Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2

Nucleic Acids Research

Volumn 41, Issue 4, 2013, Pages 2255-2266

  Aras, Siddhesh ^a   Pak, Oleg ^b   Sommer, Natascha ^b   Finley, Russell ^a   Hü Ttemann, Maik ^a   Weissmann, Norbert ^b   Grossman, Lawrence I ^a  

^a WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b JUSTUS LIEBIG UNIVERSITY GIESSEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CXXC FINGER PROTEIN 5; CYTOCHROME C OXIDASE; CYTOCHROME C OXIDASE 4 ISOFORM 2; IMMUNOGLOBULIN J RECOMBINATION SIGNAL SEQUENCE BINDING PROTEIN; PROTEIN COILED COIL HELIX COILED COIL HELIX DOMAIN 2; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTERY MUSCLE; ARTICLE; CELL ENERGY; CONTROLLED STUDY; COX4I2 GENE; ENZYME ACTIVATION; ENZYME ACTIVITY; GENE; GENE EXPRESSION REGULATION; GENETIC REGULATION; HUMAN; HUMAN CELL; NONHUMAN; OXYGEN TENSION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; RAT; RNA INTERFERENCE; SMOOTH MUSCLE FIBER;

EID: 84876366987     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1454     Document Type: Article

References (40)

1. Napiwotzki, J. and Kadenbach, B. (1998) Extramitochondrial ATP/ ADP-ratios regulate cytochrome c oxidase activity via binding to the cytosolic domain of subunit IV. Biol. Chem., 379, 335-339.
2. Hü ttemann, M., Kadenbach, B. and Grossman, L.I. (2001) Mammalian subunit IV isoforms of cytochrome c oxidase. Gene, 267, 111-123.
3. Hü ttemann, M., Lee, I., Gao, X., Pecina, P., Pecinova, A., Liu, J., Aras, S., Sommer, N., Sanderson, T.H., Tost, M. et al. (2012) Cytochrome c oxidase subunit 4 isoform 2-knockout mice show reduced enzyme activity, airway hyporeactivity, and lung pathology. FASEB J., 26, 3916-3930.
4. Cooperstein, S.J. and Lazarow, A. (1951) A microspectrophotometric method for the determination of cytochrome oxidase. J. Biol. Chem., 189, 665-670.
5. Huttemann, M., Lee, I., Liu, J. and Grossman, L.I. (2007) Transcription of mammalian cytochrome c oxidase subunit IV-2 is controlled by a novel conserved oxygen responsive element. FEBS J., 274, 5737-5748.
6. Hamaguchi, Y., Matsunami, N., Yamamoto, Y. and Honjo, T. (1989) Purification and characterization of a protein that binds to the recombination signal sequence of the immunoglobulin J kappa segment. Nucleic Acids Res., 17, 9015-9026.
7. Baughman, J.M., Nilsson, R., Gohil, V.M., Arlow, D.H., Gauhar, Z. and Mootha, V.K. (2009) A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis. PLoS Genet., 5, e1000590.
8. Epstein, A.C., Gleadle, J.M., McNeill, L.A., Hewitson, K.S., O'Rourke, J., Mole, D.R., Mukherji, M., Metzen, E., Wilson, M.I., Dhanda, A. et al. (2001) C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation. Cell, 107, 43-54.
9. Kato, H., Taniguchi, Y., Kurooka, H., Minoguchi, S., Sakai, T., Nomura-Okazaki, S., Tamura, K. and Honjo, T. (1997) Involvement of RBP-J in biological functions of mouse Notch1 and its derivatives. Development, 124, 4133-4141.
10. Carroll, K.D., Bu, W., Palmeri, D., Spadavecchia, S., Lynch, S.J., Marras, S.A., Tyagi, S. and Lukac, D.M. (2006) Kaposi's Sarcoma-Associated herpesvirus lytic switch protein stimulates DNA binding of RBP-Jk/CSL to activate the Notch pathway. J. Virol., 80, 9697-9709.
11. Aras, S., Singh, G., Johnston, K., Foster, T. and Aiyar, A. (2009) Zinc coordination is required for and regulates transcription activation by Epstein-Barr nuclear antigen 1. PLoS Pathog., 5, e1000469.
12. Kang, S.H., Vieira, K. and Bungert, J. (2002) Combining chromatin immunoprecipitation and DNA footprinting: a novel method to analyze protein-DNA interactions in vivo. Nucleic Acids Res., 30, e44.
13. Meijer, A.H., Ouwerkerk, P.B. and Hoge, J.H. (1998) Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast. Yeast, 14, 1407-1415.
14. Gyuris, J., Golemis, E., Chertkov, H. and Brent, R. (1993) Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2. Cell, 75, 791-803.
15. Weissmann, N., Dietrich, A., Fuchs, B., Kalwa, H., Ay, M., Dumitrascu, R., Olschewski, A., Storch, U., Mederos y Schnitzler, M., Ghofrani, H.A. et al. (2006) Classical transient receptor potential channel 6 (TRPC6) is essential for hypoxic pulmonary vasoconstriction and alveolar gas exchange. Proc. Natl. Acad. Sci. USA, 103, 19093-19098.
16. Kinnula, V.L. and Crapo, J.D. (2003) Superoxide dismutases in the lung and human lung diseases. Am. J. Respir. Crit. Care Med., 167, 1600-1619.
17. Stenmark, K.R. and Gebb, S.A. (2003) Lung vascular development: breathing new life into an old problem. Am. J. Respir. Cell Mol. Biol., 28, 133-137.
18. Gebb, S.A. and Jones, P.L. (2003) Hypoxia and lung branching morphogenesis. Adv. Exp. Med. Biol., 543, 117-125.
19. West, J.B., Hackett, P.H., Maret, K.H., Milledge, J.S., Peters, R.M. Jr, Pizzo, C.J. and Winslow, R.M. (1983) Pulmonary gas exchange on the summit of Mount Everest. J. Appl. Physiol., 55, 678-687.
20. Tuder, R.M., Yun, J.H., Bhunia, A. and Fijalkowska, I. (2007) Hypoxia and chronic lung disease. J. Mol. Med. (Berl), 85, 1317-1324.
21. Hsieh, J.J. and Hayward, S.D. (1995) Masking of the CBF1/RBPJ kappa transcriptional repression domain by Epstein-Barr virus EBNA2. Science, 268, 560-563.
22. Oswald, F., Winkler, M., Cao, Y., Astrahantseff, K., Bourteele, S., Knochel, W. and Borggrefe, T. (2005) RBP-Jkappa/SHARP recruits CtIP/CtBP corepressors to silence Notch target genes. Mol. Cell. Biol., 25, 10379-10390.
23. Oswald, F., Tauber, B., Dobner, T., Bourteele, S., Kostezka, U., Adler, G., Liptay, S. and Schmid, R.M. (2001) p300 acts as a transcriptional coactivator for mammalian Notch-1. Mol. Cell. Biol., 21, 7761-7774.
24. Kurooka, H. and Honjo, T. (2000) Functional interaction between the mouse notch1 intracellular region and histone acetyltransferases PCAF and GCN5. J. Biol. Chem., 275, 17211-17220.
25. Gustafsson, M.V., Zheng, X., Pereira, T., Gradin, K., Jin, S., Lundkvist, J., Ruas, J.L., Poellinger, L., Lendahl, U. and Bondesson, M. (2005) Hypoxia requires notch signaling to maintain the undifferentiated cell state. Dev. Cell, 9, 617-628.
26. Andersson, T., Sodersten, E., Duckworth, J.K., Cascante, A., Fritz, N., Sacchetti, P., Cervenka, I., Bryja, V. and Hermanson, O. (2009) CXXC5 is a novel BMP4-regulated modulator of Wnt signaling in neural stem cells. J. Biol. Chem., 284, 3672-3681.
27. Kawai, T., Takahashi, K., Sato, S., Coban, C., Kumar, H., Kato, H., Ishii, K.J., Takeuchi, O. and Akira, S. (2005) IPS-1, an adaptor triggering RIG-I-and Mda5-mediated type I interferon induction. Nat. Immunol., 6, 981-988.
28. Pendino, F., Nguyen, E., Jonassen, I., Dysvik, B., Azouz, A., Lanotte, M., Segal-Bendirdjian, E. and Lillehaug, J.R. (2009) Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis. Blood, 113, 3172-3181.
29. Marchler-Bauer, A., Anderson, J.B., Derbyshire, M.K., DeWeese-Scott, C., Gonzales, N.R., Gwadz, M., Hao, L., He, S., Hurwitz, D.I., Jackson, J.D. et al. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res., 35, D237-D240.
30. Jin, C., Myers, A.M. and Tzagoloff, A. (1997) Cloning and characterization of MRP10, a yeast gene coding for a mitochondrial ribosomal protein. Curr. Genet., 31, 228-234.
31. Seifeddine, R., Dreiem, A., Tomkiewicz, C., Fulchignoni-Lataud, M.C., Brito, I., Danan, J.L., Favaudon, V., Barouki, R. and Massaad-Massade, L. (2007) Hypoxia and estrogen co-operate to regulate gene expression in T-47D human breast cancer cells. J. Steroid Biochem. Mol. Biol., 104, 169-179.
32. Ghazoui, Z., Buffa, F.M., Dunbier, A.K., Anderson, H., Dexter, T., Detre, S., Salter, J., Smith, I.E., Harris, A.L. and Dowsett, M. (2011) Close and stable relationship between proliferation and a hypoxia metagene in aromatase inhibitor-treated ER-positive breast cancer. Clin. Cancer Res., 17, 3005-3012.
33. Schofield, C.J. and Ratcliffe, P.J. (2004) Oxygen sensing by HIF hydroxylases. Nat. Rev. Mol. Cell Biol., 5, 343-354.
34. Nakayama, K., Frew, I.J., Hagensen, M., Skals, M., Habelhah, H., Bhoumik, A., Kadoya, T., Erdjument-Bromage, H., Tempst, P., Frappell, P.B. et al. (2004) Siah2 regulates stability of prolyl-hydroxylases, controls HIF-1alpha abundance, and modulates physiological responses to hypoxia. Cell, 117, 941-952.
35. Elvidge, G.P., Glenny, L., Appelhoff, R.J., Ratcliffe, P.J., Ragoussis, J. and Gleadle, J.M. (2006) Concordant regulation of gene expression by hypoxia and 2-oxoglutarate-dependent dioxygenase inhibition: the role of HIF-1alpha, HIF-2alpha, and other pathways. J. Biol. Chem., 281, 15215-15226.
36. Koditz, J., Nesper, J., Wottawa, M., Stiehl, D.P., Camenisch, G., Franke, C., Myllyharju, J., Wenger, R.H. and Katschinski, D.M. (2007) Oxygen-dependent ATF-4 stability is mediated by the PHD3 oxygen sensor. Blood, 110, 3610-3617.
37. Ameri, K., Hammond, E.M., Culmsee, C., Raida, M., Katschinski, D.M., Wenger, R.H., Wagner, E., Davis, R.J., Hai, T., Denko, N. et al. (2007) Induction of activating transcription factor 3 by anoxia is independent of p53 and the hypoxic HIF signalling pathway. Oncogene, 26, 284-289.
38. Cummins, E.P., Comerford, K.M., Scholz, C., Bruning, U. and Taylor, C.T. (2007) Hypoxic regulation of NF-kappaB signaling. Methods Enzymol., 435, 479-492.
39. Fukuda, R., Zhang, H., Kim, J.W., Shimoda, L., Dang, C.V. and Semenza, G.L. (2007) HIF-1 regulates cytochrome oxidase subunits to optimize efficiency of respiration in hypoxic cells. Cell, 129, 111-122.
40. Singh, S., Misiak, M., Beyer, C. and Arnold, S. (2010) Brain region specificity of 3-nitropropionic acid-induced vulnerability of neurons involves cytochrome c oxidase. Neurochem. Int., 57, 297-305.