-
1
-
-
33645763269
-
DNA sequences shaped by selection for stability
-
Ackermann M, Chao L. 2006. DNA sequences shaped by selection for stability. PLoS Genet. 2:e22.
-
(2006)
PLoS Genet.
, vol.2
-
-
Ackermann, M.1
Chao, L.2
-
2
-
-
77957597976
-
Mutation biases and mutation rate variation around very short human microsatellites revealed by human-chimpanzee orangutan genomic sequence alignments
-
Amos W. 2010. Mutation biases and mutation rate variation around very short human microsatellites revealed by human-chimpanzee orangutan genomic sequence alignments. J Mol Evol. 71:192-201.
-
(2010)
J Mol Evol.
, vol.71
, pp. 192-201
-
-
Amos, W.1
-
3
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. Gene Ontology Consortium
-
Ashburner M, et al. 2000. Gene ontology: tool for the unification of biology. Gene Ontology Consortium. Nat Genet. 25:25-29.
-
(2000)
Nat Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
4
-
-
0036072745
-
Tandem repeats in protein coding regions of primate genes
-
Borstnik B, Pumpernik D. 2002. Tandem repeats in protein coding regions of primate genes. Genome Res. 12:909-915.
-
(2002)
Genome Res.
, vol.12
, pp. 909-915
-
-
Borstnik, B.1
Pumpernik, D.2
-
5
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
Bulmer M. 1991. The selection-mutation-drift theory of synonymous codon usage. Genetics 129:897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
6
-
-
0031008401
-
Characteristic enrichment of DNA repeats in different genomes
-
Cox R, Mirkin SM. 1997. Characteristic enrichment of DNA repeats in different genomes. Proc Natl Acad Sci U S A. 94:5237-5242.
-
(1997)
Proc Natl Acad Sci U S A.
, vol.94
, pp. 5237-5242
-
-
Cox, R.1
Mirkin, S.M.2
-
7
-
-
0019859791
-
The number of repeats expected in random nucleic acid sequences and found in genes
-
de Wachter R. 1981. The number of repeats expected in random nucleic acid sequences and found in genes. J Theor Biol. 91:71-98.
-
(1981)
J Theor Biol.
, vol.91
, pp. 71-98
-
-
De Wachter, R.1
-
8
-
-
0032808947
-
The distribution of rates of spontaneous mutation over viruses, prokaryotes, and eukaryotes
-
Drake JW. 1999. The distribution of rates of spontaneous mutation over viruses, prokaryotes, and eukaryotes. Ann N Y Acad Sci. 870:100-107.
-
(1999)
Ann N y Acad Sci.
, vol.870
, pp. 100-107
-
-
Drake, J.W.1
-
9
-
-
0037233734
-
Replication error repair, microsatellites, and cancer
-
Duval A, Hamelin R. 2003. Replication error repair, microsatellites, and cancer. Med Sci (Paris). 19:55-62.
-
(2003)
Med Sci (Paris).
, vol.19
, pp. 55-62
-
-
Duval, A.1
Hamelin, R.2
-
10
-
-
0029027991
-
Synonymous substitution rates in enterobacteria
-
Eyre-Walker M, Bulmer M. 1995. Synonymous substitution rates in enterobacteria. Genetics 140:1407-1412.
-
(1995)
Genetics
, vol.140
, pp. 1407-1412
-
-
Eyre-Walker, M.1
Bulmer, M.2
-
11
-
-
0037102613
-
Transcription and nuclear transport of CAG/CTG trinucleotide repeats in yeast
-
Fabre E, Dujon B, Richard GF. 2002. Transcription and nuclear transport of CAG/CTG trinucleotide repeats in yeast. Nucleic Acids Res. 30: 3540-3547.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3540-3547
-
-
Fabre, E.1
Dujon, B.2
Richard, G.F.3
-
12
-
-
77952988983
-
Genome-wide evidence for selection acting on single amino-acid repeats
-
Haerty W, Golding BG. 2010. Genome-wide evidence for selection acting on single amino-acid repeats. Genome Res. 20:755-760.
-
(2010)
Genome Res.
, vol.20
, pp. 755-760
-
-
Haerty, W.1
Golding, B.G.2
-
14
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22: 160-174.
-
(1985)
J Mol Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
15
-
-
0026769505
-
Instability of simple sequence DNA in Saccharomyces cerevisiae
-
Henderson ST, Petes TD. 1992. Instability of simple sequence DNA in Saccharomyces cerevisiae. Mol Cell Biol. 12:2749-2757.
-
(1992)
Mol Cell Biol.
, vol.12
, pp. 2749-2757
-
-
Henderson, S.T.1
Petes, T.D.2
-
16
-
-
0019771734
-
Estimation of effective population size fromdata on linkage disequilibrium
-
Hill WG. 1981. Estimation of effective population size fromdata on linkage disequilibrium. Genetics Res. 38:209-216.
-
(1981)
Genetics Res.
, vol.38
, pp. 209-216
-
-
Hill, W.G.1
-
18
-
-
0025853590
-
Pseudo-templated transcription in prokaryotic and eukaryotic organisms
-
Jacques JP, Kolakofsky D. 1991. Pseudo-templated transcription in prokaryotic and eukaryotic organisms. Genes Dev. 5:707-713.
-
(1991)
Genes Dev.
, vol.5
, pp. 707-713
-
-
Jacques, J.P.1
Kolakofsky, D.2
-
19
-
-
0028952245
-
Simple repetitive DNA sequences from primates: Compilation and analysis
-
Jurka J, Pethiyagoda C. 1995. Simple repetitive DNA sequences from primates: compilation and analysis. J Mol Evol. 40:120-126.
-
(1995)
J Mol Evol.
, vol.40
, pp. 120-126
-
-
Jurka, J.1
Pethiyagoda, C.2
-
20
-
-
38049048656
-
The genome-wide determinants of human and chimpanzee microsatellite evolution
-
Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD. 2008. The genome-wide determinants of human and chimpanzee microsatellite evolution. Genome Res. 18:30-38.
-
(2008)
Genome Res.
, vol.18
, pp. 30-38
-
-
Kelkar, Y.D.1
Tyekucheva, S.2
Chiaromonte, F.3
Makova, K.D.4
-
21
-
-
0032168989
-
Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations
-
Kruglyak S, Durrett RT, Schug MD, Aquadro CF. 1998. Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc Natl Acad Sci U S A. 95:10774-10778.
-
(1998)
Proc Natl Acad Sci U S A.
, vol.95
, pp. 10774-10778
-
-
Kruglyak, S.1
Durrett, R.T.2
Schug, M.D.3
Aquadro, C.F.4
-
22
-
-
0347356456
-
The relationship between microsatellite slippage mutation rate and the number of repeat units
-
Lai Y, Sun F. 2003. The relationship between microsatellite slippage mutation rate and the number of repeat units. Mol Biol Evol. 20: 2123-2131.
-
(2003)
Mol Biol Evol.
, vol.20
, pp. 2123-2131
-
-
Lai, Y.1
Sun, F.2
-
23
-
-
77958450864
-
DNA slippage occurs at microsatellite loci without minimal threshold length in humans: A comparative genomic approach
-
Leclercq S, Rivals E, Jarne P. 2010. DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach. Gen Biol Evol. 2:325-335.
-
(2010)
Gen Biol Evol.
, vol.2
, pp. 325-335
-
-
Leclercq, S.1
Rivals, E.2
Jarne, P.3
-
24
-
-
0023256559
-
Slipped-strand mispairing: A major mechanism for DNA sequence evolution
-
Levinson G, Gutman GA. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol. 4:203-221.
-
(1987)
Mol Biol Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
25
-
-
0036897944
-
Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review
-
Li Y-C, Korol AB, Fahima T, Beiles A, Nevo E. 2002. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol. 11:2453-2465.
-
(2002)
Mol Ecol.
, vol.11
, pp. 2453-2465
-
-
Li, Y.-C.1
Korol, A.B.2
Fahima, T.3
Beiles, A.4
Nevo, E.5
-
26
-
-
57149089871
-
CTCF cis-regulates trinucleotide repeat instability in an epigenetic manner: A novel basis for mutational hot spot determination
-
Libby RT, et al. 2008. CTCF cis-regulates trinucleotide repeat instability in an epigenetic manner: a novel basis for mutational hot spot determination. PLoS Genet. 4:e1000257.
-
(2008)
PLoS Genet.
, vol.4
-
-
Libby, R.T.1
-
27
-
-
32244438870
-
Transcription promotes contraction of CAG repeat tracts in human cells
-
Lin Y, Dion V, Wilson JH. 2006. Transcription promotes contraction of CAG repeat tracts in human cells. Nat Struct Mol Biol. 13:179-180.
-
(2006)
Nat Struct Mol Biol.
, vol.13
, pp. 179-180
-
-
Lin, Y.1
Dion, V.2
Wilson, J.H.3
-
28
-
-
57849143868
-
Hypermutability of genes in Homo sapiens due to the hosting of long mono-SSR
-
Loire E, Praz F, Higuet D, Netter P, Achaz G. 2009. Hypermutability of genes in Homo sapiens due to the hosting of long mono-SSR. Mol Biol Evol. 26:111-121.
-
(2009)
Mol Biol Evol.
, vol.26
, pp. 111-121
-
-
Loire, E.1
Praz, F.2
Higuet, D.3
Netter, P.4
Achaz, G.5
-
29
-
-
23044471766
-
An algorithm for progressive multiple alignment of sequences with insertions
-
Loytynoja A, Goldman N. 2005. An algorithm for progressive multiple alignment of sequences with insertions. Proc Natl Acad Sci U S A. 102:10557-10562.
-
(2005)
Proc Natl Acad Sci U S A.
, vol.102
, pp. 10557-10562
-
-
Loytynoja, A.1
Goldman, N.2
-
30
-
-
0033951367
-
Selection against frameshift mutations limits microsatellite expansion in coding DNA
-
Metzgar D, Bytof J, Wills C. 2000. Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res. 10:72-80.
-
(2000)
Genome Res.
, vol.10
, pp. 72-80
-
-
Metzgar, D.1
Bytof, J.2
Wills, C.3
-
31
-
-
67649115335
-
Databases of homologous gene families for comparative genomics
-
Penel S, et al. 2009. Databases of homologous gene families for comparative genomics. BMC Bioinformatics 10(Suppl 6): S3.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL. 6
-
-
Penel, S.1
-
32
-
-
36949030790
-
Replication slippage versus point mutation rates in short tandem repeats of the human genome
-
Pumpernik D, Oblak B, Borstnik B. 2008. Replication slippage versus point mutation rates in short tandem repeats of the human genome. Mol Genet Genomics. 279:53-61.
-
(2008)
Mol Genet Genomics.
, vol.279
, pp. 53-61
-
-
Pumpernik, D.1
Oblak, B.2
Borstnik, B.3
-
33
-
-
28644450316
-
-
Sunderland (MA): Sinauer Associates
-
Rice SH. 2004. Evolutionary theory. Sunderland (MA): Sinauer Associates.
-
(2004)
Evolutionary Theory
-
-
Rice, S.H.1
-
35
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
Rubin GM, et al. 2000. Comparative genomics of the eukaryotes. Science 287:2204-2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
-
36
-
-
18844463753
-
Identifying the right stop: Determining how the surveillance complex recognizes and degrades an aberrant mRNA
-
Ruiz-Echevarria MJ, Gonzalez CI, Peltz SW. 1998. Identifying the right stop: determining how the surveillance complex recognizes and degrades an aberrant mRNA. EMBO J. 17:575-589.
-
(1998)
EMBO J.
, vol.17
, pp. 575-589
-
-
Ruiz-Echevarria, M.J.1
Gonzalez, C.I.2
Peltz, S.W.3
-
37
-
-
5144224893
-
Microsatellite mutation models: Insights from a comparison of humans and chimpanzees
-
Sainudiin R, Durrett RT, Aquadro CF, Nielsen R. 2004. Microsatellite mutation models: insights from a comparison of humans and chimpanzees. Genetics 168:383-395.
-
(2004)
Genetics
, vol.168
, pp. 383-395
-
-
Sainudiin, R.1
Durrett, R.T.2
Aquadro, C.F.3
Nielsen, R.4
-
38
-
-
0033808899
-
Evolutionary dynamics of microsatellite DNA
-
Schlotterer C. 2000. Evolutionary dynamics of microsatellite DNA. Chromosoma 109:365-371.
-
(2000)
Chromosoma
, vol.109
, pp. 365-371
-
-
Schlotterer, C.1
-
39
-
-
0026542473
-
Slippage synthesis of simple sequence DNA
-
Schlotterer C, Tautz D. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20:211-215.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 211-215
-
-
Schlotterer, C.1
Tautz, D.2
-
40
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
Von Haeseler, A.4
-
41
-
-
0035100593
-
A maximum-likelihood approach to fitting equilibrium models of microsatellite evolution
-
Sibly RM, Whittaker JC, Talbot M. 2001. A maximum-likelihood approach to fitting equilibrium models of microsatellite evolution. Mol Biol Evol. 18:413-417.
-
(2001)
Mol Biol Evol.
, vol.18
, pp. 413-417
-
-
Sibly, R.M.1
Whittaker, J.C.2
Talbot, M.3
-
42
-
-
79953313618
-
Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome
-
Siddle KJ, Goodship JA, Keavney B, Santibanez-Koref MF. 2011. Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome. Bioinformatics 27(7):895-898.
-
(2011)
Bioinformatics
, vol.27
, Issue.7
, pp. 895-898
-
-
Siddle, K.J.1
Goodship, J.A.2
Keavney, B.3
Santibanez-Koref, M.F.4
-
43
-
-
33947368233
-
Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories
-
Shankar R, et al. 2007. Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories. Mol Genet Genomics. 277:441-455.
-
(2007)
Mol Genet Genomics.
, vol.277
, pp. 441-455
-
-
Shankar, R.1
-
44
-
-
0029415835
-
Divergence time and population size in the lineage leading to modern humans
-
Takahata N, Satta Y, Klein J. 1995. Divergence time and population size in the lineage leading to modern humans. Theor Popul Biol. 48: 198-221.
-
(1995)
Theor Popul Biol.
, vol.48
, pp. 198-221
-
-
Takahata, N.1
Satta, Y.2
Klein, J.3
-
45
-
-
0028648854
-
Simple sequences
-
Tautz D. 1994. Simple sequences. Curr Opin Genet Dev. 4:832-837.
-
(1994)
Curr Opin Genet Dev.
, vol.4
, pp. 832-837
-
-
Tautz, D.1
-
46
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: Survey and analysis
-
Toth G, Gaspari Z, Jurka J. 2000. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res. 10:967-981.
-
(2000)
Genome Res.
, vol.10
, pp. 967-981
-
-
Toth, G.1
Gaspari, Z.2
Jurka, J.3
-
47
-
-
0037099597
-
Genes involved in DNA repair are mutational targets in endometrial cancers with microsatellite instability
-
Vassileva V, Millar A, Briollais L, Chapman W, Bapat B. 2002. Genes involved in DNA repair are mutational targets in endometrial cancers with microsatellite instability. Cancer Res. 62:4095-4099.
-
(2002)
Cancer Res.
, vol.62
, pp. 4095-4099
-
-
Vassileva, V.1
Millar, A.2
Briollais, L.3
Chapman, W.4
Bapat, B.5
-
48
-
-
0037043124
-
Frameshift mutations in the MBD4/MED1 gene in primary gastric cancer with high-frequency microsatellite instability
-
Yamada T, et al. 2002. Frameshift mutations in the MBD4/MED1 gene in primary gastric cancer with high-frequency microsatellite instability. Cancer Lett. 181:115-120.
-
(2002)
Cancer Lett.
, vol.181
, pp. 115-120
-
-
Yamada, T.1
-
49
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
50
-
-
70649090279
-
Estimating selection intensity on synonymous codon usage in a non-equilibrium population
-
Zeng K, Charleswoth B. 2010. Estimating selection intensity on synonymous codon usage in a non-equilibrium population. Genetics 183: 651-662.
-
(2010)
Genetics
, vol.183
, pp. 651-662
-
-
Zeng, K.1
Charleswoth, B.2
|