-
1
-
-
36549011407
-
AIDS epidemic update
-
Joint United Nations Program on HIV/AIDS (UNAIDS) and World Health Organization (WHO)
-
Joint United Nations Program on HIV/AIDS (UNAIDS) and World Health Organization (WHO) AIDS epidemic update. 2007, Joint United Nations Program on HIV/AIDS (UNAIDS) and World Health Organization (WHO).
-
(2007)
-
-
-
2
-
-
34547402539
-
HIV diversity, recombination and disease progression: how does fitness "fit" into the puzzle?
-
Tebit DM, Nankya I, Arts EJ, Gao Y. HIV diversity, recombination and disease progression: how does fitness "fit" into the puzzle?. AIDS Rev 2007, 9:75-87.
-
(2007)
AIDS Rev
, vol.9
, pp. 75-87
-
-
Tebit, D.M.1
Nankya, I.2
Arts, E.J.3
Gao, Y.4
-
3
-
-
0024267430
-
Fidelity of HIV-1 reverse transcriptase
-
10.1126/science.2460924, 2460924
-
Preston B, Poiesz B, Loeb L. Fidelity of HIV-1 reverse transcriptase. Science 1988, 242:1168-1171. 10.1126/science.2460924, 2460924.
-
(1988)
Science
, vol.242
, pp. 1168-1171
-
-
Preston, B.1
Poiesz, B.2
Loeb, L.3
-
4
-
-
0030747157
-
RNA virus mutations and fitness for survival
-
10.1146/annurev.micro.51.1.151, 9343347
-
Domingo E, Holland J. RNA virus mutations and fitness for survival. Annu Rev Microbiol 1997, 51:151-178. 10.1146/annurev.micro.51.1.151, 9343347.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 151-178
-
-
Domingo, E.1
Holland, J.2
-
5
-
-
37349080586
-
Global molecular epidemiology of HIV: understanding the genesis of AIDS pandemic
-
full_text, 18086407
-
Takebe Y, Uenishi R, Li X. Global molecular epidemiology of HIV: understanding the genesis of AIDS pandemic. Adv Pharmacol 2008, 56:1-25. full_text, 18086407.
-
(2008)
Adv Pharmacol
, vol.56
, pp. 1-25
-
-
Takebe, Y.1
Uenishi, R.2
Li, X.3
-
6
-
-
0001325020
-
HIV-1 Nomenclature Proposal
-
New Mexico: Los Alamos National Laboratory, Kuiken CL, Foley B, Hahn B, Korber B, McCutchan F, Marx PA, Mellors JW, Mullins JI, Sodroski J, Wolinksy S
-
Robertson DL, Anderson JP, Bradac JA, Carr JK, Foley B, Funkhouser RK, Gao F, Hahn BH, Kuiken C, Learn GH, et al. HIV-1 Nomenclature Proposal. Human Retroviruses and AIDS 1999 1999, 492-505. New Mexico: Los Alamos National Laboratory, Kuiken CL, Foley B, Hahn B, Korber B, McCutchan F, Marx PA, Mellors JW, Mullins JI, Sodroski J, Wolinksy S.
-
(1999)
Human Retroviruses and AIDS 1999
, pp. 492-505
-
-
Robertson, D.L.1
Anderson, J.P.2
Bradac, J.A.3
Carr, J.K.4
Foley, B.5
Funkhouser, R.K.6
Gao, F.7
Hahn, B.H.8
Kuiken, C.9
Learn, G.H.10
-
7
-
-
0026606297
-
The emergence of simian/human immunodeficiency viruses
-
10.1089/aid.1992.8.373, 1571197
-
Myers G, MacInnes K, Korber B. The emergence of simian/human immunodeficiency viruses. AIDS Res Hum Retroviruses 1992, 8:373-386. 10.1089/aid.1992.8.373, 1571197.
-
(1992)
AIDS Res Hum Retroviruses
, vol.8
, pp. 373-386
-
-
Myers, G.1
MacInnes, K.2
Korber, B.3
-
8
-
-
0027219687
-
Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes
-
10.1097/00002030-199306000-00003, 8363755
-
Louwagie J, McCutchan FE, Peeters M, Brennan TP, Sanders-Buell E, Eddy GA, Groen G, Fransen K, Gershy-Damet GM, Deleys R, et al. Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes. AIDS 1993, 7:769-780. 10.1097/00002030-199306000-00003, 8363755.
-
(1993)
AIDS
, vol.7
, pp. 769-780
-
-
Louwagie, J.1
McCutchan, F.E.2
Peeters, M.3
Brennan, T.P.4
Sanders-Buell, E.5
Eddy, G.A.6
Groen, G.7
Fransen, K.8
Gershy-Damet, G.M.9
Deleys, R.10
-
9
-
-
0028038231
-
Genetic and phylogenetic analysis of env subtypes G and H in central Africa
-
Janssens W, Heyndrickx L, Fransen K, Motte J, Peeters M, Nkengasong JN, Ndumbe PM, Delaporte E, Perret JL, Atende C, et al. Genetic and phylogenetic analysis of env subtypes G and H in central Africa. AIDS Res Hum Retroviruses 1994, 10:877-879.
-
(1994)
AIDS Res Hum Retroviruses
, vol.10
, pp. 877-879
-
-
Janssens, W.1
Heyndrickx, L.2
Fransen, K.3
Motte, J.4
Peeters, M.5
Nkengasong, J.N.6
Ndumbe, P.M.7
Delaporte, E.8
Perret, J.L.9
Atende, C.10
-
10
-
-
0029102137
-
Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I
-
189509, 7666516
-
Kostrikis LG, Bagdades E, Cao Y, Zhang L, Dimitriou D, Ho DD. Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I. J Virol 1995, 69:6122-6130. 189509, 7666516.
-
(1995)
J Virol
, vol.69
, pp. 6122-6130
-
-
Kostrikis, L.G.1
Bagdades, E.2
Cao, Y.3
Zhang, L.4
Dimitriou, D.5
Ho, D.D.6
-
11
-
-
0028978728
-
Yet another subtype of HIV type 1?
-
10.1089/aid.1995.11.995, 7492448
-
Leitner T, Alaeus A, Marquina S, Lilja E, Lidman K, Albert J. Yet another subtype of HIV type 1?. AIDS Res Hum Retroviruses 1995, 11:995-997. 10.1089/aid.1995.11.995, 7492448.
-
(1995)
AIDS Res Hum Retroviruses
, vol.11
, pp. 995-997
-
-
Leitner, T.1
Alaeus, A.2
Marquina, S.3
Lilja, E.4
Lidman, K.5
Albert, J.6
-
12
-
-
20244374797
-
Near-full-length genome sequencing of divergent African HIV-1 subtype F viruses leads to the identification of a new HIV-1 subtype designated K
-
10.1089/088922200309485, 10659053
-
Triques K, Bourgeois A, Vidal N, Mpoudi-Ngole E, Mulanga-Kabeya C, Nzilambi N, Torimiro N, Saman E, Delaporte E, Peeters M. Near-full-length genome sequencing of divergent African HIV-1 subtype F viruses leads to the identification of a new HIV-1 subtype designated K. AIDS Res Hum Retroviruses 2000, 16:139-151. 10.1089/088922200309485, 10659053.
-
(2000)
AIDS Res Hum Retroviruses
, vol.16
, pp. 139-151
-
-
Triques, K.1
Bourgeois, A.2
Vidal, N.3
Mpoudi-Ngole, E.4
Mulanga-Kabeya, C.5
Nzilambi, N.6
Torimiro, N.7
Saman, E.8
Delaporte, E.9
Peeters, M.10
-
13
-
-
0031743285
-
An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I)
-
110605, 9811767
-
Gao F, Robertson DL, Carruthers CD, Li Y, Bailes E, Kostrikis LG, Salminen MO, Bibollet-Ruche F, Peeters M, Ho DD, et al. An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I). J Virol 1998, 72:10234-10241. 110605, 9811767.
-
(1998)
J Virol
, vol.72
, pp. 10234-10241
-
-
Gao, F.1
Robertson, D.L.2
Carruthers, C.D.3
Li, Y.4
Bailes, E.5
Kostrikis, L.G.6
Salminen, M.O.7
Bibollet-Ruche, F.8
Peeters, M.9
Ho, D.D.10
-
14
-
-
3142681466
-
A web-based genotyping resource for viral sequences
-
10.1093/nar/gkh419, 441557, 15215470
-
Rozanov M, Plikat U, Chappey C, Kochergin A, Tatusova T. A web-based genotyping resource for viral sequences. Nucleic Acids Res 2004, 32:W654-659. 10.1093/nar/gkh419, 441557, 15215470.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Rozanov, M.1
Plikat, U.2
Chappey, C.3
Kochergin, A.4
Tatusova, T.5
-
15
-
-
84873869065
-
The Stanford HIV Drug Resistance Database
-
The Stanford HIV Drug Resistance Database. , http://hivdb.stanford.edu/index.html
-
-
-
-
16
-
-
24144500828
-
A statistical model for HIV-1 sequence classification using the subtype analyser (STAR)
-
10.1093/bioinformatics/bti569, 16046498
-
Myers RE, Gale CV, Harrison A, Takeuchi Y, Kellam P. A statistical model for HIV-1 sequence classification using the subtype analyser (STAR). Bioinformatics 2005, 21:3535-3540. 10.1093/bioinformatics/bti569, 16046498.
-
(2005)
Bioinformatics
, vol.21
, pp. 3535-3540
-
-
Myers, R.E.1
Gale, C.V.2
Harrison, A.3
Takeuchi, Y.4
Kellam, P.5
-
17
-
-
0025340372
-
Chaos game representation of gene structure
-
10.1093/nar/18.8.2163, 330698, 2336393
-
Jeffrey HJ. Chaos game representation of gene structure. Nucleic Acids Res 1990, 18:2163-2170. 10.1093/nar/18.8.2163, 330698, 2336393.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 2163-2170
-
-
Jeffrey, H.J.1
-
18
-
-
0027300694
-
Nucleotide, dinucleotide and trinucleotide frequencies explain patterns observed in chaos game representations of DNA sequences
-
10.1093/nar/21.10.2487, 309551, 8506142
-
Goldman N. Nucleotide, dinucleotide and trinucleotide frequencies explain patterns observed in chaos game representations of DNA sequences. Nucleic Acids Res 1993, 21:2487-2491. 10.1093/nar/21.10.2487, 309551, 8506142.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 2487-2491
-
-
Goldman, N.1
-
19
-
-
0035016060
-
Analysis of genomic sequences by chaos game representation
-
10.1093/bioinformatics/17.5.429, 11331237
-
Almeida JS, Carriço JA, Maretzek A, Noble PA, Fletcher M. Analysis of genomic sequences by chaos game representation. Bioinformatics 2001, 17:429-437. 10.1093/bioinformatics/17.5.429, 11331237.
-
(2001)
Bioinformatics
, vol.17
, pp. 429-437
-
-
Almeida, J.S.1
Carriço, J.A.2
Maretzek, A.3
Noble, P.A.4
Fletcher, M.5
-
20
-
-
14744286093
-
The spectrum of genomic signatures: from di-nucleotides to chaos game representation
-
10.1016/j.gene.2004.10.021, 15716010
-
Wang Y, Hill K, Singh S, Kari L. The spectrum of genomic signatures: from di-nucleotides to chaos game representation. Gene 2005, 346:173-185. 10.1016/j.gene.2004.10.021, 15716010.
-
(2005)
Gene
, vol.346
, pp. 173-185
-
-
Wang, Y.1
Hill, K.2
Singh, S.3
Kari, L.4
-
21
-
-
0027681165
-
Suffix arrays: a new method for on-line string searches
-
Manber U, Myers G. Suffix arrays: a new method for on-line string searches. SIAM J Computing 1993, 22(5):935-948.
-
(1993)
SIAM J Computing
, vol.22
, Issue.5
, pp. 935-948
-
-
Manber, U.1
Myers, G.2
-
22
-
-
21644477889
-
Changes in HIV-1 fitness and genetic diversity during disease progression
-
10.1128/JVI.79.14.9006-9018.2005, 1168764, 15994794
-
Troyer RM, Collins KR, Abraha A, Fraundorf E, Moore DM, Krizan RW, Toossi Z, Colebunders RL, Jensen MA, Mullins JI, et al. Changes in HIV-1 fitness and genetic diversity during disease progression. J Virol 2005, 79:9006-9018. 10.1128/JVI.79.14.9006-9018.2005, 1168764, 15994794.
-
(2005)
J Virol
, vol.79
, pp. 9006-9018
-
-
Troyer, R.M.1
Collins, K.R.2
Abraha, A.3
Fraundorf, E.4
Moore, D.M.5
Krizan, R.W.6
Toossi, Z.7
Colebunders, R.L.8
Jensen, M.A.9
Mullins, J.I.10
-
23
-
-
33751249244
-
HIV-1 subtype and circulating recombinant form (CRF) reference sequences
-
New Mexico: Los Alamos National Laboratory, Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B
-
Leitner T, Korber B, Daniels M, Calef C, Foley B. HIV-1 subtype and circulating recombinant form (CRF) reference sequences. HIV sequence compendium 2005, 41-48. New Mexico: Los Alamos National Laboratory, Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B.
-
(2005)
HIV sequence compendium
, pp. 41-48
-
-
Leitner, T.1
Korber, B.2
Daniels, M.3
Calef, C.4
Foley, B.5
-
24
-
-
0005045440
-
HIV Sequence Database
-
HIV Sequence Database. , http://www.hiv.lanl.gov
-
-
-
-
25
-
-
33646856527
-
The MathWorks: MATLAB
-
The MathWorks: MATLAB. , http://www.mathworks.com
-
-
-
-
26
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package
-
Felsenstein J. PHYLIP - Phylogeny Inference Package. Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
27
-
-
30744470609
-
Application of Phylogenetic Networks in Evolutionary Studies
-
10.1093/molbev/msj030, 16221896
-
Huson DH, Bryant D. Application of Phylogenetic Networks in Evolutionary Studies. Mol Biol Evol 2006, 23(2):254-267. 10.1093/molbev/msj030, 16221896.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.2
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
28
-
-
34247244553
-
Characterization of an HIV-1 group M variant that is distinct from the known subtypes
-
10.1089/aid.2006.0184, 17411380
-
Hoek L, Pollakis G, Lukashov VV, Jebbink MF, Jeeninga RE, Bakker M, Dukers N, Jurriaans S, Paxton WA, Back NKT, et al. Characterization of an HIV-1 group M variant that is distinct from the known subtypes. AIDS Research and Human Retroviruses 2007, 23(3):466-470. 10.1089/aid.2006.0184, 17411380.
-
(2007)
AIDS Research and Human Retroviruses
, vol.23
, Issue.3
, pp. 466-470
-
-
Hoek, L.1
Pollakis, G.2
Lukashov, V.V.3
Jebbink, M.F.4
Jeeninga, R.E.5
Bakker, M.6
Dukers, N.7
Jurriaans, S.8
Paxton, W.A.9
Back, N.K.T.10
-
29
-
-
35348944475
-
Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin
-
10.1086/521677, 17955435
-
Paraskevis D, Magiorkinis E, Magiorkinis G, Sypsa V, Paparizos V, Lazanas M, Gargalianos P, Antoniadou A, Panos G, Chrysos G, et al. Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin. J Infect Dis 2007, 196:1167-1176. 10.1086/521677, 17955435.
-
(2007)
J Infect Dis
, vol.196
, pp. 1167-1176
-
-
Paraskevis, D.1
Magiorkinis, E.2
Magiorkinis, G.3
Sypsa, V.4
Paparizos, V.5
Lazanas, M.6
Gargalianos, P.7
Antoniadou, A.8
Panos, G.9
Chrysos, G.10
-
30
-
-
0025944992
-
Importance of purine and pyrimidine content of local nucleotide sequences (six bases long) for evolution of the human immunodeficiency virus type 1
-
10.1073/pnas.88.20.9282, 52698, 1924392
-
Doi H. Importance of purine and pyrimidine content of local nucleotide sequences (six bases long) for evolution of the human immunodeficiency virus type 1. Proc Natl Acad Sci USA 1991, 88:9282-9286. 10.1073/pnas.88.20.9282, 52698, 1924392.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 9282-9286
-
-
Doi, H.1
|