomic signatures: from dinucleotides to chaos game representation. Gene 346, 173-185.
-
(2005)
Gene
, vol.346
, pp. 173-185
-
-
Wang, Y.1
Hill, K.2
Singh, S.3
Kari, L.4
-
41
-
-
33947634052
-
Comparative analysis of codon usage patterns among mitochondrion, chloroplast and nuclear genes in Triticum aestivum L
-
Zhang, W., Zhou, J., Li, Z., Wang, L., Gu, X., and Zhong, Y. (2007). Comparative analysis of codon usage patterns among mitochondrion, chloroplast and nuclear genes in Triticum aestivum L. J. Integr. Plant Biol. 49, 246-254.
-
(2007)
J. Integr. Plant Biol.
, vol.49
, pp. 246-254
-
-
Zhang, W.1
Zhou, J.2
Li, Z.3
Wang, L.4
Gu, X.5
Zhong, Y.6
-
42
-
-
38849141932
-
Mitochondrial matR sequences help to resolve deep phylogenetic relationships in Rosids
-
Zhu, X.-Y., Chase, M. W., Qiu, Y.-L., Kong, H.-Z., Dilcher, D. L., Li, J.-H., and Chen, Z.-D. (2007). Mitochondrial matR sequences help to resolve deep phylogenetic relationships in Rosids. BMC Evol. Biol. 7, 217.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 217
-
-
Zhu, X.-Y.1
Chase, M.W.2
Qiu, Y.-L.3
Kong, H.-Z.4
Dilcher, D.L.5
Li, J.-H.6
Chen, Z.-D.7
|